BDGP Sequence Production Resources |
Search the DGRC for LD24702
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 247 |
Well: | 2 |
Vector: | pOT2 |
Associated Gene/Transcript | spd-2-RA |
Protein status: | LD24702.pep: gold |
Preliminary Size: | 3716 |
Sequenced Size: | 3663 |
Gene | Date | Evidence |
---|---|---|
CG17286 | 2000-02-14 | Blastp of sequenced clone |
CG17286 | 2001-01-01 | Release 2 assignment |
CG17286 | 2003-01-01 | Sim4 clustering to Release 3 |
spd-2 | 2008-04-29 | Release 5.5 accounting |
spd-2 | 2008-08-15 | Release 5.9 accounting |
spd-2 | 2008-12-18 | 5.12 accounting |
3663 bp (3663 high quality bases) assembled on 2000-02-14
GenBank Submission: AF145687
> LD24702.complete GAATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCAGTTTCATGGACCAG AACTCGCTGGGCATCCTGAACATGGACAATCTAAAGGTCTTCGGCGACTT GTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCACTGGTCGGGACTCTC CCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGCGTGCGCTGGAGACA CTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCAAAGAGCACTGCCCT CCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGTAACAGACGACACCA TCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCACGCCCGCCACCAAG GGCACAAACATCTCTTTTGAGCCTGCGGAGATCACCGGCAGGTCCACACT CTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCCATCCCTGTCGGTGG CCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTCGCCTGTTGGAAAGG AAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTATCACTTATCACGTGG CAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTCGCGCAGCTTACCGC GCACTGCGGACATGAGTGAACTGAGTCTTAACGGAGGTGGGGGATTTTCC TTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGATGAGAGCTTTGCTCC CGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGAAATCTCCTGGGCGC AGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCACACAGGCGTTGAAG AAGATTGCCGCACCAACATCCGAGATAGAAACCTCGGTGTCCAATTCTGT CTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTACTTCCAGACGCGTT CGGAAAATATATGGAACATTGTGAGCAATAGCAGCCCGAATCGTTCGCGA ACCAACCAACCGCTATTGGAACCAGAAAGTAACGTGACACTGGATTCGGT TGGCGAGAAGACCCCACAGCCAGACAATAAAACATACACTAAAACGGATG CCATAACTGGCTCGAATCTCGGACGCAATCTTATGCGTAAGATGCAACAG GATCGGATTGAAACTGCGCTAAAGAGCAGGAATGGTCTGGCAGCCAAAGA GACCAAGCGTCCGCCGTCGAGCTCCGAGATCCTAAGTCTCTCCGCGATCG ACAAGGCGCTAAGGGACATAGATCTCAATTCGGATACATCCACTGTAGAG GTTGTCAACCACCTGTGGGAGCATGGTCGTGGAAACAATTATGACGATGG GGAAAACAAGGAGAACCAGAGCAGCAACTCCCATGCGGAGCGCACTTCGT GCGGCTCCAACAAGCTTACCGACACCATGAGTTTCACGGACTCTGTGCTA AACTCAACGGATTTTCGTCATTTGCAGCAGAGCATCTCGCGCAAGCCGCT CAGTCCGCTGGCGGACCATCCGCAAATCACCATCAGCCGTGCGGACACCG ATCCCGTAGAGACAGAAGCCGAGGCGGACATCGATGAGTGGCCCTCGACG CCGGTAAAGGAGCCTAGCCGCAGAGTGAGACGTACTAAGATTTCTCCAAG AGCCGCAAGTCCGTCGAGTAGCGACGGCGTACGTCCACTGACCTGCACCG AGGATGAAAACGATGAGGAGGACGAGGACAAGACGCCAGTGAACAAGAAG AGGGTTTCGATCGCTACAATGGGCTTGATTCCGCGCAAAGCCTCCTCCTT AAGCAGCACTCGCTTGGATGGTTGTGACGTTGCCGTGGCCTCTTCTACCG AACGTGATTTTGGCATTTCACCGAACCTGGCCAAAAATCTATCGCCCCTG TCCTCGCCAAGAAGCTGTCTCTCGTCGCCGCTGCTGGACAGCACAACCAG TTCCGACCGCCGGCAGCTCATGAGTGGAGCAGCCCGCAAAGCAAACTCCT CGCCCGCAGGTAGTGAGGCCAGTTCCACCAGCGGATTCACAGCGAGTGGA