Clone LD24653 Report

Search the DGRC for LD24653

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:53
Vector:pOT2
Associated Gene/TranscriptVhaAC39-1-RA
Protein status:LD24653.pep: gold
Preliminary Size:1907
Sequenced Size:1808

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2934 2001-01-01 Release 2 assignment
CG2934 2001-11-29 Blastp of sequenced clone
CG2934 2003-01-01 Sim4 clustering to Release 3
VhaAC39 2008-04-29 Release 5.5 accounting
VhaAC39 2008-08-15 Release 5.9 accounting
VhaAC39 2008-12-18 5.12 accounting

Clone Sequence Records

LD24653.complete Sequence

1808 bp (1808 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069530

> LD24653.complete
AAAATATAAGAAGAGGAAGAGTTGAAAATCATATGACTTGTCGATCGATA
GAGAAAAAAGGTTGAATTTTCACCGTCGCTCCGTATCGAACTGCACGCCC
TTCGCCACACAATTCGCGCAACTTTCGGTCGAGCGAGAGCAGTCCCATAG
AAAGGAATCCAGCGCAATTCGCCACCTCTTCAACTTCCAGTCAGCTCCTC
TGCGTGTGTGTGTGTGCGTGTGTCATCAAGATGAACAGCTCGGGCTTTAT
GTTTAACATCGATAATGGATATCTGGAGGGTCTGTGCCGCGGCTTCAAGT
GCGGCATCCTGAAGCAGGCTGACTATCTCAACCTGGTGCAGTGCGAGACC
TTGGAGGATCTCAAGCTGCATCTGCAGGGAACGGACTATGGCAGCTTCCT
GGCCAACGAGCCCTCGCCCTTGTCGGTGTCCGTCATTGACGACAAGTTGC
GCGAAAAGCTGGTCATCGAGTTCCAGCACATGAGGAACCATGCTGTGGAG
CCGCTGTCCAACTTTCTGGACTTCATTACCTACGGTTATATGATCGACAA
CATCATTCTGCTGATCACTGGCACGCTGCACCAGCGACCCATCTCGGAGC
TGATCCCCAAGTGCCACCCTCTGGGCAGCTTTGAGCAGATGGAAGCCATC
CATGTGGCGTCCACTCCCGCTGAGCTCTACAACGCCGTCCTCGTGGACAC
GCCACTGGCGCCCTTCTTCGTCGACTGCATCTCCGAGCAGGATCTGGATG
AGATGAACATCGAGATCATTCGTAACACCCTTTACAAGGCCTACCTGGAG
GCGTTCTACAACTTTTGCAAGAACATGGGTGGTGCCACCGCCGACGTCAT
GTGCGAGATCCTGGCTTTTGAGGCCGATCGTCGTGCAATTATCATTACCA
TCAACTCCTTCGGCACCGAGCTGTCCAAGGACGACCGTGCCAAGCTGTAT
CCCAACTGCGGCAAAATGTACCCCGATGGCCTAGCCGCTTTGGCGCGAGC
CGACGACTACGAGCAGGTGAAGACCGTGGCCGAGTATTATGCGGAGTACG
CCGCTTTGTTTGACGGATCCGGCAACAATCCCGGCGACAAGACGCTGGAG
GACAAGTTCTTCGAGCACGAGGTGAAGCTGGACGTGTACGCCTTTTTGCA
GCAGTTCCACTTCGGTGTCTTCTACGCATACCTCAAGCTGAAGGAGCAGG
AGTGCCGTAACATCGTCTGGATCGCCGAGTGCGTTGCCCAGAAGCACCGC
GCAAAGATCGACAACTACATACCCATTTTCTAAGCGCGCTAGATGATCGC
TAAGCATTTGGCATACAAATAATATTACACGTTTTTTTTTCCTGCCTTTC
GATATGCGTTTTTTTTTGTTGTCCCTCTACCCTTGTTATTGAATTGTTTA
ATGTATATTATATTATGATACCGAGTCTGTATGTTTGTATGTAGCGAGTA
TTATTGCCGGTCCAGGCAAATTTTTGTCAAGTGTTCAGACCCAAGCCTAG
ATTTCTCAGTTTCCGCGGCTCCTCCTCCAATTGTTATCAGCATTGGCCCA
ATAGATAACTATATAATATGTATTCGGGAGACCCATAGTGTCCCTTCAGG
GCTTCGTGTTTGTGTACATATGTATAATTATCGAACGGAACGAAAACAGT
TCAAATTGAATGTAGAGAAAAGAAACATCAGCACCATATGTTAACTACTA
TATAGAAAATGCATACTTATACAAGAACTACATATGTGAATGATAAATCA
ATTATTAAAACATGTTTTCAAACATTCCCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAA

LD24653.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39.a 2139 VhaAC39.a 65..1848 1..1784 8905 99.9 Plus
VhaAC39-RA 1961 VhaAC39-RA 65..1848 1..1784 8905 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3775384..3776300 867..1781 4490 99.6 Plus
chrX 22417052 chrX 3774784..3775293 357..866 2520 99.6 Plus
chrX 22417052 chrX 3774090..3774446 1..357 1785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:15:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3882053..3882970 867..1784 4590 100 Plus
X 23542271 X 3881453..3881962 357..866 2535 99.8 Plus
X 23542271 X 3880759..3881115 1..357 1785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3890151..3891068 867..1784 4590 100 Plus
X 23527363 X 3889551..3890060 357..866 2535 99.8 Plus
X 23527363 X 3888857..3889213 1..357 1785 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:15:02 has no hits.

