Clone LD24870 Report

Search the DGRC for LD24870

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:70
Vector:pOT2
Associated Gene/TranscriptCG7872-RA
Protein status:LD24870.pep: gold
Preliminary Size:1213
Sequenced Size:1612

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7872 2001-09-19 Blastp of sequenced clone
CG7872 2003-01-01 Sim4 clustering to Release 3
CG7872 2008-04-29 Release 5.5 accounting
CG7872 2008-08-15 Release 5.9 accounting
CG7872 2008-12-18 5.12 accounting

Clone Sequence Records

LD24870.complete Sequence

1612 bp (1612 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058556

> LD24870.complete
CCGAGCAGACGGACGAGCAGCGCCAGCGCGACCGCCACTGCCACCAGTTG
CTGCGGACCAATCCAAGTCACAACCAATCCGCTCCGATCCGATCCCAGCC
AACGAGTGCCAGCTGTGCGCCCCAGCTGCAGCTACACGTGTCCCCAGGGT
GAAAGCGCTATCCAAGATGCGGACGCACGGACTACGGTTGGTGCTCTTGG
CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC
AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC
GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC
TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG
GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA
CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT
ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG
GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG
CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC
AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG
GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT
CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA
AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC
ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC
GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC
GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCAGGAGGACAAGCTG
ATCGAGGAGTACCTGCATCTGAAGCTGTGGAAGCGCGAGAACTTCGTCGC
CTGGAAGGCAGAACAGGAAGAGGAGATGAAAAAGAAGCTGGCGGAGAATC
CACGATACAAGGCGTACAGGCGATACATGAAGAACCACGGACCCGGCCGC
ATCACCTTTGAGGATTAGCCGCTGCTCTGCGATGTTCAAGTTTCATTGTT
CCATCTAAAAGTCTGTTGTGTGCGTGTTGTAAAACCGATCCCAAATTCCT
CGCCCTCGGCATCCCCATACCGTCTAAATTTTGATACATTTATATATATA
TATTTAGAAATTTTTTGTACACCAACTATATCAATATGAATTATGTTAAT
GTCCCGGTGTTGTCCGCCAAAGGGCGAAACGTTGACCCCGCCGGAGCGAT
CCGCCAAAACCGGTTCAAGAACGTGGCCACGTTCGGTACGCGTCGGCACA
GTGTCCACTGGCTGCCGTGAACGAACCATCCTAGAACAATTATACCCCTA
CCTGGCTGGTCACAAAAAAAGCACGCCACATTCGCGTGTTTCCTAACTAA
CTTGACTAAACCGATTACTGTAATAAACTAGATAAAATTCAAAAAAAAAA
AAAAAAAAAAAA

LD24870.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7872-RA 1774 CG7872-RA 179..1771 1..1593 7965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15468155..15469744 1..1590 7935 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15578268..15579860 1..1593 7965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15586366..15587958 1..1593 7965 100 Plus
Blast to na_te.dros performed 2019-03-16 02:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 4127..4188 973..1033 127 69.4 Plus

LD24870.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:17:51 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15468155..15469744 1..1590 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:39 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 1..1002 167..1168 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:08 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 1..1002 167..1168 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:30 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 1..1002 167..1168 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:43 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 1..1002 167..1168 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:03:24 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 1..1002 167..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:42 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 179..1768 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:08 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 179..1768 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:30 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 64..1653 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:43 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 179..1768 1..1590 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:03:24 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
CG7872-RA 64..1653 1..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:17:51 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
X 15578268..15579857 1..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:17:51 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
X 15578268..15579857 1..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:17:51 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
X 15578268..15579857 1..1590 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:30 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15472301..15473890 1..1590 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:33 Download gff for LD24870.complete
Subject Subject Range Query Range Percent Splice Strand
X 15586366..15587955 1..1590 100   Plus

LD24870.hyp Sequence

Translation from 0 to 1167

> LD24870.hyp
RADGRAAPARPPLPPVAADQSKSQPIRSDPIPANECQLCAPAAATRVPRV
KALSKMRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKS
EIGKAYRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDY
DYMLDNPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQR
YDSAIKYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERI
IRRVIEEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYT
VMKQPYGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVA
WKAEQEEEMKKKLAENPRYKAYRRYMKNHGPGRITFED*

LD24870.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7872-PA 333 CG7872-PA 1..333 56..388 1767 100 Plus

LD24870.pep Sequence

Translation from 166 to 1167

> LD24870.pep
MRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKSEIGKA
YRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDYDYMLD
NPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQRYDSAI
KYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERIIRRVI
EEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYTVMKQP
YGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVAWKAEQ
EEEMKKKLAENPRYKAYRRYMKNHGPGRITFED*

LD24870.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21912-PA 330 GF21912-PA 20..330 23..333 1404 93.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17889-PA 333 GG17889-PA 1..333 1..333 1744 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12872-PA 339 GH12872-PA 14..339 9..333 1344 82.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7872-PA 333 CG7872-PA 1..333 1..333 1767 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14972-PA 341 GI14972-PA 14..341 9..333 1355 83.2 Plus
Dmoj\GI14539-PA 347 GI14539-PA 6..65 33..96 148 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16552-PA 333 GL16552-PA 1..333 1..333 1387 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20648-PA 333 GA20648-PA 1..333 1..333 1387 87.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22555-PA 333 GM22555-PA 1..333 1..333 1769 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17221-PA 333 GD17221-PA 1..333 1..333 1762 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18933-PA 341 GJ18933-PA 14..341 9..333 1379 84.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19832-PA 336 GK19832-PA 10..336 8..333 1453 85.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17196-PA 333 GE17196-PA 1..333 1..333 1747 98.2 Plus