Clone LD24721 Report

Search the DGRC for LD24721

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:247
Well:21
Vector:pOT2
Associated Gene/TranscriptSgt-RA
Protein status:LD24721.pep: gold
Preliminary Size:1300
Sequenced Size:1270

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5094 2001-01-01 Release 2 assignment
CG5094 2002-03-19 Blastp of sequenced clone
CG5094 2003-01-01 Sim4 clustering to Release 3
Sgt 2008-04-29 Release 5.5 accounting
Sgt 2008-08-15 Release 5.9 accounting
Sgt 2008-12-18 5.12 accounting

Clone Sequence Records

LD24721.complete Sequence

1270 bp (1270 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094801

> LD24721.complete
CACATTTACTTTTCAACTTGTCTGTCGATCGAAATTAAGCGAACAGAAAT
CTAAAGCATAACCAAAATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAAC
ACCATTCGCCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGA
CATGGTGCAAATGATCTATAACATGACCAGCCAATTGACTGGCTTTCCCA
ATTCGAACGCAAATCCTGGCAATGAACAGCAGCCGGGCAATCAGCCACCA
CCGAGCACCTAGAAGTGGATAGAATCCCGATCCCCGATCCCTGCCTGGAT
CGGCGGCACACAGATTAAGTTGTTAAGCTGAAACTATAAATGTATTTATA
ATGTTTAAATGGCTTCTATTACGCATACATACATACATACATATACATTT
TTATCCAATGGAAATAAATAAATGACCGTGCAAATTGCCGCTGTTCCAAT
CGAAAAAAAAAAAAAAAAAA

LD24721.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RA 1291 Sgt-RA 40..1291 1..1252 6260 100 Plus
Sgt.a 1392 Sgt.a 157..1373 38..1254 6085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17472129..17473380 1..1252 6245 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473522..17474775 1..1254 6270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473522..17474775 1..1254 6270 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:46:01 has no hits.

LD24721.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:46:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17472129..17473380 1..1252 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:18 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 67..1062 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:39 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 67..1062 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 67..1062 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:02 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 67..1062 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:43:07 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 1..996 67..1062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:06 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 40..1291 1..1252 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:39 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 40..1291 1..1252 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 33..1284 1..1252 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:02 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 40..1291 1..1252 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:07 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 33..1284 1..1252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17473522..17474773 1..1252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17473522..17474773 1..1252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:46:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17473522..17474773 1..1252 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:57 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473522..17474773 1..1252 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:27 Download gff for LD24721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17473522..17474773 1..1252 100   Plus

LD24721.hyp Sequence

Translation from 66 to 1061

> LD24721.hyp
MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVE
AAPAAAGEEQATTQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFEL
FQSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNP
IFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNF
EKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQ
PMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGGNAPTLPNDMVQMI
YNMTSQLTGFPNSNANPGNEQQPGNQPPPST*

LD24721.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-PB 331 CG5094-PB 1..331 1..331 1702 100 Plus
Sgt-PA 331 CG5094-PA 1..331 1..331 1702 100 Plus
Hop-PA 490 CG2720-PA 306..485 109..287 212 29 Plus
Hop-PA 490 CG2720-PA 7..107 119..219 182 32.7 Plus
CG18472-PA 469 CG18472-PA 224..339 111..225 175 32.8 Plus
unc-45-PA 947 CG2708-PA 6..143 109..237 167 32.6 Plus

LD24721.pep Sequence

Translation from 66 to 1061

> LD24721.pep
MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVE
AAPAAAGEEQATTQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFEL
FQSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNP
IFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNF
EKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQ
PMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGGNAPTLPNDMVQMI
YNMTSQLTGFPNSNANPGNEQQPGNQPPPST*

