Clone LD24839 Report

Search the DGRC for LD24839

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:39
Vector:pOT2
Associated Gene/TranscriptCG15141-RA
Protein status:LD24839.pep: gold
Preliminary Size:2200
Sequenced Size:1688

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15141 2001-01-01 Release 2 assignment
CG15141 2001-07-04 Blastp of sequenced clone
CG15141 2003-01-01 Sim4 clustering to Release 3
CG15141 2008-04-29 Release 5.5 accounting
CG15141 2008-08-15 Release 5.9 accounting
CG15141 2008-12-18 5.12 accounting

Clone Sequence Records

LD24839.complete Sequence

1688 bp (1688 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051712

> LD24839.complete
CATCCCTAGGTTTCGGTGGTTGAATTATTTGCAAATTTTTATCCAATCGC
GCCAAACGCTGCGCATTCCGCCACTTTCGAGAAACTGACACGAAGCCAAG
CTAAAAATACATTATTAAACAGCTGACATGAGCGAGTCGAATGCCACAGA
TGGTGTCCACGAGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTA
CGATGCTAGATGTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCC
GCAGTGCTGGGCGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCC
CATCGGCCGACAGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGC
GCGAGGATCTGGACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGC
TGTCACGAGCACCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCG
CTGCGATTGTCCCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAG
TCGAGGGCGTTCAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTC
CAGGGGCTGTACTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCAC
CGTTGAGGAGGTTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACT
TGCCGCACATGAAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGC
AGCGAAATGATTTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGA
CTACACTGGATTAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACA
AGCCGGAGGCTGACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATC
TGCGATATCATGAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGA
ACCCAGCCAGAAGCGCGCCAAACTGGACGATTGTCGTCGGCCCAAACCAA
CCAAGGAGCATCAGGGAGCTGCTTTCTGGACAAATGACTGGCGAAAATCA
CTCTGTCAGTGCTCCGAATGCCTGTCGCTTTACAAGGAACTTGCCGTGGA
GTTTCTGCTGGATGTCGAGGATTCGGCTAAGACGTACGAGGAGCGCGGCA
TGAAGCGGGCTGAAGAGAATTCCAGTTATGAGCAAGGAATCCGGGCACTG
GCCTCCATTGACCGGACACAGCAAATCGATGCGATTACCGAATACAATCG
CATGAAGGACAAGCTAAAGGAATACCTGCAGGCATTCGCCGCCAGCAAGA
AGGTAGTGACCGAGGAGGATATCAATCGGTTCTTTGCCGGCATGCGCAAT
GAGAACAATGCCAACCTGGGTCAGCCCTATTTCTGTCGCTAAACAGTTAG
CACTCTATATTACTCTAGTATTACCCACATTCCCCCATGAAAGCGAAACA
TACATACATACATCATGTAAATTCTAAAGTTATATTTTATTTAAACAATA
ATCATTTTCAATTCACTTTTGTCAATAACGAAAAGTCGTAACAAGGCATC
GGGCAATGAGATTCGCATTTCCCTCATTAAATTTATGTACATTGCGGTAA
AATAGAATTATATAAGACAGGTTTTGTGTTGAAGTTCATTTTGGATTGAG
ACCTTTTTACATGTAGCTCTAATTGGTTAATTTCCGATATATTTTATGAA
ATATATGTACACTAGTATTTAAAAAAAAAAAAAAAAAA

LD24839.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-RA 1752 CG15141-RA 79..1749 1..1671 8355 100 Plus
Dif.b 2312 Dif.b 2060..2312 1671..1419 1265 100 Minus
Dif-RB 2483 Dif-RB 2231..2483 1671..1419 1265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17409307..17410272 1..966 4830 100 Plus
chr2L 23010047 chr2L 17411443..17412152 961..1670 3520 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17410654..17411619 1..966 4830 100 Plus
2L 23513712 2L 17412790..17413500 961..1671 3540 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17410654..17411619 1..966 4830 100 Plus
2L 23513712 2L 17412790..17413500 961..1671 3540 99.8 Plus
Blast to na_te.dros performed 2019-03-16 10:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 4857..4906 1154..1202 121 74 Plus
Dbuz\Galileo 2304 Dbuz\Galileo GALILEO 2304bp 1118..1192 1397..1468 115 67.1 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 4744..4805 1476..1415 112 64.5 Minus