AGACGTGGGTTGGGAACCAGCTCTGTTGCAGTGCCACGTAGTATTTCGCG CTGCTCGAACTCTAGTGAGTTCAGTCATCGCGATGGAAAACTGCTCCCCC TAAAGGTGACCCACACGACCCTCTGTTGGGGAAGCACAAAGCTGCGGACA GATGTGCGTAAGTCCATGCAGGTTAAGAACACAGCGGACAAACGGCTGGT CATTCGGCTTGGCATCCAGGGACCCGGATTCCAGCTGGTGGGCACCGACA GCAGCACGATCACACTCCAAGCCATGGAATGCCGCTCGGTAGTGATCAAC TTTTGCCCCACTGTCTGTGGAGCGGCCATCGGAGCCTTGTCTTTCTATGC ACCACCAGGAGCGCATAACAGCAACCAGCCGGGCCTAGAGATTCCGTTGT ACGGCTACGGGGGCAGTGCGTCCATCACCATAAACGGTCTGCTAAAGGGA CCGGTGGGCGCCAGTTTCCTTACCATCGGCGATGTATGCGAGCTGTCCGC TGGTCCGCTTTCGGCGAATCTCAAGTTTCACAACAAGGGCCCTCTCACCG CTTTCGTTGGTATATCAGTGGACTCCACCGTGCTCATGAAACTGCGCCTC AGCGAGGCCTTCGAGGTACGTCCGAGCCGCTTGATATTGCCGCCAAATAG CGAGCGCTGCGTGCAGATACTTTTCCGACCGAATCGTGAGGACTTGAAGA ACATACTTAAGAAGACCGCACAGGTGTTGACCCTGGCCAATATGCGGATT TTCTGCGGAGACGAGCCCAACAGACAGCGTATGCGTAGCTTGGTCCAAAG GATGAGCAGCCGACAGCGAGAGAAACTCACATCGCCGATGCTGGACAGCA TTTGGGGCGAATTTCCGGACGAGCAGCCAGTGCGCAACATCGGTCAGCTG AACGAACCGCCAGAGTTTATTCTGGACTTGGTCACAGTAGTGCGGATTAT TGATGTTGCGCTTACCCTCAATCGGGACTTTGATGAATCGTCTGAGAGTT CCCTGATGTTCCTGCCGGAGGCCGACGAAACCGTGCTATTCCGCACCATA TGTGTGGCCAATTCGCCGACGCCAACGCAGAGCCATCTATTGGAGCCAGT GGATGAGCTATTGGAGGCGGACACCACAACGTTGACGCCCGTCGAGCAAA ACTGGTGTGTGCAGCCAGGTTTGCTGGAATTCGGAGTGGGCTGTTCGCCA CTGGCCACTTTGTCCGTAACCAACAGCTTCTGCTCCAGGCAGCTCATCGA GGTCACATGCAATGTGCCCGATTTGGTGCGAATCAGTCCCAGTGAGTGCT ACGTATCCCCGGATGGCGGCCACGCGGAGATCGATGTGCGCCTGCTCCGC TCACCCAGGCAGGATTTGCTCGAAAGGGAGCCGCTCATTGTGGTCTCCAT GGAAAACGAGCGCATCAGTGTCCCGATTAGTTTTAAATTTTAAAATTTGT TTTATTTGTGCCTGCTAATTCTGCTTTCCCTATGTTTGTGTAGTTAGTTT AAACAAAAATTGTATTGTGTACTTGTGAAATGAAACCGTGTTTGCAGAGT ATTTGTAAGGAAAACGCATAACCCTAAAGTTAAAATACTCGCTTGTTTCC TAAAAGTTGAATTTAGCTTAAATAAAAACTAATAAAGTATAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16580982..16583777 | 3640..845 | 13980 | 100 | Minus |
chr3L | 24539361 | chr3L | 16583839..16584596 | 844..87 | 3790 | 100 | Minus |
chr3L | 24539361 | chr3L | 16591505..16592262 | 844..87 | 3640 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 16590863..16591350 | 1456..969 | 2380 | 99.2 | Minus |
chr3L | 24539361 | chr3L | 16591346..16591443 | 942..845 | 475 | 99 | Minus |
chr3L | 24539361 | chr3L | 16584657..16584743 | 87..1 | 435 | 100 | Minus |
chr3L | 24539361 | chr3L | 16592321..16592408 | 88..1 | 335 | 92 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16591206..16594002 | 3641..845 | 13985 | 100 | Minus |
3L | 28110227 | 3L | 16594064..16594821 | 844..87 | 3790 | 100 | Minus |
3L | 28110227 | 3L | 16601731..16602488 | 844..87 | 3640 | 98.7 | Minus |
3L | 28110227 | 3L | 16601089..16601576 | 1456..969 | 2380 | 99.2 | Minus |
3L | 28110227 | 3L | 16601572..16601669 | 942..845 | 475 | 99 | Minus |
3L | 28110227 | 3L | 16594882..16594968 | 87..1 | 435 | 100 | Minus |
3L | 28110227 | 3L | 16602547..16602634 | 88..1 | 335 | 92 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16584306..16587102 | 3641..845 | 13985 | 100 | Minus |
3L | 28103327 | 3L | 16587164..16587921 | 844..87 | 3790 | 100 | Minus |
3L | 28103327 | 3L | 16594831..16595588 | 844..87 | 3640 | 98.6 | Minus |
3L | 28103327 | 3L | 16594189..16594676 | 1456..969 | 2380 | 99.1 | Minus |
