Clone LD24661 Report

Search the DGRC for LD24661

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:246
Well:61
Vector:pOT2
Associated Gene/TranscriptSec6-RA
Protein status:LD24661.pep: gold
Preliminary Size:2200
Sequenced Size:2401

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5341 2001-01-01 Release 2 assignment
CG5341 2001-09-19 Blastp of sequenced clone
CG5341 2003-01-01 Sim4 clustering to Release 3
sec6 2008-04-29 Release 5.5 accounting
sec6 2008-08-15 Release 5.9 accounting
sec6 2008-12-18 5.12 accounting

Clone Sequence Records

LD24661.complete Sequence

2401 bp (2401 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058549

> LD24661.complete
AGCACTTCCACTGCTGACGAAGATTGACCAAAACAGAGACTGAAAGTGAT
CCAAATAAATTGAAGATGGATTTACAGCAGCTGGAGGAGCAGGCTCGCCA
GGCAGCGCTCAAGGACATACAGAACATGTTGCAGCGACCAGGTCAACTGG
AGAAGGTGGAACAATATCGCCACCGAATCGCCCGGAAGAAGGCATCCGTT
GAGGCGCTCCTTAAGACCGGAATGCAAGGACAGCTGGACGGGGTCAGGGT
GGGACTTAAGCAGTTGGAGACCTGCATGCAGGACGTGCGCGAGGTAAGGC
GTCGAATGGACGAGGTGGAGCGCCTGCTGAGGGGCGTTCCCGAAGTCTAC
GACGCTTTGGAAGTTGTGCGGGAGGAAAACACAAAGCACTCCCAGTACGC
CACCGCCATGGAGAATCTGAAGCACATCTTCAACGTAGATGCCAGCGTAC
AAAAGACGATGGCGCTGATCGAGGATGATAAGCTGCTTAATGCCCATCAG
TGCCTGGCGGATCTGGAGAATTCGCGGGATGATCTTCTCTACGAACTGCA
CAAGCAGCCCAAGCAGCATGCGTCCGACAAGATCACCCTAAAGCGTCACT
TCGAGAAGGTTGACACGGTATCCCAAGAGCTGGAGAAAAAGCTGCGACTC
ATTCTTAGCCGCACGCTGAACACTCTGCGCAAGAAGCCCACCATCATCGT
TACCGCCCTACGCATCATAGAGCGGGAAGAGAAAAACGACCAGTTCGCGT
TGCAGCAGCAAAAGGTCACAGGATTCCTGCCGCCTGGAAGACCAAAGGCT
TGGCGCCGCATGATCATGGACGTGCTACAACAGTCGGTGATAACGCGCAT
AGAGGGATCCAAGCTAGAGGAGCGGGCCGATAACAAGATGTGGTTAGTAC
GAGACCTGGAGATATTGCGTCAAATCATTCTCGAGGATCTGCGCGTTGTG
AAGTCCCTTTGTGTGCCCTGCTTCCCGCCGCACTACGACATTTTCGGCGA
ATATGTCAAGTTCTATCACGAAGGACTTTCTAGCTATCTTGACAACATTG
TGCGCTCGGGCTTGGAGGGCAATGAATATGTATCAATGATGGCTTGGGTT
ACACACACCTATCCTGGCGTCGAGCTGATGTCCCATCCGGATCTTAATGT
GGATGTACACCGACAGATAGGTACTCTGCTGCGTCCGGAACATCTCAAAG
CGCTGGAAGATGAATATCTGCAAAATATGCAGAGAAACTTCCAGGAATGG
ATGACCAAGGCCGCAGAAACGGAGAAGCAGGAGTGGTTTACTGAGACGGT
GCCCGATCAGGATGAGGAGTACTACCACACTTCAGCGCCTGTCATCATAT
TCCAGATGATCGACCAGCATCTGCAGGTGACCAACACAATTCATCAGGAA
CTGACGTTCAAGGCGTTGGTAATGAGCATTCAGCAGGTGGAGATCTTTGG
CCAGACATATCTTAAGAACGTAATCGAGCTGAAGGAACACCATTTTCGCA
ATCGGGACCAGATCAAATACTTCACTCACTACATCATCACCATCGTGAAT
AACAGTCAGCAAATGGTTGAACTGGCGCAGCAGATGAAACAACTCTACTG
GCCCAAGTCACGTACTGAGCATTATGAGGATTTCGAACGTTTGCTTGCCA
CATTCCAGCGGATCCGGGCTCATGCCGCAAGTTACTTGCTGGAGGAAGCC
TTCCTGGACATGGAGTGTCACTTTAACGACCTATTCACTGCCAAGTGGCT
GGCCAGTAACATTGCCGTGGACACCATTTGTGTAACGCTGGACGATTACT
TCCAGGACTATAATCACCTGCGACCCAATAACTTCGAGATGGTCATCAAC
GAGGCCCAGAAGCTGCTGGCCAAGCGCTACATTAGGGCACTGCTATCCAA
GCGACTGTCTAAGCCACGGGCCGAGTGCGATGCCATTACGCGAAAAATCA
AGACCGAAGCCAAGCGGTTTAAGCTCTTCTTTGAGAAAATCGCGCCGAAG
ATTTCCCTCAGCGACTCTCCATTGGATCTTATATCCACGCTATCGGCACT
GCTTAGCTCGGATATCGAACTGCTCGTCTTGGACCTGCACACCTTGCTGG
GCAGCTATCCGTCTCTGAACGAGGACCACCTGGTACGGCTCTTTTACATT
CGCAACGATGTGAAGGCGGCCGAGGTGCGCGAGAAGGTGCAGGATGCCAT
GAAGTCGAAGAAGGCAATGGTCAGCATCGCCAAGCAGGATTGCATCTTCA
AGGAGATCGTGTTCAGCGACAAACTGTGGTAGACCTTGGAGTATAGTTCC
CAACCCATTCCGCATGTCCCTTTCTGTTCAGTATCGTATTTACTCTTAAG
CTGCGATTGTAATATTATTGTGCTTTAAAAAAAAAAAAAAAAAAAAAAAA
A

