BDGP Sequence Production Resources |
Search the DGRC for LD24870
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 248 |
Well: | 70 |
Vector: | pOT2 |
Associated Gene/Transcript | CG7872-RA |
Protein status: | LD24870.pep: gold |
Preliminary Size: | 1213 |
Sequenced Size: | 1612 |
Gene | Date | Evidence |
---|---|---|
CG7872 | 2001-09-19 | Blastp of sequenced clone |
CG7872 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7872 | 2008-04-29 | Release 5.5 accounting |
CG7872 | 2008-08-15 | Release 5.9 accounting |
CG7872 | 2008-12-18 | 5.12 accounting |
1612 bp (1612 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058556
> LD24870.complete CCGAGCAGACGGACGAGCAGCGCCAGCGCGACCGCCACTGCCACCAGTTG CTGCGGACCAATCCAAGTCACAACCAATCCGCTCCGATCCGATCCCAGCC AACGAGTGCCAGCTGTGCGCCCCAGCTGCAGCTACACGTGTCCCCAGGGT GAAAGCGCTATCCAAGATGCGGACGCACGGACTACGGTTGGTGCTCTTGG CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCAGGAGGACAAGCTG ATCGAGGAGTACCTGCATCTGAAGCTGTGGAAGCGCGAGAACTTCGTCGC CTGGAAGGCAGAACAGGAAGAGGAGATGAAAAAGAAGCTGGCGGAGAATC CACGATACAAGGCGTACAGGCGATACATGAAGAACCACGGACCCGGCCGC ATCACCTTTGAGGATTAGCCGCTGCTCTGCGATGTTCAAGTTTCATTGTT CCATCTAAAAGTCTGTTGTGTGCGTGTTGTAAAACCGATCCCAAATTCCT CGCCCTCGGCATCCCCATACCGTCTAAATTTTGATACATTTATATATATA TATTTAGAAATTTTTTGTACACCAACTATATCAATATGAATTATGTTAAT GTCCCGGTGTTGTCCGCCAAAGGGCGAAACGTTGACCCCGCCGGAGCGAT CCGCCAAAACCGGTTCAAGAACGTGGCCACGTTCGGTACGCGTCGGCACA GTGTCCACTGGCTGCCGTGAACGAACCATCCTAGAACAATTATACCCCTA CCTGGCTGGTCACAAAAAAAGCACGCCACATTCGCGTGTTTCCTAACTAA CTTGACTAAACCGATTACTGTAATAAACTAGATAAAATTCAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7872-RA | 1774 | CG7872-RA | 179..1771 | 1..1593 | 7965 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15468155..15469744 | 1..1590 | 7935 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15578268..15579860 | 1..1593 | 7965 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15586366..15587958 | 1..1593 | 7965 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 973..1033 | 127 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15468155..15469744 | 1..1590 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 1..1002 | 167..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 1..1002 | 167..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 1..1002 | 167..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 1..1002 | 167..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 1..1002 | 167..1168 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 179..1768 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 179..1768 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 64..1653 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 179..1768 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7872-RA | 64..1653 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15578268..15579857 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15578268..15579857 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15578268..15579857 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15472301..15473890 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15586366..15587955 | 1..1590 | 100 | Plus |
Translation from 0 to 1167
> LD24870.hyp RADGRAAPARPPLPPVAADQSKSQPIRSDPIPANECQLCAPAAATRVPRV KALSKMRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKS EIGKAYRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDY DYMLDNPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQR YDSAIKYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERI IRRVIEEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYT VMKQPYGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVA WKAEQEEEMKKKLAENPRYKAYRRYMKNHGPGRITFED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7872-PA | 333 | CG7872-PA | 1..333 | 56..388 | 1767 | 100 | Plus |
Translation from 166 to 1167
> LD24870.pep MRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKSEIGKA YRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDYDYMLD NPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQRYDSAI KYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERIIRRVI EEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYTVMKQP YGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVAWKAEQ EEEMKKKLAENPRYKAYRRYMKNHGPGRITFED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21912-PA | 330 | GF21912-PA | 20..330 | 23..333 | 1404 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17889-PA | 333 | GG17889-PA | 1..333 | 1..333 | 1744 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12872-PA | 339 | GH12872-PA | 14..339 | 9..333 | 1344 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7872-PA | 333 | CG7872-PA | 1..333 | 1..333 | 1767 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14972-PA | 341 | GI14972-PA | 14..341 | 9..333 | 1355 | 83.2 | Plus |
Dmoj\GI14539-PA | 347 | GI14539-PA | 6..65 | 33..96 | 148 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16552-PA | 333 | GL16552-PA | 1..333 | 1..333 | 1387 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20648-PA | 333 | GA20648-PA | 1..333 | 1..333 | 1387 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22555-PA | 333 | GM22555-PA | 1..333 | 1..333 | 1769 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17221-PA | 333 | GD17221-PA | 1..333 | 1..333 | 1762 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18933-PA | 341 | GJ18933-PA | 14..341 | 9..333 | 1379 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19832-PA | 336 | GK19832-PA | 10..336 | 8..333 | 1453 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17196-PA | 333 | GE17196-PA | 1..333 | 1..333 | 1747 | 98.2 | Plus |