3L | 28103327 | 3L | 16594672..16594769 | 942..845 | 475 | 98.9 | Minus |
3L | 28103327 | 3L | 16587982..16588068 | 87..1 | 435 | 100 | Minus |
3L | 28103327 | 3L | 16595647..16595734 | 88..1 | 335 | 92 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16580982..16583777 | 845..3640 | 100 | <- | Minus |
chr3L | 16583839..16584595 | 88..844 | 100 | <- | Minus |
chr3L | 16584657..16584743 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 1..3441 | 3..3443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 1..3441 | 3..3443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 1..3441 | 3..3443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 1..3441 | 3..3443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 1..3441 | 3..3443 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 75..3714 | 1..3640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 75..3714 | 1..3640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 47..3686 | 1..3640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 75..3714 | 1..3640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
spd-2-RA | 47..3686 | 1..3640 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16591207..16594002 | 845..3640 | 100 | <- | Minus |
3L | 16594064..16594820 | 88..844 | 100 | <- | Minus |
3L | 16594882..16594968 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16591207..16594002 | 845..3640 | 100 | <- | Minus |
3L | 16594064..16594820 | 88..844 | 100 | <- | Minus |
3L | 16594882..16594968 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16591207..16594002 | 845..3640 | 100 | <- | Minus |
3L | 16594064..16594820 | 88..844 | 100 | <- | Minus |
3L | 16594882..16594968 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16584307..16587102 | 845..3640 | 100 | <- | Minus |
arm_3L | 16587164..16587920 | 88..844 | 100 | <- | Minus |
arm_3L | 16587982..16588068 | 1..87 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16584307..16587102 | 845..3640 | 100 | <- | Minus |
3L | 16587164..16587920 | 88..844 | 100 | <- | Minus |
3L | 16587982..16588068 | 1..87 | 100 | Minus |
Translation from 2 to 3442
> LD24702.pep MDSSSGSQGNGSFMDQNSLGILNMDNLKVFGDLSSFSKSGRRSGTGRDSP AVHERLREERLRALETLEKPRPSRSSQAKSTALQMRLSTNISELVTDDTI DLNSSSSFALVTPATKGTNISFEPAEITGRSTLCQAGKQRRREKPSLSVA EILKSSFVEKARLLERKLQDASQAEASYHLSRGSSSSLSDSFNCSRSLPR TADMSELSLNGGGGFSFGSASLAAEGQDESFAPAELMQSKLVLGEISWAQ EFTAMPTATLSTQALKKIAAPTSEIETSVSNSVLAGDPDFSLGNYFQTRS ENIWNIVSNSSPNRSRTNQPLLEPESNVTLDSVGEKTPQPDNKTYTKTDA ITGSNLGRNLMRKMQQDRIETALKSRNGLAAKETKRPPSSSEILSLSAID KALRDIDLNSDTSTVEVVNHLWEHGRGNNYDDGENKENQSSNSHAERTSC GSNKLTDTMSFTDSVLNSTDFRHLQQSISRKPLSPLADHPQITISRADTD PVETEAEADIDEWPSTPVKEPSRRVRRTKISPRAASPSSSDGVRPLTCTE DENDEEDEDKTPVNKKRVSIATMGLIPRKASSLSSTRLDGCDVAVASSTE RDFGISPNLAKNLSPLSSPRSCLSSPLLDSTTSSDRRQLMSGAARKANSS PAGSEASSTSGFTASGRRGLGTSSVAVPRSISRCSNSSEFSHRDGKLLPL KVTHTTLCWGSTKLRTDVRKSMQVKNTADKRLVIRLGIQGPGFQLVGTDS STITLQAMECRSVVINFCPTVCGAAIGALSFYAPPGAHNSNQPGLEIPLY GYGGSASITINGLLKGPVGASFLTIGDVCELSAGPLSANLKFHNKGPLTA FVGISVDSTVLMKLRLSEAFEVRPSRLILPPNSERCVQILFRPNREDLKN