Clone LD24646 Report

Search the DGRC for LD24646

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:46
Vector:pOT2
Associated Gene/Transcriptpch2-RA
Protein status:LD24646.pep: gold
Preliminary Size:1300
Sequenced Size:1452

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31453 2002-03-19 Blastp of sequenced clone
CG31453 2003-01-01 Sim4 clustering to Release 3
CG31453 2008-04-29 Release 5.5 accounting
CG31453 2008-08-15 Release 5.9 accounting
CG31453 2008-12-18 5.12 accounting

Clone Sequence Records

LD24646.complete Sequence

1452 bp (1452 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094800

> LD24646.complete
TTCCCGCGGCTTTTCAAAGCTTCTCCTGCATTAAAATGAGTTTTTTAAGC
AACAGCGACACAGTTCATGTGGAAGTTTGCCTGCGAGGTAACGATCTTCG
CTCTAATGCAATTCGCAACAATGTGGAGACAGCCCTAAAGGCCTATTTTC
AGACGGCTAGAAAATTGCCCAGAAATGTGTCATTCCTGCCGGATCTCACA
GCTGAGCAAACTGAACATGTGCACTCTGTTCTCCTGGAGCGCGACAATGG
CGGTGTGCAGCCTCTAAAGGTCGCCGAGACCAAATTTCGCTTCCATTTCT
ATGCCACTAGGCCAGAGGAAGGGCAACTTGGTCTGTTTTCGGGCGAAGAA
GGCTCGGATGGCATCGATAGCATCGTGGCGGCCAGTCATGCGCTCCTGCC
AGCCGCTCAGTTTGTGGGTCTGTGGGAGAACCTCATCTACGAGACAGGAC
TCAAGGAAAAGCTTCTAAAGTTTGCTCTTTCGGCACTGATGTTCTCTGAA
CACCGTGTGGACACGAATGTGATTGCCTGTAACCGACTGATACTGCTCCA
CGGACCACCTGGAACAGGAAAGACGAGCCTTTGCAAGGCCCTGGCCCAGA
AGTTGTCTATCCGTACCCAAGGCAGCTATGCTTACACGCACCTGGTGGAG
ATAAACAGCCACAGCCTGTTCTCGAAGTGGTTCTCTGAGAGCGGCAAGCT
AGTGGCGCAACTGTTTAATAAGATTGCAGAGCTAGTCTCCGATCCCAACA
ACCTGGTGTGCGTGCTGATCGACGAGGTTGAGTCGCTGGCATACGCCAGG
AGTGCCATGTCTAGTAATGAACCAAGGGATGCCATGCGTGTGGTAAATGC
GGTACTCACCCAGCTGGATTCCCTTAAGACTTGTCCCAACGTACTGATCC
TGGCCACATCTAACCTGGCTCAAAGCATTGATCTGGCCTTCGTGGATCGC
GCCGATATCCGACTCTTCATTGGTTATCCCGGCATTTCCGCTATCCGAGA
AATATACAAGGGCATGCTGGCTGAACTAATGTCGGCGGGAGTTCTGCAGC
GCGAAGTTCTGGAGTCGGAGGACGCCGAGGAAGGTTTGCTGACGCAATTG
GCTGAGCGCAGCGTTGGGCTAAGTGGCCGCACATTGCGGAAGCTGCCGCT
TTTGGCCCATGCCCAGTACACCAGCAGCACTCTGTTCGAGTTGGACCAGA
AGATCAGTCTATCGGACTTTCTGGACGCCATGCTGGAGGCCCTGGAGCAG
CATTTAGGCGAGCAACGCCTACTAAAATTGGAGTCCATGGAGCAGCTGTA
AAGGAAGACCGAAGCACAGACTGAAAAAATGAATTTACTAAACCCACTCT
ATGTTCATCAAATGCGATACTTTGTAAACTTCAATTTGCTGCTATGAAAA
ACAATCCGATGCAGAGGCACGGGTCCAATCCCCAAAAAAAAAAAAAAAAA
AA

LD24646.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
pch2.a 2108 pch2.a 58..1491 1..1434 7170 100 Plus
pch2-RA 1641 pch2-RA 58..1491 1..1434 7170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4386168..4387141 1433..460 4870 100 Minus
chr3R 27901430 chr3R 4387203..4387566 461..98 1805 99.7 Minus
chr3R 27901430 chr3R 4387621..4387717 97..1 485 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8560157..8561131 1434..460 4875 100 Minus
3R 32079331 3R 8561193..8561556 461..98 1820 100 Minus
3R 32079331 3R 8561611..8561707 97..1 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8300988..8301962 1434..460 4875 100 Minus
3R 31820162 3R 8302024..8302387 461..98 1820 100 Minus
3R 31820162 3R 8302442..8302538 97..1 485 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:45:39 has no hits.

