BDGP Sequence Production Resources |
Search the DGRC for LD24793
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 247 |
Well: | 93 |
Vector: | pOT2 |
Associated Gene/Transcript | Ref1-RA |
Protein status: | LD24793.pep: gold |
Preliminary Size: | 1317 |
Sequenced Size: | 1322 |
Gene | Date | Evidence |
---|---|---|
CG1101 | 2001-01-01 | Release 2 assignment |
CG1101 | 2002-12-11 | Blastp of sequenced clone |
CG1101 | 2003-01-01 | Sim4 clustering to Release 3 |
Aly | 2008-04-29 | Release 5.5 accounting |
Aly | 2008-08-15 | Release 5.9 accounting |
Aly | 2008-12-18 | 5.12 accounting |
1322 bp (1322 high quality bases) assembled on 2002-12-11
GenBank Submission: AF172637
> LD24793.complete TGCGTCGTTTTTGCAAAGTTTTGTGAAATTCCACGCGCTCCTCCTTAAAA AAAAAACGCTTTAAACACATTCTTCAGTAGCAAGCAGAGACCCAATCTTT CCCTTGACTTTAAACGATCTCCAAGTAGTCAATACAGCACGCAATAAGCA AGATGGTGGACAAAATTGAAATGAGCCTCGACGACATCATTAAGTCCACA CGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGACCAGGTGGCGCCCG AAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGCCCGCCGCGGCGGAG CCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCGTGCTCAAGGGCCCG CGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCCAAGTTCCCACGGGG CGATGTGAACAGCGCTTGGAAGCACGATATGTACGACGGACCGAAGAGGG GTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCATCGTCGGTAACCTG GACTACGGCGTATCCAACACGGACATCAAGGAGCTCTTCAACGACTTTGG TCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTCCGGTCGCTCGTTGG GCACCGCTGACGTGATTTTCGAACGTCGCGCCGACGCCTTGAAGGCCATT AAACAGTACCATGGCGTACCTTTGGACGGACGCCCTATGACCATTCAGCT GGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGTAGCCGCCACCGATG TCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCATTCAAGCGTGGTGGT GGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAACGTCCGGTCGGTGG CAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAAGGCCCCGCCCACTG CTGAGGAGCTGGACGCCGAACTGGACTCATACATCAACGACATGAAGATC TAAATAGTGAATAGTCTGAATTAGTCTAACAAGAATAGAAGAGCAGCCCA ATCTATAGTTTTAAGCCTACCATATGGACACCCCCCGCATGGTACATAAA TGCAAACGCATCGACAACGCCGCGCCCAGGAGCAGATCTTTGAAAGCATC GGACATCAAATCAATCAACCACTTGCGCATTTATCCATTAATTGTTAGTT TTGCCAATGCGGCGGATGTTAAGATAACTGAAATACATTTGATGCTGTAT TTATTGTATTTAGAAATGCGCTTTATCAAGTTCGACGATAAATTGATGGA CCTTGTCAAATTAAACTGAATTGTAATAAATACTAGAATTAATTTCGTGA CCAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ref1-RA | 1547 | ref1-RA | 110..1414 | 1..1305 | 6525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2903933..2904437 | 1302..798 | 2525 | 100 | Minus |
chr3R | 27901430 | chr3R | 2905992..2906389 | 399..1 | 1945 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 2905282..2905485 | 601..398 | 1020 | 100 | Minus |
chr3R | 27901430 | chr3R | 2904848..2905049 | 801..600 | 1010 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7077901..7078408 | 1305..798 | 2540 | 100 | Minus |
3R | 32079331 | 3R | 7079963..7080361 | 399..1 | 1995 | 100 | Minus |
3R | 32079331 | 3R | 7079253..7079456 | 601..398 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 7078819..7079020 | 801..600 | 1010 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6818732..6819239 | 1305..798 | 2540 | 100 | Minus |
3R | 31820162 | 3R | 6820794..6821192 | 399..1 | 1995 | 100 | Minus |
3R | 31820162 | 3R | 6820084..6820287 | 601..398 | 1020 | 100 | Minus |
3R | 31820162 | 3R | 6819650..6819851 | 801..600 | 1010 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2903933..2904436 | 799..1302 | 100 | <- | Minus |
chr3R | 2904851..2905048 | 601..798 | 100 | <- | Minus |
chr3R | 2905283..2905484 | 399..600 | 100 | <- | Minus |
chr3R | 2905993..2906389 | 1..398 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 1..801 | 153..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 1..801 | 153..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ref1-RA | 1..801 | 153..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 1..801 | 153..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ref1-RA | 1..801 | 153..953 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 44..1345 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 44..1345 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ref1-RA | 27..1328 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Aly-RA | 44..1345 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ref1-RA | 27..1328 | 1..1302 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7078822..7079019 | 601..798 | 100 | <- | Minus |
