Clone LD24793 Report

Search the DGRC for LD24793

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:247
Well:93
Vector:pOT2
Associated Gene/TranscriptRef1-RA
Protein status:LD24793.pep: gold
Preliminary Size:1317
Sequenced Size:1322

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1101 2001-01-01 Release 2 assignment
CG1101 2002-12-11 Blastp of sequenced clone
CG1101 2003-01-01 Sim4 clustering to Release 3
Aly 2008-04-29 Release 5.5 accounting
Aly 2008-08-15 Release 5.9 accounting
Aly 2008-12-18 5.12 accounting

Clone Sequence Records

LD24793.complete Sequence

1322 bp (1322 high quality bases) assembled on 2002-12-11

GenBank Submission: AF172637

> LD24793.complete
TGCGTCGTTTTTGCAAAGTTTTGTGAAATTCCACGCGCTCCTCCTTAAAA
AAAAAACGCTTTAAACACATTCTTCAGTAGCAAGCAGAGACCCAATCTTT
CCCTTGACTTTAAACGATCTCCAAGTAGTCAATACAGCACGCAATAAGCA
AGATGGTGGACAAAATTGAAATGAGCCTCGACGACATCATTAAGTCCACA
CGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGACCAGGTGGCGCCCG
AAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGCCCGCCGCGGCGGAG
CCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCGTGCTCAAGGGCCCG
CGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCCAAGTTCCCACGGGG
CGATGTGAACAGCGCTTGGAAGCACGATATGTACGACGGACCGAAGAGGG
GTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCATCGTCGGTAACCTG
GACTACGGCGTATCCAACACGGACATCAAGGAGCTCTTCAACGACTTTGG
TCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTCCGGTCGCTCGTTGG
GCACCGCTGACGTGATTTTCGAACGTCGCGCCGACGCCTTGAAGGCCATT
AAACAGTACCATGGCGTACCTTTGGACGGACGCCCTATGACCATTCAGCT
GGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGTAGCCGCCACCGATG
TCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCATTCAAGCGTGGTGGT
GGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAACGTCCGGTCGGTGG
CAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAAGGCCCCGCCCACTG
CTGAGGAGCTGGACGCCGAACTGGACTCATACATCAACGACATGAAGATC
TAAATAGTGAATAGTCTGAATTAGTCTAACAAGAATAGAAGAGCAGCCCA
ATCTATAGTTTTAAGCCTACCATATGGACACCCCCCGCATGGTACATAAA
TGCAAACGCATCGACAACGCCGCGCCCAGGAGCAGATCTTTGAAAGCATC
GGACATCAAATCAATCAACCACTTGCGCATTTATCCATTAATTGTTAGTT
TTGCCAATGCGGCGGATGTTAAGATAACTGAAATACATTTGATGCTGTAT
TTATTGTATTTAGAAATGCGCTTTATCAAGTTCGACGATAAATTGATGGA
CCTTGTCAAATTAAACTGAATTGTAATAAATACTAGAATTAATTTCGTGA
CCAAAAAAAAAAAAAAAAAAAA

LD24793.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
ref1-RA 1547 ref1-RA 110..1414 1..1305 6525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2903933..2904437 1302..798 2525 100 Minus
chr3R 27901430 chr3R 2905992..2906389 399..1 1945 99.7 Minus
chr3R 27901430 chr3R 2905282..2905485 601..398 1020 100 Minus
chr3R 27901430 chr3R 2904848..2905049 801..600 1010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7077901..7078408 1305..798 2540 100 Minus
3R 32079331 3R 7079963..7080361 399..1 1995 100 Minus
3R 32079331 3R 7079253..7079456 601..398 1020 100 Minus
3R 32079331 3R 7078819..7079020 801..600 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6818732..6819239 1305..798 2540 100 Minus
3R 31820162 3R 6820794..6821192 399..1 1995 100 Minus
3R 31820162 3R 6820084..6820287 601..398 1020 100 Minus
3R 31820162 3R 6819650..6819851 801..600 1010 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:35:36 has no hits.