LD24646.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:46:49 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4386168..4387139 462..1433 100 <- Minus
chr3R 4387203..4387566 98..461 99 <- Minus
chr3R 4387621..4387717 1..97 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:03 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 1..1266 36..1301 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:38 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 1..1266 36..1301 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:50 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 1..1266 36..1301 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:00 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 1..1266 36..1301 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:42:58 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 1..1266 36..1301 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:04 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 23..1455 1..1433 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:38 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 23..1455 1..1433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:50 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 58..1490 1..1433 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:01 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 23..1455 1..1433 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:58 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 58..1490 1..1433 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:49 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8560158..8561129 462..1433 100 <- Minus
3R 8561193..8561556 98..461 100 <- Minus
3R 8561611..8561707 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:49 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8560158..8561129 462..1433 100 <- Minus
3R 8561193..8561556 98..461 100 <- Minus
3R 8561611..8561707 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:49 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8560158..8561129 462..1433 100 <- Minus
3R 8561193..8561556 98..461 100 <- Minus
3R 8561611..8561707 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:50 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4385880..4386851 462..1433 100 <- Minus
arm_3R 4386915..4387278 98..461 100 <- Minus
arm_3R 4387333..4387429 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:26 Download gff for LD24646.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8300989..8301960 462..1433 100 <- Minus
3R 8302024..8302387 98..461 100 <- Minus
3R 8302442..8302538 1..97 100   Minus

LD24646.hyp Sequence

Translation from 2 to 1300

> LD24646.hyp
PAAFQSFSCIKMSFLSNSDTVHVEVCLRGNDLRSNAIRNNVETALKAYFQ
TARKLPRNVSFLPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRFHFY
ATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGL
KEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQK
LSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNN
LVCVLIDEVESLAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLIL
ATSNLAQSIDLAFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQR
EVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQK
ISLSDFLDAMLEALEQHLGEQRLLKLESMEQL*

LD24646.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-PB 421 CG31453-PB 1..421 12..432 2101 100 Plus
pch2-PA 421 CG31453-PA 1..421 12..432 2101 100 Plus
TER94-PD 759 CG2331-PD 466..645 177..381 182 28.4 Plus
TER94-PA 801 CG2331-PA 508..687 177..381 182 28.4 Plus
TER94-PE 825 CG2331-PE 533..712 177..381 182 28.4 Plus
TER94-PD 759 CG2331-PD 194..394 178..413 160 25.6 Plus
TER94-PA 801 CG2331-PA 236..436 178..413 160 25.6 Plus

LD24646.pep Sequence

Translation from 35 to 1300

> LD24646.pep
MSFLSNSDTVHVEVCLRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSF
LPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQLGL
FSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSA
LMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAY
THLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVES
LAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDL
AFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG
LLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAML
EALEQHLGEQRLLKLESMEQL*

