Clone LD24887 Report

Search the DGRC for LD24887

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:87
Vector:pOT2
Associated Gene/TranscriptLas-RC
Protein status:LD24887.pep: gold
Preliminary Size:1196
Sequenced Size:1378

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5231 2001-01-01 Release 2 assignment
CG5231 2001-09-19 Blastp of sequenced clone
Las 2008-04-29 Release 5.5 accounting
Las 2008-08-15 Release 5.9 accounting
Las 2008-12-18 5.12 accounting

Clone Sequence Records

LD24887.complete Sequence

1378 bp (1378 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058557

> LD24887.complete
AAATCGTTTATATTTTAATAATTGTAAAATAATTCATATGTATGTCATGT
TGCGAGCTTTAAAAACTCACGCGGAGGCCCCCATTGTAGTTGCCACCCGT
GCGGCATCAACGAATGCGGAGAAGCTTGAGGAGATTCGTGAACGTCTGGC
AAAGGGTCCGAATTTCCATGACTTTGTGCAGAATCCGGACAACACCAGAA
ACGAGTGGGAACAGTACGATGGAAAGCTACGCCGCGAAAAGGGCGAGGAG
CAGCGACTGCGATTGCCGCCTTGGTTAAAGACCACCATTCCCGTGGGCAA
AAACTACGCCAAAATCAAGGCCCAGATGCGCGAGCTCAAGCTGTCCACCG
TCTGCGAGGAGGCCCGGTGTCCCAACATCGGCGAGTGCTGGGGCGGCGGC
GAGCATGGCACCCAGACAGCCACGATTATGCTTATGGGCGACACTTGCAC
CAGAGGCTGTAGATTTTGTTCGGTGAAAACGGCACGCAAACCACCACCGC
TGGATGTAAACGAACCCGTGAACACAGCCACGGCAATTGCCTCCTGGGGA
TTGGATTACATTGTTCTGACCTCAGTTGATCGAGATGATTTGCCAGACGG
TGGCTCGGAGCACATTGCCGAAACTGTTCGCGAAATTAAGGCGCGCAACT
CAAACATCTTTGTGGAGTGCCTAGTACCTGATTTCCGAGGAAATCTGGAG
TGTGTGAAGACGATCGCCAACAGCGGGCTGGATGTTTATGCGCACAACAT
AGAGACGGTTGAGAAGCTCACTCCCTATGTGCGCGACCGGCGCGCCCACT
ACCGCCAGACCCTGCAAGTGCTAACCGAAGCGAAGAGATTCAACCCCAAT
CTCATCACCAAGAGTTCAATTATGCTGGGACTTGGCGAGACCGACGAGGA
GATCGAGAACACCTTGAAGGATCTGCGGGAGGCCGGCGTAGATTGCGTGA
CCCTGGGTCAGTACATGCAGCCCACGAATAAGCACCTCAAGGTCATCGAA
TACGTCACGCCCGAGAAGTTCAAGCACTGGGAAGAGCGCGGCAACGAACT
GGGTTTCCTGTACACAGCCAGTGGACCGCTGGTGCGCAGCTCCTACAAAG
CCGGCGAGTTCTTCATCACAAGTATATTGGAGAATCGCAAGAAGAGGCAA
AACGACACTGAAGTTCCCAAGAAGCAGTAAAATTTCTAAGCCTTTCCTAG
TCGATCATGGATAGCTTTAGTTTAGCCTTTTATTCGCTACACACGCGCAT
GTTGTGCAATGTATATATTAGACGACAAATTTACTGTTTTGAAATAAAAT
CGAATTGTTTTTAGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCAAAAAAAAAAAAAAAAAAAAAAAAAA

LD24887.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Las-RC 1411 Las-RC 87..1407 1..1321 6605 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20419608..20420284 1321..645 3370 99.9 Minus
chr3L 24539361 chr3L 20420824..20421156 430..98 1665 100 Minus
chr3L 24539361 chr3L 20420454..20420611 587..430 790 100 Minus
chr3L 24539361 chr3L 20421216..20421312 97..1 485 100 Minus
chr3L 24539361 chr3L 20420339..20420397 645..587 295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20430602..20431278 1321..645 3385 100 Minus
3L 28110227 3L 20431818..20432150 430..98 1665 100 Minus
3L 28110227 3L 20431448..20431605 587..430 790 100 Minus
3L 28110227 3L 20432210..20432306 97..1 485 100 Minus
3L 28110227 3L 20431333..20431391 645..587 295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20423702..20424378 1321..645 3385 100 Minus
3L 28103327 3L 20424918..20425250 430..98 1665 100 Minus
3L 28103327 3L 20424548..20424705 587..430 790 100 Minus
3L 28103327 3L 20425310..20425406 97..1 485 100 Minus
3L 28103327 3L 20424433..20424491 645..587 295 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:26:29 has no hits.

