Clone LD24842 Report

Search the DGRC for LD24842

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:42
Vector:pOT2
Associated Gene/Transcriptfws-RA
Protein status:LD24842.pep: gold
Sequenced Size:2451

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6549 2002-12-10 Blastp of sequenced clone
CG6549 2003-01-01 Sim4 clustering to Release 3
fws 2008-04-29 Release 5.5 accounting
fws 2008-08-15 Release 5.9 accounting
fws 2008-12-18 5.12 accounting

Clone Sequence Records

LD24842.complete Sequence

2451 bp (2451 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003257

> LD24842.complete
TAAAATTGCTGCAAGTAATGGAAATAAAAGTGTAATACCAGCTTATAATT
CGTATTACCATAGATTAAAACCTTCTGCATCATGGTGACTGGAGACCCGG
TAGCGACAAAGACCCCAAACGCAGCGGATTCGGATGATAATGACTTTACC
GCATCCATGTCGCACCTGACCATTGGCCAGCAAATCCAGGAGCTGTCCAA
GCAACTGCAGAACACGAAGGAGGAGCTGCACCAGCAGGTGCGCGACAAGC
ACGGAGCTCTACTGCAGCAGGCCACCCACGCTGGGCGCTTCGATGCGGCT
TTAAACGCGCTCGCCGAGGATGTGCAGCGGGTCAGGGAAACTGGGCACCG
GCTGAAGAACCAGGTGGACACGCAGTACCAGCAGGTGGAGAACCAAACGC
AAGTGCTAGGGCGTCTGCACGATGTCAGTCACCTACTCCGCTCGGCTGGA
ACATTGCTGAGCCTCACGGCCAAACTAAAAGCGACCAAGGATGTCCTACG
CCTGGCCGAAATCCACTTTGAGTTGGGCCAACTCATCGAAGATAAGGAGC
TAAAGGACATTGATTTTATCCAGCAGGAGCGAGCTTATGTGATCAGCTCT
GCTCAGAAGATAAGGAACCTCACGCAGATGCAGTTGGTCACTGGGCTCCA
GGAGCGCAATGAAAACCAAGTGGTTAATGCCTTGAAGATCTTTATGAATT
TCAATACGCTGGAAAAATCGCTGGATAACCTATTGGCCACCTTTATTGCC
GACATGGAGCAATCTCTGAAAGAGTGCTTTGCTGGCAACGATATATCTGT
GCTGAACAAGTCCCCGACGCACAATGTGAGCAAACCTGCTCCCTCGAGGG
GACCAGGAAAAACTCCCCAGTTGACAACCACTCAAAACTTCCGTGCCAAG
TTCTGGAAGTCTCTTCATTGGCTGCTCTATGATGAACTTTTTGAGACTTG
CACGCAAATCAAGCTGCTGAAAACGGCTCTCGAGCAGATCAACCAGTTTG
GCTATACATCAGAATCATCGGATCAGTGCATTCCGCAGCGTTTTTGGCAG
CAGGTGCAGCAGCTCCTGCGAAAATCCTTTGACGAATGCCCCCAGCATGT
TACGCAGACCCTTCAGGAGGGGCTCTCAAAGCTCCTGACCTCCGCTCGTG
GCTTGGAGCAGCGTCTGCATGGCGAGTTTCAGTTTGACAACGAACTATTT
GCTCCCCTGGAAGTGGGTTACGTTAGCAAGTGTGCTGCCAACTTTAAGGC
ATGTCTGGCGGGAGTCGATTTGCCCGGCAACGAAACGGTGGACAACTTTA
TTCGTGTGGCATCAACGGAGCTCAGTGCTGCTTTGATCGATTCCCGTCTC
ACGAATGCCATAGCAAATGTATTTGCGGCCTGTGGAAAAGAGTTGTGCAC
AAAACTAGAGGCTCAAATCAAGCTGGGAGCTGATTCCAAGCAGGTCGTGG
ATCTGCCCAATCTGCAGCAGCAGCAAAACACCCAGCTGGCGAATGTTCTG
TTCTACTATAAGGATTCAGTGCGTCGCATGCTCAGTGATCTTCATGTGCA
CTTTGAAAAGACACCGGGAACAGCTAGGGAGATTATATCCCGATCCTTGG
AACAGGCTGATTTACTGATCGGCACCATTCTACAGCAGATAATGGAGTCG
ATTATCACGACCATTAGCATCATTGTATTGAGTATGCACAGGGAGCCGGG
ATTGAATTCGGAGAGGATGTCTACCACAGGTCCGTCGATGTACATGAAGG
AACTGCAGGAGTTCGTCAACCGATCCTGGTCGCATCACATCGCCCTGTTC
GATGACAAGCAGATGACGAAAAAGTGCGGACACGAGTTGGCCAAACGTTG
CATTGAGCTCTTCCTGCACAATGTGTGCATTCTGCGACCTTTAAGCTCCT
GCGGAAGGCAGCGTTTGAAGCAAGACTGTCAACACATGGAACAGGCGTTG
AAACCTCTTTGCCCAAATCTCGCCGAGCTGGGAAAGCCGTCGCGTCTGCT
AAGAGCCATGTCCTTGCTGATCGTCCAAACGGCCGAGGAGCTGGTCAAGC
AGACAATCGGCGAGGACTCTCTAGTGCCCAGTTACATAGTGCTGTTGCTG
CTCTTCGGACACGCTGGAGCAGATCTGCAGTCGCCACACACGACGGCCAA
CTGGTCCAATGAGCGGCTGATCGAATGGCTGGATGGGCACACGGCTGAAC
GGGAGAAACTAGAGCTGATCTCGGGGGCACTGCAACGGTATCGGGACAAT
GCCAGGCGAAAGAACATTCAGCAGTACGACGAAGTTTACCCCATGATGGT
AGATTATTTTGAACAGGCCTTAAAGGCACTTCCATAAATGTCTAATGTAT
TATGTATCTAGAACTATGTATGTATGTATGTAAGAGCACGAATATGTTTG
GAATAAACATATGCATGGCATCCTTCTATTAAAAAAAAAAAAAAAAAAAA
A