LD24646.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17719-PA 425 GF17719-PA 1..415 1..411 1599 73.3 Plus
Dana\GF19853-PA 313 GF19853-PA 77..212 167..315 192 36 Plus
Dana\GF11135-PA 801 GF11135-PA 486..687 129..370 190 27.8 Plus
Dana\GF14117-PA 375 GF14117-PA 80..308 113..370 185 27.4 Plus
Dana\GF15657-PA 796 GF15657-PA 566..742 163..350 185 29.3 Plus
Dana\GF11135-PA 801 GF11135-PA 236..379 167..325 157 28.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17442-PA 421 GG17442-PA 1..421 1..421 1999 89.8 Plus
Dere\GG24448-PA 527 GG24448-PA 246..458 118..364 213 32.3 Plus
Dere\TER94-PA 801 GG24127-PA 486..687 129..370 186 27.3 Plus
Dere\GG23952-PA 369 GG23952-PA 80..325 113..394 185 25.6 Plus
Dere\GG18587-PA 479 GG18587-PA 241..376 167..315 185 35.3 Plus
Dere\TER94-PA 801 GG24127-PA 236..379 167..325 157 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14691-PA 426 GH14691-PA 1..419 1..414 1420 69.2 Plus
Dgri\GH20288-PA 802 GH20288-PA 487..688 129..370 190 27.8 Plus
Dgri\GH24269-PA 522 GH24269-PA 277..445 161..342 185 32.2 Plus
Dgri\GH13014-PA 373 GH13014-PA 56..308 95..370 181 26.5 Plus
Dgri\GH10120-PA 801 GH10120-PA 539..747 129..364 180 27.3 Plus
Dgri\GH20288-PA 802 GH20288-PA 237..380 167..325 157 28.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-PB 421 CG31453-PB 1..421 1..421 2101 100 Plus
pch2-PA 421 CG31453-PA 1..421 1..421 2101 100 Plus
nmd-PC 369 CG5395-PC 72..355 103..407 192 23.4 Plus
nmd-PA 369 CG5395-PA 72..355 103..407 192 23.4 Plus
nmd-PB 289 CG5395-PB 3..275 116..407 186 23.1 Plus
CG5776-PB 799 CG5776-PB 570..748 167..368 185 30.1 Plus
CG5776-PA 799 CG5776-PA 570..748 167..368 185 30.1 Plus
CG10793-PA 479 CG10793-PA 240..423 167..362 184 30.8 Plus
TER94-PD 759 CG2331-PD 466..645 166..370 182 28.4 Plus
TER94-PA 801 CG2331-PA 508..687 166..370 182 28.4 Plus
TER94-PE 825 CG2331-PE 533..712 166..370 182 28.4 Plus
TER94-PC 826 CG2331-PC 533..712 166..370 182 28.4 Plus
Vps4-PB 442 CG6842-PB 168..336 169..364 171 30.5 Plus
Vps4-PA 442 CG6842-PA 168..336 169..364 171 30.5 Plus
kat-60L1-PF 605 CG1193-PF 360..581 167..400 170 28.3 Plus
kat-60L1-PA 605 CG1193-PA 360..581 167..400 170 28.3 Plus
kat-60L1-PH 609 CG1193-PH 364..585 167..400 170 28.3 Plus
kat-60L1-PD 609 CG1193-PD 364..585 167..400 170 28.3 Plus
kat-60L1-PC 669 CG1193-PC 424..645 167..400 170 28.3 Plus
kat-60L1-PB 669 CG1193-PB 424..645 167..400 170 28.3 Plus
kat-60L1-PG 673 CG1193-PG 428..649 167..400 170 28.3 Plus
kat-60L1-PE 673 CG1193-PE 428..649 167..400 170 28.3 Plus
smid-PI 910 CG8571-PI 627..860 130..394 165 26.5 Plus
smid-PG 910 CG8571-PG 627..860 130..394 165 26.5 Plus
smid-PH 927 CG8571-PH 644..877 130..394 165 26.5 Plus
smid-PC 943 CG8571-PC 660..893 130..394 165 26.5 Plus
smid-PA 944 CG8571-PA 661..894 130..394 165 26.5 Plus
TER94-PD 759 CG2331-PD 194..394 167..402 160 25.6 Plus
TER94-PA 801 CG2331-PA 236..436 167..402 160 25.6 Plus
TER94-PE 825 CG2331-PE 261..461 167..402 160 25.6 Plus
TER94-PC 826 CG2331-PC 261..461 167..402 160 25.6 Plus
Rpt4-PB 397 CG3455-PB 179..339 170..342 159 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23677-PA 426 GI23677-PA 1..423 1..420 1409 66.7 Plus