LD24721.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14798-PA 346 GF14798-PA 1..345 1..330 1174 68.7 Plus
Dana\GF20636-PA 489 GF20636-PA 316..484 123..287 173 26.6 Plus
Dana\GF20636-PA 489 GF20636-PA 7..107 119..219 167 31.7 Plus
Dana\GF23034-PA 521 GF23034-PA 40..152 106..218 155 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21090-PA 334 GG21090-PA 1..334 1..331 1356 78.3 Plus
Dere\GG24711-PA 490 GG24711-PA 306..485 109..287 190 29 Plus
Dere\GG24711-PA 490 GG24711-PA 7..107 119..219 166 33.7 Plus
Dere\GG11514-PA 468 GG11514-PA 228..333 115..219 158 34 Plus
Dere\GG22948-PA 529 GG22948-PA 90..198 116..224 152 33 Plus
Dere\GG17081-PA 520 GG17081-PA 46..136 113..203 150 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11621-PA 361 GH11621-PA 1..329 1..309 1051 65.1 Plus
Dgri\GH11548-PA 490 GH11548-PA 310..485 116..287 183 27.8 Plus
Dgri\GH17416-PA 515 GH17416-PA 35..146 107..218 157 32.1 Plus
Dgri\GH19976-PA 420 GH19976-PA 65..241 74..248 151 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-PB 331 CG5094-PB 1..331 1..331 1702 100 Plus
Sgt-PA 331 CG5094-PA 1..331 1..331 1702 100 Plus
Stip1-PA 490 CG2720-PA 306..485 109..287 212 29 Plus
Stip1-PA 490 CG2720-PA 7..107 119..219 182 32.7 Plus
CG18472-PA 469 CG18472-PA 224..339 111..225 175 32.8 Plus
unc-45-PB 947 CG2708-PB 6..143 109..237 167 32.6 Plus
unc-45-PA 947 CG2708-PA 6..143 109..237 167 32.6 Plus
spag-PA 534 CG13570-PA 96..204 116..224 163 32.1 Plus
PpD3-PC 520 CG8402-PC 47..136 114..203 157 35.6 Plus
PpD3-PA 520 CG8402-PA 47..136 114..203 157 35.6 Plus
PpD3-PB 520 CG8402-PB 47..136 114..203 157 35.6 Plus
CG14894-PB 263 CG14894-PB 47..239 74..251 150 27.2 Plus
CG14894-PA 263 CG14894-PA 47..239 74..251 150 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17924-PA 346 GI17924-PA 1..345 1..330 1130 66.9 Plus
Dmoj\GI17037-PA 490 GI17037-PA 310..485 116..287 185 28.4 Plus
Dmoj\GI17037-PA 490 GI17037-PA 7..107 119..219 162 32.7 Plus
Dmoj\GI22745-PA 515 GI22745-PA 34..146 106..218 162 31.9 Plus
Dmoj\GI10560-PA 450 GI10560-PA 201..314 116..228 152 35.1 Plus
Dmoj\GI20263-PA 543 GI20263-PA 106..243 116..248 152 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15957-PA 354 GL15957-PA 1..353 1..330 1072 63.5 Plus
Dper\GL25924-PA 531 GL25924-PA 305..485 109..288 198 29.2 Plus
Dper\GL25924-PA 531 GL25924-PA 7..107 119..219 160 31.7 Plus
Dper\GL24300-PA 522 GL24300-PA 43..153 108..218 157 30.6 Plus
Dper\GL16565-PA 425 GL16565-PA 31..256 6..232 153 23.8 Plus
Dper\GL14152-PA 586 GL14152-PA 89..172 116..194 150 42.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18656-PA 354 GA18656-PA 1..353 1..330 1072 63.5 Plus
Dpse\GA15447-PA 489 GA15447-PA 305..484 109..287 198 29.3 Plus
Dpse\GA15447-PA 489 GA15447-PA 7..107 119..219 160 31.7 Plus
Dpse\GA26563-PA 522 GA26563-PA 43..153 108..218 156 30.6 Plus
Dpse\GA12369-PA 573 GA12369-PA 96..233 116..248 153 29.7 Plus
Dpse\GA19838-PA 586 GA19838-PA 89..172 116..194 149 42.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17241-PA 329 GM17241-PA 1..329 1..331 1441 90.1 Plus
Dsec\GM15022-PA 214 GM15022-PA 30..209 109..287 193 29 Plus
Dsec\GM16733-PA 490 GM16733-PA 306..485 109..287 191 29 Plus
Dsec\GM10353-PA 808 GM10353-PA 567..677 116..225 173 35.1 Plus
Dsec\GM16733-PA 490 GM16733-PA 7..107 119..219 161 31.7 Plus
Dsec\GM18312-PA 529 GM18312-PA 96..203 116..229 155 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24111-PA 313 GD24111-PA 1..313 1..331 1419 86.4 Plus
Dsim\Hop-PA 490 GD23015-PA 306..485 109..287 191 29 Plus
Dsim\Hop-PA 490 GD23015-PA 7..107 119..219 165 32.7 Plus
Dsim\GD21316-PA 437 GD21316-PA 196..302 116..221 165 34.6 Plus
Dsim\GD19966-PA 947 GD19966-PA 6..143 109..237 158 32.6 Plus
Dsim\GD18641-PA 520 GD18641-PA 46..136 113..203 149 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17696-PA 356 GJ17696-PA 1..356 1..331 1073 63.5 Plus
Dvir\GJ24688-PA 490 GJ24688-PA 310..485 116..287 188 28.4 Plus
Dvir\GJ24688-PA 490 GJ24688-PA 7..107 119..219 163 32.7 Plus
Dvir\GJ22746-PA 515 GJ22746-PA 35..146 107..218 158 32.1 Plus
Dvir\GJ20216-PA 536 GJ20216-PA 105..258 116..254 155 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24147-PA 356 GK24147-PA 1..340 1..328 1050 61 Plus
Dwil\GK18373-PA 492 GK18373-PA 310..487 114..287 186 28.8 Plus
Dwil\GK11960-PA 522 GK11960-PA 46..153 111..218 154 31.5 Plus
Dwil\GK10216-PA 394 GK10216-PA 31..251 6..232 151 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12794-PA 332 GE12794-PA 1..331 1..330 1388 81 Plus
Dyak\Hop-PA 490 GE16725-PA 306..485 109..287 190 29 Plus
Dyak\Hop-PA 490 GE16725-PA 7..107 119..219 167 33.7 Plus
Dyak\GE25980-PA 520 GE25980-PA 46..136 113..203 155 36.3 Plus
Dyak\GE14385-PA 535 GE14385-PA 96..204 116..224 153 33 Plus