Clone LD24746 Report

Search the DGRC for LD24746

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:247
Well:46
Vector:pOT2
Associated Gene/Transcriptshu-RA
Protein status:LD24746.pep: gold
Preliminary Size:1659
Sequenced Size:1687

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4735 2001-01-01 Release 2 assignment
CG4735 2001-09-19 Blastp of sequenced clone
CG4735 2003-01-01 Sim4 clustering to Release 3
shu 2008-04-29 Release 5.5 accounting
shu 2008-08-15 Release 5.9 accounting
shu 2008-12-18 5.12 accounting

Clone Sequence Records

LD24746.complete Sequence

1687 bp (1687 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058554

> LD24746.complete
AATAGCGCCAACTCAGCGCATTCCGGAATTCGTTTCGTAAATATTCTGTA
AATTTTGCGATAATGGAAGAAAACTTCGAACCGTACACCCCACAGTTGCT
CAAGAATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAGTTCG
AGGTCGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGACAGC
GACAGCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGGAGCT
ACGTTCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATGAGCG
AGATCGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGTGGAT
CGGGAGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTGGCTA
CTGGGAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGCAGCA
AATTCGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGAGGTC
GCCGTCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCTCCTA
CAAGCTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCCAAGG
CGGATGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGGAGAT
GCGAAGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTTGTGT
GGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCGGTGA
AGCTCGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGTGAGC
TCACTGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGCAAAC
TGAACTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAACAAGA
TGAACAAGCCGAAGCGCGCCTGCATCATGATGAAGGCCTTACGGCACCTG
ACCATGGGCAATCCGTCTTGCAAGGCGCTCTTCCAGGAGGGACGCGCCCT
GGCCGCTCTGGGCGAGTACAACTTGGCCCGCAACGCTTACCTGCAGGCGC
AGGCCAAGCAGCCGGCGAACAAGGAGATCAGCGACGAGATTATCAGCATG
AACAAGAGAATCAGCAAGTATGAGGAGGCCAGTCGCGATATATGGGCACG
TGCCTTCTCGTTAAAGAACTCAAAGTCAGACGTCCGCAAAACGCCTGCTC
AGCTGGAGAAGGAGGCAAAGGAACAGGATTTCAATGACAAAATGGAAGAT
TTGATTAGGCGGTTTAAGAACACTTCAGATCAACAAGTGAGCTTTTCACG
TAAATCTTATTCGAACGCTCAGTTCGACGCGACTTGCAAATTGGCCAAGG
AACACAACCTGAAGCTAACTTTGTCTCCCATCCAAGAGGATGTTCTGACA
TTGTCTAAGCCGGATGTTAAGTTCGCTTGAGCTTACTAAGAAGCCCCAGT
ATTTCATATTTCATATCTTACTCAAAAAAAAAAACATACCAAACATGAAG
GTAATTTAGTTCCAAGTTCTAGAAGAGCAGTATCATTAGTTATTTCGATA
TTAGCAACATGAATATCGTAAGCCCAGACGAATGTTAACGTTTTTTGTTA
TTTAGAGCAACGTAGACCTTAAGTTGTTAAAAACCACAATAAAAGTAATG
CACGGCAGCTACATAAAAAAAAAAAAAAAAAAAAAAA

LD24746.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
shu.a 2140 shu.a 24..1689 1..1666 8330 100 Plus
shu-RA 1964 shu-RA 124..1789 1..1666 8330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19727550..19728340 1664..873 3910 99.9 Minus
chr2R 21145070 chr2R 19728416..19729166 872..122 3740 99.9 Minus
chr2R 21145070 chr2R 19729223..19729344 122..1 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23841459..23842252 1666..873 3970 100 Minus
2R 25286936 2R 23842328..23843078 872..122 3755 100 Minus
2R 25286936 2R 23843135..23843256 122..1 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23842658..23843451 1666..873 3970 100 Minus
2R 25260384 2R 23843527..23844277 872..122 3755 100 Minus
2R 25260384 2R 23844334..23844455 122..1 610 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:35:34 has no hits.