LD24887.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:36 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20419611..20420283 646..1318 99 <- Minus
chr3L 20420339..20420396 588..645 100 <- Minus
chr3L 20420454..20420610 431..587 100 <- Minus
chr3L 20420824..20421156 98..430 100 <- Minus
chr3L 20421216..20421275 38..97 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:42 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 47..1180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:11 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 47..1180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:53 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 47..1180 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:45 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 47..1180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:09 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 1..1134 47..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:45 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 51..1368 1..1318 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:11 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 51..1368 1..1318 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:53 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 56..1373 1..1318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:45 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 51..1368 1..1318 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:09 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
Las-RC 56..1373 1..1318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:36 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20430605..20431277 646..1318 100 <- Minus
3L 20431333..20431390 588..645 100 <- Minus
3L 20431448..20431604 431..587 100 <- Minus
3L 20431818..20432150 98..430 100 <- Minus
3L 20432210..20432306 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:36 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20430605..20431277 646..1318 100 <- Minus
3L 20431333..20431390 588..645 100 <- Minus
3L 20431448..20431604 431..587 100 <- Minus
3L 20431818..20432150 98..430 100 <- Minus
3L 20432210..20432306 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:36 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20430605..20431277 646..1318 100 <- Minus
3L 20431333..20431390 588..645 100 <- Minus
3L 20431448..20431604 431..587 100 <- Minus
3L 20431818..20432150 98..430 100 <- Minus
3L 20432210..20432306 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:53 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20425310..20425406 1..97 100   Minus
arm_3L 20424918..20425250 98..430 100 <- Minus
arm_3L 20423705..20424377 646..1318 100 <- Minus
arm_3L 20424433..20424490 588..645 100 <- Minus
arm_3L 20424548..20424704 431..587 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:36 Download gff for LD24887.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20424548..20424704 431..587 100 <- Minus
3L 20423705..20424377 646..1318 100 <- Minus
3L 20424433..20424490 588..645 100 <- Minus
3L 20424918..20425250 98..430 100 <- Minus
3L 20425310..20425406 1..97 100   Minus

LD24887.hyp Sequence

Translation from 0 to 1179

> LD24887.hyp
NRLYFNNCKIIHMYVMLRALKTHAEAPIVVATRAASTNAEKLEEIRERLA
KGPNFHDFVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGK
NYAKIKAQMRELKLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCT
RGCRFCSVKTARKPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDG
GSEHIAETVREIKARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNI
ETVEKLTPYVRDRRAHYRQTLQVLTEAKRFNPNLITKSSIMLGLGETDEE
IENTLKDLREAGVDCVTLGQYMQPTNKHLKVIEYVTPEKFKHWEERGNEL
GFLYTASGPLVRSSYKAGEFFITSILENRKKRQNDTEVPKKQ*

LD24887.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Las-PC 377 CG5231-PC 1..377 16..392 1991 100 Plus

LD24887.pep Sequence

Translation from 37 to 1179

> LD24887.pep
MYVMLRALKTHAEAPIVVATRAASTNAEKLEEIRERLAKGPNFHDFVQNP
DNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMREL
KLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCTRGCRFCSVKTAR
KPPPLDVNEPVNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVREI
KARNSNIFVECLVPDFRGNLECVKTIANSGLDVYAHNIETVEKLTPYVRD
RRAHYRQTLQVLTEAKRFNPNLITKSSIMLGLGETDEEIENTLKDLREAG
VDCVTLGQYMQPTNKHLKVIEYVTPEKFKHWEERGNELGFLYTASGPLVR
SSYKAGEFFITSILENRKKRQNDTEVPKKQ*

LD24887.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24134-PA 376 GF24134-PA 1..376 4..379 1853 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13311-PA 379 GG13311-PA 1..379 1..379 1940 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16746-PA 364 GH16746-PA 1..362 4..369 1712 84.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Las-PC 377 CG5231-PC 1..377 4..380 1991 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13471-PA 364 GI13471-PA 1..362 4..369 1716 85.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11904-PA 350 GL11904-PA 1..349 4..378 1573 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18753-PA 374 GA18753-PA 1..373 4..378 1753 86.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22215-PA 377 GM22215-PA 1..377 4..380 1992 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12187-PA 372 GD12187-PA 1..372 1..380 1883 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11834-PA 286 GJ11834-PA 1..284 86..369 1413 90.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17689-PA 372 GK17689-PA 1..369 4..373 1700 85.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22745-PA 379 GE22745-PA 1..379 1..379 1962 95.8 Plus
Dyak\GE22400-PA 379 GE22400-PA 1..379 1..379 1956 95.5 Plus