LD24839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:41:27 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17409307..17410271 1..965 100 -> Plus
chr2L 17411448..17412152 966..1670 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:35 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 128..1342 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:42 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 128..1342 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:04:56 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 128..1342 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:18 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 128..1342 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:36 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 128..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:38 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1667 4..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:42 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1667 4..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:04:56 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 14..1683 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:19 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1667 4..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:36 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 14..1683 1..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:27 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17410654..17411618 1..965 100 -> Plus
2L 17412795..17413499 966..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:27 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17410654..17411618 1..965 100 -> Plus
2L 17412795..17413499 966..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:41:27 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17410654..17411618 1..965 100 -> Plus
2L 17412795..17413499 966..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:04:56 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17410654..17411618 1..965 100 -> Plus
arm_2L 17412795..17413499 966..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:59 Download gff for LD24839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17410654..17411618 1..965 100 -> Plus
2L 17412795..17413499 966..1670 100   Plus

LD24839.pep Sequence

Translation from 127 to 1341

> LD24839.pep
MSESNATDGVHEVEESNPLEQSTITMLDVLEQEKELEDEYAAVLGASDEK
SCTYAKGPIGRQALYSCLTCCPEAREDLDKAAGVCLACSYRCHEHHELVE
LYTKRNFRCDCPTQRLGKCSLNPQVEGVQPRNVGNLYNQNFQGLYCKCKR
PYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICDGCM
DAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRSICDIMKVPEG
ESQPDEGEPSQKRAKLDDCRRPKPTKEHQGAAFWTNDWRKSLCQCSECLS
LYKELAVEFLLDVEDSAKTYEERGMKRAEENSSYEQGIRALASIDRTQQI
DAITEYNRMKDKLKEYLQAFAASKKVVTEEDINRFFAGMRNENNANLGQP
YFCR*

LD24839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15106-PA 415 GF15106-PA 1..415 1..404 1879 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21086-PA 404 GG21086-PA 1..404 1..404 2077 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11702-PA 470 GH11702-PA 6..282 15..278 810 57.3 Plus
Dgri\GH11702-PA 470 GH11702-PA 310..470 246..404 587 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-PA 404 CG15141-PA 1..404 1..404 2186 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16049-PA 396 GI16049-PA 1..396 1..404 1398 67.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19364-PA 397 GL19364-PA 1..397 1..404 1568 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13523-PA 397 GA13523-PA 1..397 1..404 1568 73.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17237-PA 404 GM17237-PA 1..404 1..404 2114 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24108-PA 404 GD24108-PA 1..404 1..404 2140 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16189-PA 395 GJ16189-PA 1..395 1..404 1515 71.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24177-PA 403 GK24177-PA 1..403 1..404 1597 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12791-PA 404 GE12791-PA 1..404 1..404 2051 93.8 Plus

LD24839.hyp Sequence

Translation from 127 to 1341

> LD24839.hyp
MSESNATDGVHEVEESNPLEQSTITMLDVLEQEKELEDEYAAVLGASDEK
SCTYAKGPIGRQALYSCLTCCPEAREDLDKAAGVCLACSYRCHEHHELVE
LYTKRNFRCDCPTQRLGKCSLNPQVEGVQPRNVGNLYNQNFQGLYCKCKR
PYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICDGCM
DAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRSICDIMKVPEG
ESQPDEGEPSQKRAKLDDCRRPKPTKEHQGAAFWTNDWRKSLCQCSECLS
LYKELAVEFLLDVEDSAKTYEERGMKRAEENSSYEQGIRALASIDRTQQI
DAITEYNRMKDKLKEYLQAFAASKKVVTEEDINRFFAGMRNENNANLGQP
YFCR*

LD24839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-PA 404 CG15141-PA 1..404 1..404 2186 100 Plus