Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD24865.complete Sequence
1673 bp (1673 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051714
> LD24865.complete
CACACTGTGGCTTTATATCTTTTAAAAATAACAAAATCAAAAAGTTATCT
TATCGCTGCTCCCGCGCCCGTTATTCCATTGTAAGCATGCGAACGTGAAA
ATTGGCCAAAGAAGTCGCTATGTTGCTGCTGGAGCTGAACATTCTGACCC
TGAATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATC
GATGCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCT
GCAGGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGG
AGGCGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCC
GGTCTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGC
GTGGTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCG
GCGGCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTG
CACCTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGA
GTACAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTG
AAGCCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAAT
GCCCAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGAT
GCTCGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACA
ACTCATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGT
ATCGATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGC
CGAATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCT
TCTCCGACCACGAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAA
CCTAGAAGTGAGGAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGA
GGATGGTGAAACCTGTTCCGTGAGGGAAGTAGGAGCAGGGGATGCTTTGA
CAGGAGAGGACGATCAGTCATCACAACACCAGCCGGAGATCCAATGCAAT
GGAAGCTCCACTTCCATTCAATCCATGCCCGCCGCTAGAACTGCTGCCCT
TCTTGAAGCTCTGGCGCTGTGCGATGCTTCCCTGCTGCAGTTAAACACTG
ATCGAATACTGTACTACAGCGCCGCCACCTTCCTGTTTGTCCTCTTGGTC
CTTCTGGTGGAGTTCACCGCCCCCGTGGGCATGCGCACTATCTTTCTGCT
GCTCAAGTTCATCGTGTTTGGCGTGATCCTGTTCTGCGTCTTCATGGCCT
CCATCTGGAACTATATGGAACGAAATGGGGTCCTGCAGGGCAAGAAGTCG
ATGGAGGTGATGCTGCACCACGCCCAGAAGTACGAGTACTTCTACTGAGG
CTGTGTATAGCAGCCAAGCTCAATGCGCATTTAAAATCCACGTGTAGCGT
ACTATAAGCAGCGATATATGTTTGACTAGAGTTATAGCGCTCTTACTTGA
TCTTTTTATTCGTGTAACCGTCAATGCAATTCCATGGTCTCTTTCTGTGT
AACGTCATCCATATCCCAGGAATAATAGTTCAATAAAAGTGAGAATCATT
TAGGCAAAAAAAAAAAAAAAAAA
LD24865.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12034-RA | 1761 | CG12034-RA | 94..1755 | 1..1662 | 8295 | 99.9 | Plus |
RpL28-RA | 960 | RpL28-RA | 853..960 | 1662..1555 | 525 | 99 | Minus |
RpL28-RB | 973 | RpL28-RB | 866..973 | 1662..1555 | 525 | 99 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 3218832..3220327 | 160..1655 | 7450 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 3218587..3218747 | 1..161 | 805 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3219430..3220932 | 160..1662 | 7500 | 99.9 | Plus |
3L | 28110227 | 3L | 3219185..3219345 | 1..161 | 805 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 3219430..3220932 | 160..1662 | 7500 | 99.9 | Plus |
3L | 28103327 | 3L | 3219185..3219345 | 1..161 | 805 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 13:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3562..3664 | 1395..1291 | 133 | 60 | Minus |
LD24865.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:36:46 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 3218587..3218746 | 1..160 | 100 | -> | Plus |
chr3L | 3218833..3220327 | 161..1655 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:38 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 1..1329 | 120..1448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:29 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 1..1329 | 120..1448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:07 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 1..1329 | 120..1448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:00 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 1..1329 | 120..1448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:34:56 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 1..1329 | 120..1448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:18 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 62..1716 | 1..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:29 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 62..1716 | 1..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:07 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 30..1684 | 1..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:00 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 62..1716 | 1..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:34:56 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12034-RA | 30..1684 | 1..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3219185..3219344 | 1..160 | 100 | -> | Plus |
3L | 3219431..3220925 | 161..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3219185..3219344 | 1..160 | 100 | -> | Plus |
3L | 3219431..3220925 | 161..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:46 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3219185..3219344 | 1..160 | 100 | -> | Plus |
3L | 3219431..3220925 | 161..1655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:07 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3219185..3219344 | 1..160 | 100 | -> | Plus |
arm_3L | 3219431..3220925 | 161..1655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:45 Download gff for
LD24865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3219185..3219344 | 1..160 | 100 | -> | Plus |
3L | 3219431..3220925 | 161..1655 | 100 | | Plus |
LD24865.hyp Sequence
Translation from 119 to 1447
> LD24865.hyp
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFY*
LD24865.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12034-PA | 442 | CG12034-PA | 1..442 | 1..442 | 2306 | 100 | Plus |
LD24865.pep Sequence
Translation from 119 to 1447
> LD24865.pep
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFY*
LD24865.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12034-PA | 442 | CG12034-PA | 1..442 | 1..442 | 2306 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA11353-PA | 453 | GA11353-PA | 12..453 | 12..442 | 1806 | 81 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD13741-PA | 175 | GD13741-PA | 1..175 | 268..442 | 916 | 98.3 | Plus |