LD24746.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:12 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19727550..19728340 873..1664 99 <- Minus
chr2R 19728416..19729166 122..872 99 <- Minus
chr2R 19729224..19729344 1..121 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:22 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 63..1430 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:06 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 63..1430 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:18 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 63..1430 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:40 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 63..1430 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:00 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 63..1430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:38 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 24..1687 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:05 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 24..1687 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:18 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 31..1694 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:40 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 24..1687 1..1664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:00 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 31..1694 1..1664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:12 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23841461..23842252 873..1664 100 <- Minus
2R 23842328..23843078 122..872 100 <- Minus
2R 23843136..23843256 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:12 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23841461..23842252 873..1664 100 <- Minus
2R 23842328..23843078 122..872 100 <- Minus
2R 23843136..23843256 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:12 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23841461..23842252 873..1664 100 <- Minus
2R 23842328..23843078 122..872 100 <- Minus
2R 23843136..23843256 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:18 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19728984..19729775 873..1664 100 <- Minus
arm_2R 19729851..19730601 122..872 100 <- Minus
arm_2R 19730659..19730779 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:30 Download gff for LD24746.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23842678..23843469 873..1664 100 <- Minus
2R 23843545..23844295 122..872 100 <- Minus
2R 23844353..23844473 1..121 100   Minus

LD24746.pep Sequence

Translation from 62 to 1429

> LD24746.pep
MEENFEPYTPQLLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSDS
DYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV
PNKARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRS
MRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSLIGDAKGI
DAIPQEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNY
CRMANDEEERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGN
PSCKALFQEGRALAALGEYNLARNAYLQAQAKQPANKEISDEIISMNKRI
SKYEEASRDIWARAFSLKNSKSDVRKTPAQLEKEAKEQDFNDKMEDLIRR
FKNTSDQQVSFSRKSYSNAQFDATCKLAKEHNLKLTLSPIQEDVLTLSKP
DVKFA*

LD24746.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12456-PA 453 GF12456-PA 1..452 1..453 1436 59.7 Plus
Dana\GF19503-PA 334 GF19503-PA 23..301 70..359 256 27.3 Plus
Dana\GF14673-PA 440 GF14673-PA 13..130 82..207 154 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19994-PA 453 GG19994-PA 1..453 1..455 2095 85.3 Plus
Dere\GG20452-PA 195 GG20452-PA 1..184 151..354 333 39.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22913-PA 465 GH22913-PA 1..465 1..453 1282 55 Plus
Dgri\GH24794-PA 176 GH24794-PA 1..176 290..453 365 47.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
shu-PA 455 CG4735-PA 1..455 1..455 2339 100 Plus
CG30075-PA 195 CG30075-PA 36..188 206..358 282 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18403-PA 446 GI18403-PA 1..446 1..453 1297 54.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11067-PA 441 GL11067-PA 1..437 1..449 1306 57.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18393-PA 441 GA18393-PA 1..437 1..449 1311 57.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15507-PA 453 GM15507-PA 1..453 1..455 2281 94.1 Plus
Dsec\GM21539-PA 195 GM21539-PA 36..188 206..358 279 41.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25009-PA 453 GD25009-PA 1..453 1..455 2280 93.8 Plus
Dsim\GD11049-PA 195 GD11049-PA 35..188 205..358 285 41.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21483-PA 449 GJ21483-PA 8..449 9..453 1275 56.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15807-PA 455 GK15807-PA 1..451 1..449 1263 53.7 Plus
Dwil\GK10287-PA 449 GK10287-PA 11..445 26..449 1127 50.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11527-PA 453 GE11527-PA 1..453 1..455 2082 84.4 Plus
Dyak\GE13584-PA 191 GE13584-PA 12..184 177..358 349 42.3 Plus

LD24746.hyp Sequence

Translation from 62 to 1429

> LD24746.hyp
MEENFEPYTPQLLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSDS
DYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV
PNKARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRS
MRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSLIGDAKGI
DAIPQEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNY
CRMANDEEERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGN
PSCKALFQEGRALAALGEYNLARNAYLQAQAKQPANKEISDEIISMNKRI
SKYEEASRDIWARAFSLKNSKSDVRKTPAQLEKEAKEQDFNDKMEDLIRR
FKNTSDQQVSFSRKSYSNAQFDATCKLAKEHNLKLTLSPIQEDVLTLSKP
DVKFA*

LD24746.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
shu-PA 455 CG4735-PA 1..455 1..455 2339 100 Plus
CG30075-PA 195 CG30075-PA 36..188 206..358 282 38.6 Plus