Clone LD24865 Report

Search the DGRC for LD24865

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:65
Vector:pOT2
Associated Gene/TranscriptCG12034-RA
Protein status:LD24865.pep: gold
Preliminary Size:2298
Sequenced Size:1673

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12034 2001-01-01 Release 2 assignment
CG12034 2001-07-04 Blastp of sequenced clone
CG12034 2003-01-01 Sim4 clustering to Release 3
CG12034 2008-04-29 Release 5.5 accounting
CG12034 2008-08-15 Release 5.9 accounting
CG12034 2008-12-18 5.12 accounting

Clone Sequence Records

LD24865.complete Sequence

1673 bp (1673 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051714

> LD24865.complete
CACACTGTGGCTTTATATCTTTTAAAAATAACAAAATCAAAAAGTTATCT
TATCGCTGCTCCCGCGCCCGTTATTCCATTGTAAGCATGCGAACGTGAAA
ATTGGCCAAAGAAGTCGCTATGTTGCTGCTGGAGCTGAACATTCTGACCC
TGAATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATC
GATGCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCT
GCAGGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGG
AGGCGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCC
GGTCTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGC
GTGGTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCG
GCGGCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTG
CACCTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGA
GTACAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTG
AAGCCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAAT
GCCCAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGAT
GCTCGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACA
ACTCATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGT
ATCGATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGC
CGAATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCT
TCTCCGACCACGAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAA
CCTAGAAGTGAGGAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGA
GGATGGTGAAACCTGTTCCGTGAGGGAAGTAGGAGCAGGGGATGCTTTGA
CAGGAGAGGACGATCAGTCATCACAACACCAGCCGGAGATCCAATGCAAT
GGAAGCTCCACTTCCATTCAATCCATGCCCGCCGCTAGAACTGCTGCCCT
TCTTGAAGCTCTGGCGCTGTGCGATGCTTCCCTGCTGCAGTTAAACACTG
ATCGAATACTGTACTACAGCGCCGCCACCTTCCTGTTTGTCCTCTTGGTC
CTTCTGGTGGAGTTCACCGCCCCCGTGGGCATGCGCACTATCTTTCTGCT
GCTCAAGTTCATCGTGTTTGGCGTGATCCTGTTCTGCGTCTTCATGGCCT
CCATCTGGAACTATATGGAACGAAATGGGGTCCTGCAGGGCAAGAAGTCG
ATGGAGGTGATGCTGCACCACGCCCAGAAGTACGAGTACTTCTACTGAGG
CTGTGTATAGCAGCCAAGCTCAATGCGCATTTAAAATCCACGTGTAGCGT
ACTATAAGCAGCGATATATGTTTGACTAGAGTTATAGCGCTCTTACTTGA
TCTTTTTATTCGTGTAACCGTCAATGCAATTCCATGGTCTCTTTCTGTGT
AACGTCATCCATATCCCAGGAATAATAGTTCAATAAAAGTGAGAATCATT
TAGGCAAAAAAAAAAAAAAAAAA

LD24865.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12034-RA 1761 CG12034-RA 94..1755 1..1662 8295 99.9 Plus
RpL28-RA 960 RpL28-RA 853..960 1662..1555 525 99 Minus
RpL28-RB 973 RpL28-RB 866..973 1662..1555 525 99 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3218832..3220327 160..1655 7450 99.9 Plus
chr3L 24539361 chr3L 3218587..3218747 1..161 805 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3219430..3220932 160..1662 7500 99.9 Plus
3L 28110227 3L 3219185..3219345 1..161 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3219430..3220932 160..1662 7500 99.9 Plus
3L 28103327 3L 3219185..3219345 1..161 805 100 Plus
Blast to na_te.dros performed 2019-03-15 13:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3562..3664 1395..1291 133 60 Minus

LD24865.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:36:46 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3218587..3218746 1..160 100 -> Plus
chr3L 3218833..3220327 161..1655 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:38 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 1..1329 120..1448 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:29 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 1..1329 120..1448 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:07 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 1..1329 120..1448 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:00 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 1..1329 120..1448 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:34:56 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 1..1329 120..1448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:18 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 62..1716 1..1655 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:29 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 62..1716 1..1655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:07 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 30..1684 1..1655 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:00 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 62..1716 1..1655 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:34:56 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12034-RA 30..1684 1..1655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3219185..3219344 1..160 100 -> Plus
3L 3219431..3220925 161..1655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3219185..3219344 1..160 100 -> Plus
3L 3219431..3220925 161..1655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3219185..3219344 1..160 100 -> Plus
3L 3219431..3220925 161..1655 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:07 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3219185..3219344 1..160 100 -> Plus
arm_3L 3219431..3220925 161..1655 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:45 Download gff for LD24865.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3219185..3219344 1..160 100 -> Plus
3L 3219431..3220925 161..1655 100   Plus

LD24865.hyp Sequence

Translation from 119 to 1447

> LD24865.hyp
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFY*

LD24865.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12034-PA 442 CG12034-PA 1..442 1..442 2306 100 Plus

LD24865.pep Sequence

Translation from 119 to 1447

> LD24865.pep
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFY*

LD24865.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12034-PA 442 CG12034-PA 1..442 1..442 2306 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11353-PA 453 GA11353-PA 12..453 12..442 1806 81 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13741-PA 175 GD13741-PA 1..175 268..442 916 98.3 Plus