ILKKTAQVLTLANMRIFCGDEPNRQRMRSLVQRMSSRQREKLTSPMLDSI WGEFPDEQPVRNIGQLNEPPEFILDLVTVVRIIDVALTLNRDFDESSESS LMFLPEADETVLFRTICVANSPTPTQSHLLEPVDELLEADTTTLTPVEQN WCVQPGLLEFGVGCSPLATLSVTNSFCSRQLIEVTCNVPDLVRISPSECY VSPDGGHAEIDVRLLRSPRQDLLEREPLIVVSMENERISVPISFKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10517-PA | 1155 | GF10517-PA | 1..1155 | 1..1146 | 4679 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15868-PA | 1146 | GG15868-PA | 1..1146 | 1..1146 | 5426 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16460-PA | 1148 | GH16460-PA | 1..1147 | 1..1145 | 3439 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spd-2-PA | 1146 | CG17286-PA | 1..1146 | 1..1146 | 5804 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16715-PA | 1133 | GI16715-PA | 1..1133 | 1..1146 | 3509 | 61.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17978-PA | 1126 | GL17978-PA | 1..1126 | 14..1146 | 4029 | 72.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14442-PA | 1145 | GA14442-PA | 1..1145 | 14..1146 | 4090 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24385-PA | 934 | GM24385-PA | 1..918 | 1..917 | 4363 | 95.6 | Plus |
Dsec\GM24386-PA | 201 | GM24386-PA | 1..201 | 946..1146 | 1020 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12457-PA | 1147 | GD12457-PA | 1..1147 | 1..1146 | 5829 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12459-PA | 1167 | GJ12459-PA | 1..1166 | 1..1145 | 3405 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21193-PA | 1082 | GK21193-PA | 7..1081 | 14..1145 | 3384 | 64.2 | Plus |
Dwil\GK22083-PA | 820 | GK22083-PA | 2..820 | 11..1055 | 1944 | 47.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22207-PA | 1146 | GE22207-PA | 1..1146 | 1..1146 | 5484 | 92.2 | Plus |
Translation from 2 to 3442
> LD24702.hyp MDSSSGSQGNGSFMDQNSLGILNMDNLKVFGDLSSFSKSGRRSGTGRDSP AVHERLREERLRALETLEKPRPSRSSQAKSTALQMRLSTNISELVTDDTI DLNSSSSFALVTPATKGTNISFEPAEITGRSTLCQAGKQRRREKPSLSVA EILKSSFVEKARLLERKLQDASQAEASYHLSRGSSSSLSDSFNCSRSLPR TADMSELSLNGGGGFSFGSASLAAEGQDESFAPAELMQSKLVLGEISWAQ EFTAMPTATLSTQALKKIAAPTSEIETSVSNSVLAGDPDFSLGNYFQTRS ENIWNIVSNSSPNRSRTNQPLLEPESNVTLDSVGEKTPQPDNKTYTKTDA ITGSNLGRNLMRKMQQDRIETALKSRNGLAAKETKRPPSSSEILSLSAID KALRDIDLNSDTSTVEVVNHLWEHGRGNNYDDGENKENQSSNSHAERTSC GSNKLTDTMSFTDSVLNSTDFRHLQQSISRKPLSPLADHPQITISRADTD PVETEAEADIDEWPSTPVKEPSRRVRRTKISPRAASPSSSDGVRPLTCTE DENDEEDEDKTPVNKKRVSIATMGLIPRKASSLSSTRLDGCDVAVASSTE RDFGISPNLAKNLSPLSSPRSCLSSPLLDSTTSSDRRQLMSGAARKANSS PAGSEASSTSGFTASGRRGLGTSSVAVPRSISRCSNSSEFSHRDGKLLPL KVTHTTLCWGSTKLRTDVRKSMQVKNTADKRLVIRLGIQGPGFQLVGTDS STITLQAMECRSVVINFCPTVCGAAIGALSFYAPPGAHNSNQPGLEIPLY GYGGSASITINGLLKGPVGASFLTIGDVCELSAGPLSANLKFHNKGPLTA FVGISVDSTVLMKLRLSEAFEVRPSRLILPPNSERCVQILFRPNREDLKN ILKKTAQVLTLANMRIFCGDEPNRQRMRSLVQRMSSRQREKLTSPMLDSI WGEFPDEQPVRNIGQLNEPPEFILDLVTVVRIIDVALTLNRDFDESSESS LMFLPEADETVLFRTICVANSPTPTQSHLLEPVDELLEADTTTLTPVEQN WCVQPGLLEFGVGCSPLATLSVTNSFCSRQLIEVTCNVPDLVRISPSECY VSPDGGHAEIDVRLLRSPRQDLLEREPLIVVSMENERISVPISFKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
spd-2-PA | 1146 | CG17286-PA | 1..1146 | 1..1146 | 5804 | 100 | Plus |