Clone LD24704 Report

Search the DGRC for LD24704

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:247
Well:4
Vector:pOT2
Associated Gene/TranscriptCG16903-RA
Protein status:LD24704.pep: gold
Preliminary Size:2200
Sequenced Size:1932

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16903 2001-09-19 Blastp of sequenced clone
CG16903 2003-01-01 Sim4 clustering to Release 3
CG16903 2008-04-29 Release 5.5 accounting
CG16903 2008-08-15 Release 5.9 accounting
CG16903 2008-12-18 5.12 accounting

Clone Sequence Records

LD24704.complete Sequence

1932 bp (1932 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058550

> LD24704.complete
TTATCGGCTAAATTTACAAAAAAAAAGGGAAAATTAAAAAATTAAAACAC
TTAAATAAACGCTTTCCTGGGTTAACCGCGCACGAATGGCCACCCGTGGG
GCCGGCTCGACTGTGGTCCACACGACGGTGACAGCGCTGACGGTGGAGAC
GATCACCAATGTCCTGACCACGGTGACTTCGTTCCATTCGAACAGCGTCA
ACATTTCGAACAACAACAGCAGCAGTGGAGCGGCCCCGGGGGCGGATGCA
GCTGGCGGCGATGCAGGGGGCGTGGCAGCGGCTCAGGCGGACGCCAACAA
GCCTATCTATCCTCGGCTCTTTAACCGCATCGTGCTGACGCTGGAGAACA
GCCTCATTCCGGAGGGCAAAATCGATGTGACGCCATCCAGCCAGGATGGA
CTGGACCATGAGACGGAGAAGGACCTGCGCATACTGGGCTGCGAGCTTAT
TCAGACAGCCGGAATTTTGCTGCGCTTGCCGCAGGTTGCCATGGCCACCG
GCCAGGTGCTGTTCCAGCGCTTCTTCTACTCGAAGAGCTTTGTGCGGCAC
AACATGGAGACTGTGGCCATGAGCTGCGTGTGCCTGGCGTCCAAGATCGA
GGAGGCGCCGCGCCGCATTAGAGACGTGATCAATGTGTTCCATCACATCA
AGCAAGTGCGGGCCCAAAAGGAAATCTCGCCCATGGTGCTAGATCCTTAC
TACACGAACCTCAAGATGCAGGTGATCAAGGCCGAGCGGCGCGTCCTCAA
GGAACTGGGCTTCTGTGTACACGTGAAGCATCCGCACAAGCTGATCGTGA
TGTATCTGCAGGTGCTTCAGTACGAGAAGCACGAGAAGCTGATGCAGCTC
TCCTGGAACTTCATGAATGACTCGCTGAGGACGGACGTTTTTATGCGCTA
CACACCAGAGGCGATTGCATGCGCCTGCATCTACCTGAGTGCCCGCAAGC
TCAACATACCTCTGCCCAACAGCCCGCCGTGGTTCGGCATTTTTCGGGTG
CCCATGGCGGACATTACGGATATCTGCTACCGTGTGATGGAGCTGTACAT
GCGTTCCAAGCCGGTGGTGGAGAAACTGGAGGCGGCCGTGGACGAGCTGA
AAAAGCGGTACATTGATGCGCGCAACAAAACGAAGGAGGCAAACACACCG
CCGGCTGTAATCACCGTGGATCGGAACAATGGCTCGCACAATGCGTGGGG
TGGCTTCATCCAGCGTGCTATCCCACTGCCCTTGCCATCGGAAAAGTCGC
CGCAAAAGGATTCGAGGTCACGCTCGCGATCCAGGACGCGCACCCATTCG
CGGACACCTCGCTCCCGATCACCCAGGTCCAGGTCGCCTAGTCGCGAGCG
CACTAAGAAGACCCACCGCAGTCGATCCTCCCGCTCGCGCTCCCGTTCGC
CGCCGAAGCATAAGAAAAAGTCACGTCACTACTCGAGGTCGCCCACGCGC
TCCAATTCGCCGCACAGCAAGCACAGGAAGTCGAAATCCTCGCGAGAACG
CTCTGAATACTACTCCAAGAAAGATCGGTCTGGAAACCCAGGCAGTAGCA
ATAATCTAGGTGATGGCGACAAGTATCGCAACTCCGTCTCCAATTCCGGC
AAGCACAGTCGGTACTCCTCCTCCTCGTCGCGTCGGAACAGCGGTGGTGG
TGGAGACGGAAGAAGCGGAGGAGGAGGTGGTGGCGGCGGTGGAGGCAACG
GGAACCACGGCAGCCGAGGGGGGCACAAGCATCGGGATGGCGATCGCTCC
AGGGATCGCAAGCGCTAGTGATTGATAGACAAGCGAGACAAACACTCCCT
TATATTTAATTGCTCTTTATTTTACAAATTTACAGATTATTTCTACCGAT
TTAGTAATGCTAATGTGTATTGAAAAAACGAACGCGGGTAAACAATAAAT
GTAACTCTTCAATCAAAAAAAAAAAAAAAAAA