LD24842.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
fws-RA 2606 fws-RA 65..2497 1..2433 12165 100 Plus
fws.c 2518 fws.c 128..2501 60..2433 11855 99.9 Plus
fws.a 2561 fws.a 96..2465 64..2433 11850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17477778..17478851 1759..686 5370 100 Minus
chr2L 23010047 chr2L 17478903..17479589 687..1 3435 100 Minus
chr2L 23010047 chr2L 17477049..17477722 2430..1757 3370 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17479171..17480244 1759..686 5370 100 Minus
2L 23513712 2L 17480296..17480982 687..1 3435 100 Minus
2L 23513712 2L 17478439..17479115 2433..1757 3385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17479171..17480244 1759..686 5370 100 Minus
2L 23513712 2L 17480296..17480982 687..1 3435 100 Minus
2L 23513712 2L 17478439..17479115 2433..1757 3385 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:29:30 has no hits.

LD24842.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:21 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17477049..17477720 1759..2430 100 <- Minus
chr2L 17477779..17478849 688..1758 100 <- Minus
chr2L 17478903..17479589 1..687 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:37 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 1..2256 82..2337 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:54 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 1..2256 82..2337 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:24:09 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RC 1..2256 82..2337 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:19 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 1..2256 82..2337 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:32 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RD 1..2256 82..2337 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:19:51 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 31..2460 1..2430 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:54 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 31..2460 1..2430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:24:09 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 48..2477 1..2430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:19 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 31..2460 1..2430 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:32 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
fws-RA 48..2477 1..2430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:21 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17478442..17479113 1759..2430 100 <- Minus
2L 17479172..17480242 688..1758 100 <- Minus
2L 17480296..17480982 1..687 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:21 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17478442..17479113 1759..2430 100 <- Minus
2L 17479172..17480242 688..1758 100 <- Minus
2L 17480296..17480982 1..687 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:21 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17478442..17479113 1759..2430 100 <- Minus
2L 17479172..17480242 688..1758 100 <- Minus
2L 17480296..17480982 1..687 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:24:09 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17478442..17479113 1759..2430 100 <- Minus
arm_2L 17479172..17480242 688..1758 100 <- Minus
arm_2L 17480296..17480982 1..687 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:18 Download gff for LD24842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17478442..17479113 1759..2430 100 <- Minus
2L 17479172..17480242 688..1758 100 <- Minus
2L 17480296..17480982 1..687 100   Minus