LD24661.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
sec6-RA 2502 sec6-RA 78..2454 1..2377 11885 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14513500..14514838 1038..2376 6560 99.3 Plus
chr2R 21145070 chr2R 14512398..14513434 1..1037 5125 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18626380..18627719 1038..2377 6700 100 Plus
2R 25286936 2R 18625278..18626314 1..1037 5185 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18627579..18628918 1038..2377 6700 100 Plus
2R 25260384 2R 18626477..18627513 1..1037 5185 100 Plus
Blast to na_te.dros performed 2019-03-16 04:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 512..578 673..742 127 69 Plus

LD24661.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:06:47 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14512398..14513434 1..1037 99 -> Plus
chr2R 14513500..14514838 1038..2376 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:09 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 1..2217 66..2282 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:21 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 1..2217 66..2282 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:08 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 1..2217 66..2282 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:29 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 1..2217 66..2282 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:17 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
Sec6-RA 1..2217 66..2282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:50 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 12..2387 1..2376 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:21 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 12..2387 1..2376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:08 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 30..2405 1..2376 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:29 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
sec6-RA 12..2387 1..2376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:17 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
Sec6-RA 30..2405 1..2376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:47 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18625278..18626314 1..1037 100 -> Plus
2R 18626380..18627718 1038..2376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:47 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18625278..18626314 1..1037 100 -> Plus
2R 18626380..18627718 1038..2376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:47 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18625278..18626314 1..1037 100 -> Plus
2R 18626380..18627718 1038..2376 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:08 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14512783..14513819 1..1037 100 -> Plus
arm_2R 14513885..14515223 1038..2376 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:38 Download gff for LD24661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18626477..18627513 1..1037 100 -> Plus
2R 18627579..18628917 1038..2376 100   Plus