LD24704.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16903-RA 2010 CG16903-RA 45..1963 1..1919 9595 100 Plus
CG4025-RA 1247 CG4025-RA 1130..1247 1919..1802 590 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1972745..1973558 1483..670 4055 99.9 Minus
chrX 22417052 chrX 1973628..1974297 670..1 3350 100 Minus
chrX 22417052 chrX 1972257..1972688 1914..1483 2115 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2078831..2079644 1483..670 4070 100 Minus
X 23542271 X 2079714..2080383 670..1 3350 100 Minus
X 23542271 X 2078338..2078774 1919..1483 2185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2086929..2087742 1483..670 4070 100 Minus
X 23527363 X 2087812..2088481 670..1 3350 100 Minus
X 23527363 X 2086436..2086872 1919..1483 2185 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:05:45 has no hits.

LD24704.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:06:49 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1972257..1972450 1721..1914 99 == Minus
chrX 1972533..1972688 1483..1638 100 <- Minus
chrX 1972746..1973558 670..1482 99 <- Minus
chrX 1973629..1974297 1..669 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:16 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1683 86..1768 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:12 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1683 86..1768 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:13 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1683 86..1768 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:46 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1683 86..1768 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:21 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1683 86..1768 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:47 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1914 1..1914 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:12 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1914 1..1914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:13 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 23..1936 1..1914 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:47 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 1..1914 1..1914 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:21 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
CG16903-RA 23..1936 1..1914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:49 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
X 2078343..2078774 1483..1914 100 <- Minus
X 2078832..2079644 670..1482 100 <- Minus
X 2079715..2080383 1..669 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:49 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
X 2078343..2078774 1483..1914 100 <- Minus
X 2078832..2079644 670..1482 100 <- Minus
X 2079715..2080383 1..669 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:49 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
X 2078343..2078774 1483..1914 100 <- Minus
X 2078832..2079644 670..1482 100 <- Minus
X 2079715..2080383 1..669 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:13 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1972376..1972807 1483..1914 100 <- Minus
arm_X 1972865..1973677 670..1482 100 <- Minus
arm_X 1973748..1974416 1..669 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:38 Download gff for LD24704.complete
Subject Subject Range Query Range Percent Splice Strand
X 2086441..2086872 1483..1914 100 <- Minus
X 2086930..2087742 670..1482 100 <- Minus
X 2087813..2088481 1..669 100   Minus

LD24704.pep Sequence

Translation from 85 to 1767

> LD24704.pep
MATRGAGSTVVHTTVTALTVETITNVLTTVTSFHSNSVNISNNNSSSGAA
PGADAAGGDAGGVAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTP
SSQDGLDHETEKDLRILGCELIQTAGILLRLPQVAMATGQVLFQRFFYSK
SFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQKEISPM
VLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYEKHE
KLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWF
GIFRVPMADITDICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTK
EANTPPAVITVDRNNGSHNAWGGFIQRAIPLPLPSEKSPQKDSRSRSRSR
TRTHSRTPRSRSPRSRSPSRERTKKTHRSRSSRSRSRSPPKHKKKSRHYS
RSPTRSNSPHSKHRKSKSSRERSEYYSKKDRSGNPGSSNNLGDGDKYRNS
VSNSGKHSRYSSSSSRRNSGGGGDGRSGGGGGGGGGGNGNHGSRGGHKHR
DGDRSRDRKR*