Dmoj\GI19403-PA 376 GI19403-PA 80..308 113..370 194 25.8 Plus
Dmoj\GI19458-PA 801 GI19458-PA 486..687 129..370 190 27.8 Plus
Dmoj\GI10939-PA 500 GI10939-PA 257..398 161..315 185 34.6 Plus
Dmoj\GI14498-PA 802 GI14498-PA 572..748 163..364 184 29.9 Plus
Dmoj\GI19458-PA 801 GI19458-PA 236..379 167..325 156 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21543-PA 418 GL21543-PA 5..413 11..419 1418 68.9 Plus
Dper\GL19525-PA 551 GL19525-PA 277..482 130..364 204 31.8 Plus
Dper\GL19142-PA 292 GL19142-PA 3..278 116..407 198 26.1 Plus
Dper\GL26363-PA 909 GL26363-PA 602..807 113..325 170 26.9 Plus
Dper\GL25749-PA 387 GL25749-PA 143..274 169..315 168 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16260-PA 418 GA16260-PA 5..413 11..419 1400 68.1 Plus
Dpse\GA17379-PA 563 GA17379-PA 289..494 130..364 203 31.8 Plus
Dpse\GA15351-PA 801 GA15351-PA 486..687 129..370 190 27.8 Plus
Dpse\GA10562-PA 532 GA10562-PA 242..377 167..315 189 35.3 Plus
Dpse\GA19899-PA 441 GA19899-PA 167..335 169..364 176 30.5 Plus
Dpse\GA15351-PA 801 GA15351-PA 236..379 167..325 157 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26336-PA 421 GM26336-PA 1..421 1..421 2107 94.1 Plus
Dsec\GM18154-PA 523 GM18154-PA 242..454 118..364 202 31.9 Plus
Dsec\GM11802-PA 369 GM11802-PA 70..355 101..407 191 24.8 Plus
Dsec\GM21173-PA 801 GM21173-PA 486..687 129..370 189 27.8 Plus
Dsec\GM18837-PA 478 GM18837-PA 239..374 167..315 186 35.3 Plus
Dsec\GM21173-PA 801 GM21173-PA 236..379 167..325 157 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20861-PA 421 GD20861-PA 1..421 1..421 2107 94.1 Plus
Dsim\GD22765-PA 523 GD22765-PA 242..454 118..364 201 31.9 Plus
Dsim\GD10706-PA 801 GD10706-PA 486..687 129..370 189 27.8 Plus
Dsim\GD22279-PA 341 GD22279-PA 52..327 113..407 179 24.1 Plus
Dsim\GD17375-PA 442 GD17375-PA 168..336 169..364 176 30.5 Plus
Dsim\GD10706-PA 801 GD10706-PA 236..379 167..325 157 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23237-PA 427 GJ23237-PA 1..421 1..417 1412 70.1 Plus
Dvir\GJ18117-PA 376 GJ18117-PA 80..308 113..370 195 25.8 Plus
Dvir\GJ21209-PA 801 GJ21209-PA 486..687 129..370 190 27.8 Plus
Dvir\GJ15265-PA 487 GJ15265-PA 250..385 167..315 183 34.7 Plus
Dvir\GJ16581-PA 442 GJ16581-PA 168..336 169..364 176 30.5 Plus
Dvir\GJ21209-PA 801 GJ21209-PA 236..379 167..325 157 28.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11512-PA 426 GK11512-PA 1..426 1..418 1461 68.5 Plus
Dwil\GK18304-PA 376 GK18304-PA 80..308 113..370 203 28.9 Plus
Dwil\GK18355-PA 423 GK18355-PA 155..333 144..331 200 33.7 Plus
Dwil\GK21952-PA 801 GK21952-PA 486..687 129..370 190 27.8 Plus
Dwil\GK14869-PA 375 GK14869-PA 56..308 95..370 189 27.1 Plus
Dwil\GK21952-PA 801 GK21952-PA 236..379 167..325 157 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24844-PA 421 GE24844-PA 1..421 1..421 1993 89.3 Plus
Dyak\GE14905-PA 526 GE14905-PA 233..457 107..364 209 31.6 Plus
Dyak\GE19324-PA 801 GE19324-PA 486..687 129..370 190 27.8 Plus
Dyak\GE26152-PA 369 GE26152-PA 80..325 113..394 189 25.6 Plus
Dyak\GE19049-PA 384 GE19049-PA 133..306 169..370 182 31.7 Plus
Dyak\GE19324-PA 801 GE19324-PA 236..379 167..325 157 28.6 Plus