Clone LD24837 Report

Search the DGRC for LD24837

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:37
Vector:pOT2
Associated Gene/TranscriptRIOK1-RA
Protein status:LD24837.pep: gold
Preliminary Size:2257
Sequenced Size:2254

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11660 2001-01-01 Release 2 assignment
CG11660 2001-07-04 Blastp of sequenced clone
CG11660 2003-01-01 Sim4 clustering to Release 3
CG11660 2008-04-29 Release 5.5 accounting
CG11660 2008-08-15 Release 5.9 accounting
CG11660 2008-12-18 5.12 accounting

Clone Sequence Records

LD24837.complete Sequence

2254 bp (2254 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051711

> LD24837.complete
AGCTGTTAAGCTAGCTGATTGCCAAAGCCAACAATTGAATTTCTTTAAAT
TTTATTTCAGTTGCAACAAATTAAGATACAAATAATAGTTTTCGCACGAT
ATTAAGCCCGTTTGGCAAGACAAAATCGCTTTAATATTTATCCGCACATT
TGCTTACTGCATATAGCCATCTTAGGAAAATACCAAAACAATGTCGACGC
TTCTTTGTGAATGGCATTCGCAACACGTGCGATTGGTTGTACAAATTTGT
GAAATTTTGAGCTTTAATAGTAGTTACTGCGCATCTCGCGATGAACAACG
ACAGCCACAAATATAGCGACGCCGAGGAGGACGAAGAAGACCTGCGAAGT
TCCGAGTGGACAAACGACTTCAAGAACCTCACATTGAAGCACGAGATCTT
TAAGGATATTAAACTGACACCCAAAGAGGACTGTGATGACCTGGCACAAG
TTATAGCAACCGCCAACGAAGAGGATGAACCGGAGGACGAAGAGCCAGAG
GAATACGATGAAGACGATTACGACGATATCGGAGATGACTATGATACGTA
TGAGGAGGCCTATACGGGCTTTAACAAGCTTCACGTTCAGCCGCAGCTAA
CAAATGCCAGTGGAGGTGGCTCCGGCGGTGGCGCTGGAGGTGCATCTGGT
GGCTCACAACGCGTCAGCAGCTACCAACCAAACGAAAAGCTGTTGCGCCG
CTACTCCGCCCGCATTAATGTAGAAAAGTACGATCCCACCACAAATATGA
GCGCGCAGGCGGCCAACCGGCTGGTGAACTTCGATCGGCGCGATAGGACA
CAGGTGCGTGACAAACACGACCGAGCCACTGCGGAACAGGTAATGGATCC
ACGTACCCGGATGATACTCTTCAAGCTGCTGAATCGCGGAATGATACAGG
AAATCAACGGCTGCATTTCTACGGGCAAAGAGGCTAATGTCTATCACGCC
GTTTCCAAAAATGGTGAAGAGGAGTTTGCCATCAAGATCTACAAGACGTC
CATTCTAGTATTTAAGGACCGCGACAAATATGTGTCAGGCGAATTCCGGT
TTCGACACGGCTACTGCAAGCACAATCCGCGCAAAATGGTGCGTACCTGG
GCGGAGAAGGAAATGCGAAACTACTTGCGAATGCGCAACGCTGGCGTTCC
TGTACCGGAGCCAATCCTGCTACGCTCACATGTACTGGTCATGCGGTTTT
GCGGTCGCGACGGATGGCCTGCGCCAAAGCTTAAGGATGTTGAGCTCAGC
ACTTCAAAGGCGCGAGAGTTGTACAGGGATTGCGTAGTCATCATGTGGCG
CATTTACAATCAATGCCGTCTTGTGCACGCTGATCTTTCAGAGTTTAACA
TCCTGCTGCAGGATGGTCAGCTGGTCATTATCGATGTAAGCCAGTCAGTG
GAGCACGATCATCCGCATTCCTTTGACTTCCTGCGCAAGGATTGCACCAA
CATATCCGAGTTCTTCCGAAAACGTGCGGTGGCAACGATGACGGTGAAGG
AACTTTTTGATTTCATCACCGATCAGACTATAACCACAGAGAACATGGAG
GAGTGCCTGGAACGCATATCTGAGCGAATCAAGGACCGCGATTTCGATGC
CATCTCGGCTCAGGAGAAGATCGATGAGGCTGTTTGGCAGAACACCTACA
TTCCCAAAAGGTTGGACGAGGTGCGCCATTTTGAGAGAGATGTAGCCAAG
GCCAAGCAAGGGGTGCAGCAAAATCTCATCTACGGAAAGATCACTGGTCT
GACTTCGGATCTGGACGTGCAGCAAAAGCCAGACGTGCTGCAATCCTCGA
CCGCCAAAGAGGATGACGGTAGTGAGGCCCAAACGAGCGGCAGTGAGGAC
GAAGACAACTCGCAGGATAACGACAACGATGAAGATGCCAAGAAGTTTAA
GAATTCGGCAAGACCACGAGAAGAGTCTCCGGAGAGTAAAAAGGCTCGCA
AAAAGGCCGTCAAAGATGCGAAAGCCGAGCAGCGCAAGGTTAAAGTGAAA
AAGCACGTGAAGAAACGCAAAGAGAAAATGGGCAGCATGAAAAAATAGGA
TTGTTTCTGAATAGAGTTAATATAGCTGTGAGTTTAAGTTCTAAATATTT
TATGCAAGTTTTGTAACTTGGCTCCATCGTATATAATGAAATTATATAAA
AACGATGTAGCTAATCATTTTCTTATGGTATTACTATACCAAATGGCTGC
GGGGAACGCCGCAGCTATAAATGAAATATTAAACACAAAAAAAAAAAAAA
AAAA