LD24661.pep Sequence

Translation from 65 to 2281

> LD24661.pep
MDLQQLEEQARQAALKDIQNMLQRPGQLEKVEQYRHRIARKKASVEALLK
TGMQGQLDGVRVGLKQLETCMQDVREVRRRMDEVERLLRGVPEVYDALEV
VREENTKHSQYATAMENLKHIFNVDASVQKTMALIEDDKLLNAHQCLADL
ENSRDDLLYELHKQPKQHASDKITLKRHFEKVDTVSQELEKKLRLILSRT
LNTLRKKPTIIVTALRIIEREEKNDQFALQQQKVTGFLPPGRPKAWRRMI
MDVLQQSVITRIEGSKLEERADNKMWLVRDLEILRQIILEDLRVVKSLCV
PCFPPHYDIFGEYVKFYHEGLSSYLDNIVRSGLEGNEYVSMMAWVTHTYP
GVELMSHPDLNVDVHRQIGTLLRPEHLKALEDEYLQNMQRNFQEWMTKAA
ETEKQEWFTETVPDQDEEYYHTSAPVIIFQMIDQHLQVTNTIHQELTFKA
LVMSIQQVEIFGQTYLKNVIELKEHHFRNRDQIKYFTHYIITIVNNSQQM
VELAQQMKQLYWPKSRTEHYEDFERLLATFQRIRAHAASYLLEEAFLDME
CHFNDLFTAKWLASNIAVDTICVTLDDYFQDYNHLRPNNFEMVINEAQKL
LAKRYIRALLSKRLSKPRAECDAITRKIKTEAKRFKLFFEKIAPKISLSD
SPLDLISTLSALLSSDIELLVLDLHTLLGSYPSLNEDHLVRLFYIRNDVK
AAEVREKVQDAMKSKKAMVSIAKQDCIFKEIVFSDKLW*

LD24661.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11977-PA 738 GF11977-PA 1..738 1..738 3837 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21912-PA 738 GG21912-PA 1..738 1..738 3954 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19933-PA 738 GH19933-PA 1..738 1..738 3501 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sec6-PA 738 CG5341-PA 1..738 1..738 3789 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19891-PA 738 GI19891-PA 1..738 1..738 3518 89.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17031-PA 738 GL17031-PA 1..738 1..738 3717 94.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18815-PA 738 GA18815-PA 1..738 1..738 3709 94.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21903-PA 738 GM21903-PA 1..738 1..738 3949 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11399-PA 738 GD11399-PA 1..738 1..738 3957 99.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15060-PA 738 GJ15060-PA 1..738 1..738 3501 88.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21967-PA 738 GK21967-PA 1..738 1..738 3675 93.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11986-PA 738 GE11986-PA 1..738 1..738 3954 99.7 Plus

LD24661.hyp Sequence

Translation from 65 to 2281

> LD24661.hyp
MDLQQLEEQARQAALKDIQNMLQRPGQLEKVEQYRHRIARKKASVEALLK
TGMQGQLDGVRVGLKQLETCMQDVREVRRRMDEVERLLRGVPEVYDALEV
VREENTKHSQYATAMENLKHIFNVDASVQKTMALIEDDKLLNAHQCLADL
ENSRDDLLYELHKQPKQHASDKITLKRHFEKVDTVSQELEKKLRLILSRT
LNTLRKKPTIIVTALRIIEREEKNDQFALQQQKVTGFLPPGRPKAWRRMI
MDVLQQSVITRIEGSKLEERADNKMWLVRDLEILRQIILEDLRVVKSLCV
PCFPPHYDIFGEYVKFYHEGLSSYLDNIVRSGLEGNEYVSMMAWVTHTYP
GVELMSHPDLNVDVHRQIGTLLRPEHLKALEDEYLQNMQRNFQEWMTKAA
ETEKQEWFTETVPDQDEEYYHTSAPVIIFQMIDQHLQVTNTIHQELTFKA
LVMSIQQVEIFGQTYLKNVIELKEHHFRNRDQIKYFTHYIITIVNNSQQM
VELAQQMKQLYWPKSRTEHYEDFERLLATFQRIRAHAASYLLEEAFLDME
CHFNDLFTAKWLASNIAVDTICVTLDDYFQDYNHLRPNNFEMVINEAQKL
LAKRYIRALLSKRLSKPRAECDAITRKIKTEAKRFKLFFEKIAPKISLSD
SPLDLISTLSALLSSDIELLVLDLHTLLGSYPSLNEDHLVRLFYIRNDVK
AAEVREKVQDAMKSKKAMVSIAKQDCIFKEIVFSDKLW*

LD24661.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Sec6-PA 738 CG5341-PA 1..738 1..738 3789 100 Plus