LD24704.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22225-PA 558 GF22225-PA 1..558 1..560 2026 82.8 Plus
Dana\GF15386-PA 402 GF15386-PA 14..243 99..325 317 31.8 Plus
Dana\GF18125-PA 267 GF18125-PA 19..248 88..330 185 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12651-PA 563 GG12651-PA 1..563 1..560 2246 93.4 Plus
Dere\GG21466-PA 401 GG21466-PA 14..243 99..325 315 31 Plus
Dere\GG15801-PA 1097 GG15801-PA 55..233 99..287 240 30.5 Plus
Dere\GG21023-PA 267 GG21023-PA 31..248 105..330 185 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24522-PA 617 GH24522-PA 101..429 62..392 1670 90.6 Plus
Dgri\GH10982-PA 434 GH10982-PA 14..243 99..325 310 31.8 Plus
Dgri\GH15353-PA 1111 GH15353-PA 35..229 99..300 242 30.1 Plus
Dgri\GH19239-PA 267 GH19239-PA 21..248 90..330 182 28.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16903-PA 560 CG16903-PA 1..560 1..560 2918 100 Plus
CycK-PC 400 CG15218-PC 14..243 99..325 302 31.4 Plus
CycK-PB 400 CG15218-PB 14..243 99..325 302 31.4 Plus
CycK-PA 400 CG15218-PA 14..243 99..325 302 31.4 Plus
CycT-PC 1097 CG6292-PC 5..488 49..554 282 24.9 Plus
CycT-PB 1097 CG6292-PB 5..488 49..554 282 24.9 Plus
CG9915-PC 820 CG9915-PC 253..437 385..558 210 36.2 Plus
CG9915-PB 820 CG9915-PB 253..437 385..558 210 36.2 Plus
CycC-PA 267 CG7281-PA 32..250 106..332 209 27.7 Plus
CG9915-PC 820 CG9915-PC 176..349 385..556 194 36.2 Plus
CG9915-PB 820 CG9915-PB 176..349 385..556 194 36.2 Plus
CG9915-PC 820 CG9915-PC 148..315 388..558 193 36.2 Plus
CG9915-PB 820 CG9915-PB 148..315 388..558 193 36.2 Plus
CG9915-PC 820 CG9915-PC 190..377 385..560 192 35.1 Plus
CG9915-PB 820 CG9915-PB 190..377 385..560 192 35.1 Plus
CG9915-PC 820 CG9915-PC 149..333 382..554 188 34.9 Plus
CG9915-PB 820 CG9915-PB 149..333 382..554 188 34.9 Plus
SRm160-PA 954 CG11274-PA 206..401 393..560 187 33.8 Plus
CG9915-PC 820 CG9915-PC 256..450 365..556 180 35.2 Plus
CG9915-PC 820 CG9915-PC 60..249 380..560 180 32.8 Plus
CG9915-PC 820 CG9915-PC 78..260 393..559 180 33.7 Plus
CG9915-PB 820 CG9915-PB 78..260 393..559 180 33.7 Plus
CG9915-PB 820 CG9915-PB 60..249 380..560 180 32.8 Plus
CG9915-PB 820 CG9915-PB 256..450 365..556 180 35.2 Plus
CG9915-PC 820 CG9915-PC 69..291 329..548 174 31.6 Plus
CG9915-PB 820 CG9915-PB 69..291 329..548 174 31.6 Plus
Srp54-PA 513 CG4602-PA 279..430 383..519 172 36.2 Plus
CG9915-PC 820 CG9915-PC 222..405 387..560 170 34.9 Plus
CG9915-PB 820 CG9915-PB 222..405 387..560 170 34.9 Plus
Srp54-PA 513 CG4602-PA 281..420 391..559 170 35.3 Plus
SRm160-PA 954 CG11274-PA 226..409 339..560 162 31.5 Plus
BOD1-PC 1109 CG5514-PC 566..747 380..560 162 28.4 Plus
BOD1-PA 1109 CG5514-PA 566..747 380..560 162 28.4 Plus
BOD1-PD 1150 CG5514-PD 566..747 380..560 162 28.4 Plus
BOD1-PB 1150 CG5514-PB 566..747 380..560 162 28.4 Plus
BOD1-PE 1151 CG5514-PE 566..747 380..560 162 28.4 Plus
CG9915-PC 820 CG9915-PC 315..480 387..560 158 34.1 Plus
CG9915-PB 820 CG9915-PB 315..480 387..560 158 34.1 Plus
B52-PN 350 CG10851-PN 135..344 307..527 158 28.8 Plus
B52-PC 350 CG10851-PC 135..344 307..527 158 28.8 Plus
B52-PA 350 CG10851-PA 135..344 307..527 158 28.8 Plus
B52-PO 355 CG10851-PO 140..349 307..527 158 28.8 Plus
B52-PM 355 CG10851-PM 140..349 307..527 158 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21601-PA 587 GI21601-PA 1..394 1..392 1771 83.4 Plus
Dmoj\GI17494-PA 415 GI17494-PA 14..243 99..325 319 32.2 Plus
Dmoj\GI12957-PA 1147 GI12957-PA 49..295 95..349 256 26.8 Plus
Dmoj\GI24273-PA 267 GI24273-PA 17..253 94..335 182 29.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18224-PA 540 GL18224-PA 1..540 1..560 2139 82.7 Plus
Dper\GL26256-PA 411 GL26256-PA 15..232 99..325 286 30.2 Plus
Dper\GL25034-PA 1130 GL25034-PA 51..300 99..356 245 26.9 Plus
Dper\GL23664-PA 267 GL23664-PA 31..248 105..330 186 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14208-PA 540 GA14208-PA 1..540 1..560 2139 82.7 Plus
Dpse\GA13578-PA 423 GA13578-PA 15..244 99..325 315 31.4 Plus
Dpse\GA19492-PA 1137 GA19492-PA 58..307 99..356 244 26.9 Plus
Dpse\GA20234-PA 267 GA20234-PA 31..248 105..330 186 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18920-PA 559 GM18920-PA 1..559 1..560 2909 97.7 Plus
Dsec\GM16115-PA 400 GM16115-PA 14..243 99..325 325 31.8 Plus
Dsec\GM24323-PA 1093 GM24323-PA 51..233 95..287 250 30.4 Plus
Dsec\GM25819-PA 267 GM25819-PA 31..248 105..330 185 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16393-PA 559 GD16393-PA 1..559 1..560 2920 98 Plus
Dsim\GD21618-PA 400 GD21618-PA 14..243 99..325 322 31.8 Plus
Dsim\GD12396-PA 1097 GD12396-PA 55..233 99..287 241 30.5 Plus
Dsim\GD20395-PA 267 GD20395-PA 31..248 105..330 188 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16541-PA 582 GJ16541-PA 1..582 1..560 2026 75.7 Plus
Dvir\GJ15154-PA 425 GJ15154-PA 14..243 99..325 323 32.2 Plus
Dvir\GJ13100-PA 1142 GJ13100-PA 65..307 99..349 252 27.2 Plus
Dvir\GJ10846-PA 267 GJ10846-PA 31..253 105..335 183 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24907-PA 596 GK24907-PA 1..548 1..516 1890 73.6 Plus
Dwil\GK15351-PA 421 GK15351-PA 14..243 99..325 313 31.8 Plus
Dwil\GK13831-PA 267 GK13831-PA 31..248 105..330 185 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16978-PA 562 GE16978-PA 1..562 1..560 2290 94.8 Plus
Dyak\GE12968-PA 402 GE12968-PA 14..243 99..325 320 31.8 Plus
Dyak\GE22136-PA 1099 GE22136-PA 57..235 99..287 239 30.5 Plus
Dyak\GE26424-PA 267 GE26424-PA 31..248 105..330 185 28.4 Plus