3R | 7079254..7079455 | 399..600 | 100 | <- | Minus |
3R | 7079964..7080361 | 1..398 | 100 | Minus | |
3R | 7077904..7078407 | 799..1302 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7078822..7079019 | 601..798 | 100 | <- | Minus |
3R | 7079254..7079455 | 399..600 | 100 | <- | Minus |
3R | 7079964..7080361 | 1..398 | 100 | Minus | |
3R | 7077904..7078407 | 799..1302 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7078822..7079019 | 601..798 | 100 | <- | Minus |
3R | 7079254..7079455 | 399..600 | 100 | <- | Minus |
3R | 7079964..7080361 | 1..398 | 100 | Minus | |
3R | 7077904..7078407 | 799..1302 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2903626..2904129 | 799..1302 | 100 | <- | Minus |
arm_3R | 2904544..2904741 | 601..798 | 100 | <- | Minus |
arm_3R | 2904976..2905177 | 399..600 | 100 | <- | Minus |
arm_3R | 2905686..2906083 | 1..398 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6818735..6819238 | 799..1302 | 100 | <- | Minus |
3R | 6819653..6819850 | 601..798 | 100 | <- | Minus |
3R | 6820085..6820286 | 399..600 | 100 | <- | Minus |
3R | 6820795..6821192 | 1..398 | 100 | Minus |
Translation from 152 to 952
> LD24793.pep MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA EELDAELDSYINDMKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17326-PA | 275 | GF17326-PA | 1..275 | 1..266 | 922 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10124-PA | 266 | GG10124-PA | 1..266 | 1..266 | 1281 | 95.1 | Plus |
Dere\GG10249-PA | 222 | GG10249-PA | 1..156 | 1..195 | 267 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18594-PA | 274 | GH18594-PA | 1..274 | 1..266 | 826 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ref1-PA | 266 | CG1101-PA | 1..266 | 1..266 | 1378 | 100 | Plus |
Ref2-PC | 220 | CG17031-PC | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PB | 220 | CG17031-PB | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PA | 220 | CG17031-PA | 1..192 | 1..229 | 253 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23076-PA | 277 | GI23076-PA | 1..277 | 1..266 | 858 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12678-PA | 284 | GL12678-PA | 1..284 | 1..266 | 837 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10707-PA | 284 | GA10707-PA | 1..284 | 1..266 | 837 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10513-PA | 266 | GM10513-PA | 1..266 | 1..266 | 1310 | 97.4 | Plus |
Dsec\GM26087-PA | 207 | GM26087-PA | 1..193 | 1..230 | 280 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19510-PA | 273 | GD19510-PA | 1..266 | 1..266 | 1313 | 97.4 | Plus |
Dsim\GD22109-PA | 210 | GD22109-PA | 1..193 | 1..230 | 272 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22697-PA | 274 | GJ22697-PA | 1..274 | 1..266 | 984 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12741-PA | 280 | GK12741-PA | 1..280 | 1..266 | 801 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25821-PA | 266 | GE25821-PA | 1..266 | 1..266 | 1276 | 94.7 | Plus |
Dyak\GE11125-PA | 116 | GE11125-PA | 1..82 | 1..82 | 359 | 91.5 | Plus |
Dyak\GE12174-PA | 249 | GE12174-PA | 1..141 | 5..183 | 274 | 40.2 | Plus |
Translation from 152 to 952
> LD24793.hyp MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA EELDAELDSYINDMKI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ref1-PA | 266 | CG1101-PA | 1..266 | 1..266 | 1378 | 100 | Plus |
Ref2-PC | 220 | CG17031-PC | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PB | 220 | CG17031-PB | 1..192 | 1..229 | 253 | 34.8 | Plus |
Ref2-PA | 220 | CG17031-PA | 1..192 | 1..229 | 253 | 34.8 | Plus |