LD24793.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:14 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2903933..2904436 799..1302 100 <- Minus
chr3R 2904851..2905048 601..798 100 <- Minus
chr3R 2905283..2905484 399..600 100 <- Minus
chr3R 2905993..2906389 1..398 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:29 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 1..801 153..953 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:34 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 1..801 153..953 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:22 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 1..801 153..953 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:11 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 1..801 153..953 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:02 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 1..801 153..953 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:30 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 44..1345 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:34 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 44..1345 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:22 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 27..1328 1..1302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:11 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Aly-RA 44..1345 1..1302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:02 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
Ref1-RA 27..1328 1..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:14 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7078822..7079019 601..798 100 <- Minus
3R 7079254..7079455 399..600 100 <- Minus
3R 7079964..7080361 1..398 100   Minus
3R 7077904..7078407 799..1302 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:14 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7078822..7079019 601..798 100 <- Minus
3R 7079254..7079455 399..600 100 <- Minus
3R 7079964..7080361 1..398 100   Minus
3R 7077904..7078407 799..1302 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:14 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7078822..7079019 601..798 100 <- Minus
3R 7079254..7079455 399..600 100 <- Minus
3R 7079964..7080361 1..398 100   Minus
3R 7077904..7078407 799..1302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:22 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2903626..2904129 799..1302 100 <- Minus
arm_3R 2904544..2904741 601..798 100 <- Minus
arm_3R 2904976..2905177 399..600 100 <- Minus
arm_3R 2905686..2906083 1..398 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:53 Download gff for LD24793.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6818735..6819238 799..1302 100 <- Minus
3R 6819653..6819850 601..798 100 <- Minus
3R 6820085..6820286 399..600 100 <- Minus
3R 6820795..6821192 1..398 100   Minus

LD24793.pep Sequence

Translation from 152 to 952

> LD24793.pep
MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA
NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG
AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG
TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV
KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA
EELDAELDSYINDMKI*

LD24793.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17326-PA 275 GF17326-PA 1..275 1..266 922 77.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10124-PA 266 GG10124-PA 1..266 1..266 1281 95.1 Plus
Dere\GG10249-PA 222 GG10249-PA 1..156 1..195 267 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18594-PA 274 GH18594-PA 1..274 1..266 826 75.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-PA 266 CG1101-PA 1..266 1..266 1378 100 Plus
Ref2-PC 220 CG17031-PC 1..192 1..229 253 34.8 Plus
Ref2-PB 220 CG17031-PB 1..192 1..229 253 34.8 Plus
Ref2-PA 220 CG17031-PA 1..192 1..229 253 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23076-PA 277 GI23076-PA 1..277 1..266 858 71.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12678-PA 284 GL12678-PA 1..284 1..266 837 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10707-PA 284 GA10707-PA 1..284 1..266 837 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10513-PA 266 GM10513-PA 1..266 1..266 1310 97.4 Plus
Dsec\GM26087-PA 207 GM26087-PA 1..193 1..230 280 35.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19510-PA 273 GD19510-PA 1..266 1..266 1313 97.4 Plus
Dsim\GD22109-PA 210 GD22109-PA 1..193 1..230 272 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22697-PA 274 GJ22697-PA 1..274 1..266 984 77.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12741-PA 280 GK12741-PA 1..280 1..266 801 71.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25821-PA 266 GE25821-PA 1..266 1..266 1276 94.7 Plus
Dyak\GE11125-PA 116 GE11125-PA 1..82 1..82 359 91.5 Plus
Dyak\GE12174-PA 249 GE12174-PA 1..141 5..183 274 40.2 Plus

LD24793.hyp Sequence

Translation from 152 to 952

> LD24793.hyp
MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA
NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG
AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG
TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV
KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA
EELDAELDSYINDMKI*

LD24793.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ref1-PA 266 CG1101-PA 1..266 1..266 1378 100 Plus
Ref2-PC 220 CG17031-PC 1..192 1..229 253 34.8 Plus
Ref2-PB 220 CG17031-PB 1..192 1..229 253 34.8 Plus
Ref2-PA 220 CG17031-PA 1..192 1..229 253 34.8 Plus