LD24704.hyp Sequence

Translation from 85 to 1767

> LD24704.hyp
MATRGAGSTVVHTTVTALTVETITNVLTTVTSFHSNSVNISNNNSSSGAA
PGADAAGGDAGGVAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTP
SSQDGLDHETEKDLRILGCELIQTAGILLRLPQVAMATGQVLFQRFFYSK
SFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQKEISPM
VLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYEKHE
KLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWF
GIFRVPMADITDICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTK
EANTPPAVITVDRNNGSHNAWGGFIQRAIPLPLPSEKSPQKDSRSRSRSR
TRTHSRTPRSRSPRSRSPSRERTKKTHRSRSSRSRSRSPPKHKKKSRHYS
RSPTRSNSPHSKHRKSKSSRERSEYYSKKDRSGNPGSSNNLGDGDKYRNS
VSNSGKHSRYSSSSSRRNSGGGGDGRSGGGGGGGGGGNGNHGSRGGHKHR
DGDRSRDRKR*

LD24704.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16903-PA 560 CG16903-PA 1..560 1..560 2918 100 Plus
CycK-PC 400 CG15218-PC 14..243 99..325 302 31.4 Plus
CycK-PB 400 CG15218-PB 14..243 99..325 302 31.4 Plus
CycK-PA 400 CG15218-PA 14..243 99..325 302 31.4 Plus
CycT-PC 1097 CG6292-PC 5..488 49..554 282 24.9 Plus