LD24842.hyp Sequence

Translation from 81 to 2336

> LD24842.hyp
MVTGDPVATKTPNAADSDDNDFTASMSHLTIGQQIQELSKQLQNTKEELH
QQVRDKHGALLQQATHAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQ
QVENQTQVLGRLHDVSHLLRSAGTLLSLTAKLKATKDVLRLAEIHFELGQ
LIEDKELKDIDFIQQERAYVISSAQKIRNLTQMQLVTGLQERNENQVVNA
LKIFMNFNTLEKSLDNLLATFIADMEQSLKECFAGNDISVLNKSPTHNVS
KPAPSRGPGKTPQLTTTQNFRAKFWKSLHWLLYDELFETCTQIKLLKTAL
EQINQFGYTSESSDQCIPQRFWQQVQQLLRKSFDECPQHVTQTLQEGLSK
LLTSARGLEQRLHGEFQFDNELFAPLEVGYVSKCAANFKACLAGVDLPGN
ETVDNFIRVASTELSAALIDSRLTNAIANVFAACGKELCTKLEAQIKLGA
DSKQVVDLPNLQQQQNTQLANVLFYYKDSVRRMLSDLHVHFEKTPGTARE
IISRSLEQADLLIGTILQQIMESIITTISIIVLSMHREPGLNSERMSTTG
PSMYMKELQEFVNRSWSHHIALFDDKQMTKKCGHELAKRCIELFLHNVCI
LRPLSSCGRQRLKQDCQHMEQALKPLCPNLAELGKPSRLLRAMSLLIVQT
AEELVKQTIGEDSLVPSYIVLLLLFGHAGADLQSPHTTANWSNERLIEWL
DGHTAEREKLELISGALQRYRDNARRKNIQQYDEVYPMMVDYFEQALKAL
P*

LD24842.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
fws-PI 751 CG6549-PI 1..751 1..751 3842 100 Plus
fws-PH 751 CG6549-PH 1..751 1..751 3842 100 Plus
fws-PD 751 CG6549-PD 1..751 1..751 3842 100 Plus
fws-PA 751 CG6549-PA 1..751 1..751 3842 100 Plus
fws-PC 751 CG6549-PC 1..751 1..751 3842 100 Plus

LD24842.pep Sequence

Translation from 81 to 2336

> LD24842.pep
MVTGDPVATKTPNAADSDDNDFTASMSHLTIGQQIQELSKQLQNTKEELH
QQVRDKHGALLQQATHAGRFDAALNALAEDVQRVRETGHRLKNQVDTQYQ
QVENQTQVLGRLHDVSHLLRSAGTLLSLTAKLKATKDVLRLAEIHFELGQ
LIEDKELKDIDFIQQERAYVISSAQKIRNLTQMQLVTGLQERNENQVVNA
LKIFMNFNTLEKSLDNLLATFIADMEQSLKECFAGNDISVLNKSPTHNVS
KPAPSRGPGKTPQLTTTQNFRAKFWKSLHWLLYDELFETCTQIKLLKTAL
EQINQFGYTSESSDQCIPQRFWQQVQQLLRKSFDECPQHVTQTLQEGLSK
LLTSARGLEQRLHGEFQFDNELFAPLEVGYVSKCAANFKACLAGVDLPGN
ETVDNFIRVASTELSAALIDSRLTNAIANVFAACGKELCTKLEAQIKLGA
DSKQVVDLPNLQQQQNTQLANVLFYYKDSVRRMLSDLHVHFEKTPGTARE
IISRSLEQADLLIGTILQQIMESIITTISIIVLSMHREPGLNSERMSTTG
PSMYMKELQEFVNRSWSHHIALFDDKQMTKKCGHELAKRCIELFLHNVCI
LRPLSSCGRQRLKQDCQHMEQALKPLCPNLAELGKPSRLLRAMSLLIVQT
AEELVKQTIGEDSLVPSYIVLLLLFGHAGADLQSPHTTANWSNERLIEWL
DGHTAEREKLELISGALQRYRDNARRKNIQQYDEVYPMMVDYFEQALKAL
P*

LD24842.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15100-PA 751 GF15100-PA 1..751 1..751 3630 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21741-PA 751 GG21741-PA 1..751 1..751 3942 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10156-PA 763 GH10156-PA 9..762 6..750 3368 86.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
fws-PI 751 CG6549-PI 1..751 1..751 3842 100 Plus
fws-PH 751 CG6549-PH 1..751 1..751 3842 100 Plus
fws-PD 751 CG6549-PD 1..751 1..751 3842 100 Plus
fws-PA 751 CG6549-PA 1..751 1..751 3842 100 Plus
fws-PC 751 CG6549-PC 1..751 1..751 3842 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22420-PA 759 GI22420-PA 21..757 22..750 3348 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15955-PA 755 GL15955-PA 1..755 1..751 3603 90.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19678-PA 755 GA19678-PA 1..755 1..751 3586 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17124-PA 751 GM17124-PA 1..751 1..751 3986 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21865-PA 751 GD21865-PA 1..751 1..751 4000 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20316-PA 762 GJ20316-PA 22..761 19..750 3368 88.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24828-PA 756 GK24828-PA 1..755 1..750 3356 85.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13130-PA 751 GE13130-PA 1..751 1..751 3897 96.5 Plus