LD24837.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11660-RA 2311 CG11660-RA 1..2237 1..2237 11170 99.9 Plus
CG11660-RB 2225 CG11660-RB 178..2151 264..2237 9840 99.8 Plus
CG11660-RB 2225 CG11660-RB 1..112 159..270 560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11637774..11639095 1672..351 6280 98.3 Minus
chr3L 24539361 chr3L 11637151..11637716 2234..1669 2770 99.3 Minus
chr3L 24539361 chr3L 11639307..11639576 270..1 1350 100 Minus
chr3L 24539361 chr3L 11639155..11639241 350..264 420 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11646859..11648180 1672..351 6595 99.9 Minus
3L 28110227 3L 11646233..11646801 2237..1669 2845 100 Minus
3L 28110227 3L 11648392..11648661 270..1 1350 100 Minus
3L 28110227 3L 11648240..11648326 350..264 420 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11639959..11641280 1672..351 6595 99.9 Minus
3L 28103327 3L 11639333..11639901 2237..1669 2845 100 Minus
3L 28103327 3L 11641492..11641761 270..1 1350 100 Minus
3L 28103327 3L 11641340..11641426 350..264 420 98.8 Minus
Blast to na_te.dros performed on 2019-03-16 02:15:57 has no hits.

LD24837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:16:36 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11637149..11637714 1671..2236 99 <- Minus
chr3L 11637776..11639095 351..1670 98 <- Minus
chr3L 11639155..11639234 271..350 100 <- Minus
chr3L 11639307..11639576 1..270 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:34 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RB 1..1758 291..2048 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:41 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RB 1..1758 291..2048 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:27 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RA 1..1758 291..2048 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:17 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RB 1..1758 291..2048 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:03:07 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
RIOK1-RA 1..1758 291..2048 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:36 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RA 1..2236 1..2236 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:41 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RA 1..2236 1..2236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:27 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RA 1..2049 188..2236 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:17 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
CG11660-RA 1..2236 1..2236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:03:07 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
RIOK1-RA 1..2049 188..2236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:36 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11646234..11646799 1671..2236 100 <- Minus
3L 11646861..11648180 351..1670 99 <- Minus
3L 11648240..11648319 271..350 100 <- Minus
3L 11648392..11648661 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:36 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11646234..11646799 1671..2236 100 <- Minus
3L 11646861..11648180 351..1670 99 <- Minus
3L 11648240..11648319 271..350 100 <- Minus
3L 11648392..11648661 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:36 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11646234..11646799 1671..2236 100 <- Minus
3L 11646861..11648180 351..1670 99 <- Minus
3L 11648240..11648319 271..350 100 <- Minus
3L 11648392..11648661 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:27 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11639334..11639899 1671..2236 100 <- Minus
arm_3L 11639961..11641280 351..1670 99 <- Minus
arm_3L 11641340..11641419 271..350 100 <- Minus
arm_3L 11641492..11641761 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:58 Download gff for LD24837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11639334..11639899 1671..2236 100 <- Minus
3L 11639961..11641280 351..1670 99 <- Minus
3L 11641340..11641419 271..350 100 <- Minus
3L 11641492..11641761 1..270 100   Minus