LD24653.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:16:06 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3774785..3775293 358..866 99 -> Plus
chrX 3774090..3774446 1..357 100 -> Plus
chrX 3775384..3776300 867..1781 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:05 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 1..1053 231..1283 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:09 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 1..1053 231..1283 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:17 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 1..1053 231..1283 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:28 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 1..1053 231..1283 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:01:59 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 1..1053 231..1283 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:20 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 20..1800 1..1781 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:09 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 20..1800 1..1781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:17 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 12..1792 1..1781 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:28 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 20..1800 1..1781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:01:59 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 12..1792 1..1781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:06 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
X 3880759..3881115 1..357 100 -> Plus
X 3881454..3881962 358..866 99 -> Plus
X 3882053..3882967 867..1781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:06 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
X 3880759..3881115 1..357 100 -> Plus
X 3881454..3881962 358..866 99 -> Plus
X 3882053..3882967 867..1781 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:06 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
X 3880759..3881115 1..357 100 -> Plus
X 3881454..3881962 358..866 99 -> Plus
X 3882053..3882967 867..1781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:17 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3774792..3775148 1..357 100 -> Plus
arm_X 3775487..3775995 358..866 99 -> Plus
arm_X 3776086..3777000 867..1781 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:53 Download gff for LD24653.complete
Subject Subject Range Query Range Percent Splice Strand
X 3888857..3889213 1..357 100 -> Plus
X 3889552..3890060 358..866 99 -> Plus
X 3890151..3891065 867..1781 100   Plus

LD24653.hyp Sequence

Translation from 230 to 1282

> LD24653.hyp
MNSSGFMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQG
TDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFIT
YGYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELY
NAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMG
GATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGKMYPDG
LAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKL
DVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPIF
*

LD24653.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-PA 350 CG2934-PA 1..350 1..350 1848 100 Plus
VhaAC39-2-PA 350 CG4624-PA 4..347 7..349 863 46.2 Plus

LD24653.pep Sequence

Translation from 230 to 1282

> LD24653.pep
MNSSGFMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQG
TDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFIT
YGYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELY
NAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMG
GATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGKMYPDG
LAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKL
DVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPIF
*

LD24653.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21182-PA 350 GF21182-PA 1..350 1..350 1869 99.7 Plus
Dana\GF18027-PA 350 GF18027-PA 5..346 8..349 886 45.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18679-PA 350 GG18679-PA 1..350 1..350 1869 99.7 Plus
Dere\GG12455-PA 350 GG12455-PA 2..347 5..349 890 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17612-PA 352 GH17612-PA 1..350 1..350 1842 97.7 Plus
Dgri\GH21449-PA 351 GH21449-PA 2..348 3..349 948 49.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-PA 350 CG2934-PA 1..350 1..350 1848 100 Plus
VhaAC39-2-PA 350 CG4624-PA 4..347 7..349 863 46.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16480-PA 350 GI16480-PA 1..350 1..350 1859 98.6 Plus
Dmoj\GI10510-PA 351 GI10510-PA 2..348 3..349 912 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14761-PA 350 GL14761-PA 1..350 1..350 1864 99.4 Plus
Dper\GL23045-PA 348 GL23045-PA 2..345 5..349 910 48 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15530-PA 350 GA15530-PA 1..350 1..350 1864 99.4 Plus
Dpse\GA18311-PA 348 GA18311-PA 2..345 5..349 917 48.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12314-PA 350 GM12314-PA 1..350 1..350 1873 100 Plus
Dsec\GM23587-PA 350 GM23587-PA 2..347 5..349 890 46 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16660-PA 215 GD16660-PA 1..212 1..212 1134 100 Plus
Dsim\GD18401-PA 368 GD18401-PA 2..327 5..329 810 45.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16024-PA 350 GJ16024-PA 1..350 1..350 1859 98.6 Plus
Dvir\GJ23190-PA 352 GJ23190-PA 2..349 3..349 992 51.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10228-PA 350 GK10228-PA 1..350 1..350 1869 99.7 Plus
Dwil\GK16475-PA 350 GK16475-PA 1..350 1..350 1845 98 Plus
Dwil\GK22588-PA 353 GK22588-PA 4..349 5..349 1016 51.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16319-PA 350 GE16319-PA 1..350 1..350 1869 99.7 Plus
Dyak\GE23978-PA 350 GE23978-PA 2..347 5..349 900 46.8 Plus