LD24837.pep Sequence

Translation from 290 to 2047

> LD24837.pep
MNNDSHKYSDAEEDEEDLRSSEWTNDFKNLTLKHEIFKDIKLTPKEDCDD
LAQVIATANEEDEPEDEEPEEYDEDDYDDIGDDYDTYEEAYTGFNKLHVQ
PQLTNASGGGSGGGAGGASGGSQRVSSYQPNEKLLRRYSARINVEKYDPT
TNMSAQAANRLVNFDRRDRTQVRDKHDRATAEQVMDPRTRMILFKLLNRG
MIQEINGCISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFKDRDKYVSG
EFRFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLV
MRFCGRDGWPAPKLKDVELSTSKARELYRDCVVIMWRIYNQCRLVHADLS
EFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVATM
TVKELFDFITDQTITTENMEECLERISERIKDRDFDAISAQEKIDEAVWQ
NTYIPKRLDEVRHFERDVAKAKQGVQQNLIYGKITGLTSDLDVQQKPDVL
QSSTAKEDDGSEAQTSGSEDEDNSQDNDNDEDAKKFKNSARPREESPESK
KARKKAVKDAKAEQRKVKVKKHVKKRKEKMGSMKK*

LD24837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24528-PA 583 GF24528-PA 1..582 1..584 2385 83.3 Plus
Dana\GF23540-PA 612 GF23540-PA 239..533 153..429 549 42.1 Plus
Dana\GF17559-PA 524 GF17559-PA 83..276 191..395 191 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13901-PA 580 GG13901-PA 1..580 1..585 2706 94.7 Plus
Dere\GG25025-PA 603 GG25025-PA 228..504 153..410 547 43.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16627-PA 574 GH16627-PA 3..574 4..585 2379 79.8 Plus
Dgri\GH13229-PA 599 GH13229-PA 235..529 153..429 569 43.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
RIOK1-PB 585 CG11660-PB 1..585 1..585 3063 100 Plus
RIOK1-PA 585 CG11660-PA 1..585 1..585 3063 100 Plus
CG3008-PA 603 CG3008-PA 148..602 66..538 575 31.9 Plus
RIOK2-PA 538 CG11859-PA 83..276 191..395 166 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11584-PA 578 GI11584-PA 3..578 4..585 2349 80.2 Plus
Dmoj\GI18109-PA 619 GI18109-PA 246..540 153..429 558 42.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16346-PA 556 GL16346-PA 1..556 1..585 2306 78.9 Plus
Dper\GL18640-PA 618 GL18640-PA 246..600 153..525 511 36.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11126-PA 573 GA11126-PA 1..573 1..585 2300 79 Plus
Dpse\GA15630-PA 618 GA15630-PA 246..600 153..525 511 36.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24726-PA 586 GM24726-PA 1..586 1..585 3092 98 Plus
Dsec\GM18498-PA 603 GM18498-PA 228..504 153..410 543 43.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12787-PA 585 GD12787-PA 1..585 1..585 3065 97.4 Plus
Dsim\GD23306-PA 583 GD23306-PA 154..484 72..410 433 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11263-PA 586 GJ11263-PA 3..586 4..585 2288 78.8 Plus
Dvir\GJ16296-PA 615 GJ16296-PA 239..533 153..429 561 42.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10469-PA 580 GK10469-PA 3..580 4..584 2198 76.7 Plus
Dwil\GK24469-PA 589 GK24469-PA 156..530 66..429 617 36.4 Plus
Dwil\GK12926-PA 545 GK12926-PA 83..276 191..395 187 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20191-PA 584 GE20191-PA 1..584 1..585 3055 96.2 Plus
Dyak\GE18314-PA 603 GE18314-PA 154..504 72..410 515 36.7 Plus

LD24837.hyp Sequence

Translation from 290 to 2047

> LD24837.hyp
MNNDSHKYSDAEEDEEDLRSSEWTNDFKNLTLKHEIFKDIKLTPKEDCDD
LAQVIATANEEDEPEDEEPEEYDEDDYDDIGDDYDTYEEAYTGFNKLHVQ
PQLTNASGGGSGGGAGGASGGSQRVSSYQPNEKLLRRYSARINVEKYDPT
TNMSAQAANRLVNFDRRDRTQVRDKHDRATAEQVMDPRTRMILFKLLNRG
MIQEINGCISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFKDRDKYVSG
EFRFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLV
MRFCGRDGWPAPKLKDVELSTSKARELYRDCVVIMWRIYNQCRLVHADLS
EFNILLQDGQLVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVATM
TVKELFDFITDQTITTENMEECLERISERIKDRDFDAISAQEKIDEAVWQ
NTYIPKRLDEVRHFERDVAKAKQGVQQNLIYGKITGLTSDLDVQQKPDVL
QSSTAKEDDGSEAQTSGSEDEDNSQDNDNDEDAKKFKNSARPREESPESK
KARKKAVKDAKAEQRKVKVKKHVKKRKEKMGSMKK*

LD24837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
RIOK1-PB 585 CG11660-PB 1..585 1..585 3063 100 Plus
RIOK1-PA 585 CG11660-PA 1..585 1..585 3063 100 Plus
CG3008-PA 603 CG3008-PA 148..602 66..538 575 31.9 Plus
RIOK2-PA 538 CG11859-PA 83..276 191..395 166 24.3 Plus