BDGP Sequence Production Resources |
Search the DGRC for LD24889
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 248 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | Scsalpha-RA |
Protein status: | LD24889.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1250 |
Gene | Date | Evidence |
---|---|---|
CG1065 | 2001-01-01 | Release 2 assignment |
CG1065 | 2001-10-10 | Blastp of sequenced clone |
CG1065 | 2003-01-01 | Sim4 clustering to Release 3 |
Scsalpha | 2008-04-29 | Release 5.5 accounting |
Scsalpha | 2008-08-15 | Release 5.9 accounting |
Scsalpha | 2008-12-18 | 5.12 accounting |
1250 bp (1250 high quality bases) assembled on 2001-10-10
GenBank Submission: AY089549
> LD24889.complete CACTATTCGGCCGATTTCGCACTGCATTAATTAAACGCGTTTTAATTGAG TAAAGCTGTTTTTATCGCACAACCACCACACACAGATAATATGGCTGCTT CAATGAGGGCGCTGCTGAAAGTGCGAGATGGCTTCGTGGCCGGAGTGCGC TGCAATTCGCAGTACAACAAGACGCGCGGCAACTTGAAGCTGAACGGCGA TTCGCGGGTGATCTGCCAGGGATTCACCGGCAAACAGGGCACGTTCCACA GCCAACAGGCTCTGGAGTACGGCACCAAGTTGGTCGGCGGCATTTCCCCC AAGAAGGGAGGCACCCAGCATCTGGGACTGCCCGTCTTCGCTTCGGTGGC GGAGGCCAAGAAGGCCACCGATCCACATGCCACCGTCATCTATGTGCCAC CACCGGGCGCTGCGGCCGCCATCATCGAGGCTCTGGAAGCGGAGATCCCC CTGATCGTTTGCATTACGGAGGGTGTGCCGCAGCACGACATGGTGAAGGT GAAGCACGCCCTCATCAGCCAGAGCAAGTCGCGATTGGTGGGTCCCAACT GCCCGGGAATCATCGCCCCCGAACAGTGCAAGATCGGCATCATGCCGGGT CACATTCACAAGCGCGGCAAGATCGGCGTGGTCTCGCGCTCGGGAACCTT GACCTACGAGGCCGTGCACCAGACCACGGAGGTGGGTCTGGGCCAGACCC TGTGCGTGGGCATTGGAGGCGATCCGTTCAACGGAACCGACTTCATCGAC TGCCTGGAGGTCTTCCTCAAGGATCCCGAGACCAAGGGCATCATCCTGAT CGGCGAGATCGGAGGCGTTGCCGAGGAGAAGGCTGCCGACTACCTGACCG AGTACAATTCGGGCATCAAGGCCAAGCCTGTCGTCTCGTTCATTGCCGGA GTGTCGGCGCCACCCGGCCGTCGCATGGGTCACGCTGGAGCCATCATTTC CGGAGGAAAGGGAGGTGCCAACGACAAGATCGCCGCCCTGGAGAAGGCCG GCGTCATTGTGACCAGGAGTCCTGCCAAAATGGGCCACGAGCTCTTCAAG GAGATGAAGCGTCTGGAGTTAGTGTAAATAATTAAAGGCCATAACCAAAC CGGAATCCGTACGCCGATCAAAGCGTATACGCAAACTCATGATGATGAAC CTAACGTTAAGCTAAAAGTGTCGAAAATCGAAATTGCATTCGAGCGAACC CAAATAAATTATTGTGAAAAATTACTAGAGAGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scsalpha-RA | 1673 | Scsalpha-RA | 155..1389 | 1..1235 | 6175 | 100 | Plus |
Scsalpha.a | 1495 | Scsalpha.a | 45..896 | 1..852 | 4260 | 100 | Plus |
Scsalpha.a | 1495 | Scsalpha.a | 896..1269 | 862..1235 | 1870 | 100 | Plus |
CG6255-RA | 1188 | CG6255-RA | 541..765 | 526..750 | 375 | 77.7 | Plus |
CG6255-RA | 1188 | CG6255-RA | 793..1020 | 778..1005 | 330 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 3816072..3816522 | 126..576 | 2210 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 3817226..3817597 | 861..1232 | 1845 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 3816877..3817165 | 574..862 | 1445 | 100 | Plus |
chr3L | 24539361 | chr3L | 3813667..3813793 | 1..127 | 635 | 100 | Plus |
chr3R | 27901430 | chr3R | 15285931..15286400 | 995..526 | 610 | 75.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 3816630..3817080 | 126..576 | 2255 | 100 | Plus |
3L | 28110227 | 3L | 3817783..3818157 | 861..1235 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 3817434..3817722 | 574..862 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 3814229..3814355 | 1..127 | 635 | 100 | Plus |
3R | 32079331 | 3R | 19462047..19462526 | 1005..526 | 615 | 75.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 3816630..3817080 | 126..576 | 2255 | 100 | Plus |
3L | 28103327 | 3L | 3817783..3818157 | 861..1235 | 1875 | 100 | Plus |
3L | 28103327 | 3L | 3817434..3817722 | 574..862 | 1445 | 100 | Plus |
3L | 28103327 | 3L | 3814229..3814355 | 1..127 | 635 | 100 | Plus |
3R | 31820162 | 3R | 19203133..19203357 | 750..526 | 375 | 77.7 | Minus |
3R | 31820162 | 3R | 19202878..19203105 | 1005..778 | 330 | 76.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3813667..3813793 | 1..127 | 100 | -> | Plus |
chr3L | 3816074..3816522 | 128..576 | 99 | -> | Plus |
chr3L | 3816880..3817164 | 577..861 | 100 | -> | Plus |
chr3L | 3817227..3817597 | 862..1232 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 1..987 | 91..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RB | 1..987 | 91..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 1..987 | 91..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 1..987 | 91..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 1..987 | 91..1077 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 45..1276 | 1..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 40..1271 | 1..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 19..1250 | 1..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 45..1276 | 1..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Scsalpha-RA | 19..1250 | 1..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3814229..3814355 | 1..127 | 100 | -> | Plus |
3L | 3816632..3817080 | 128..576 | 100 | -> | Plus |
3L | 3817437..3817721 | 577..861 | 100 | -> | Plus |
3L | 3817784..3818154 | 862..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3814229..3814355 | 1..127 | 100 | -> | Plus |
3L | 3816632..3817080 | 128..576 | 100 | -> | Plus |
3L | 3817437..3817721 | 577..861 | 100 | -> | Plus |
3L | 3817784..3818154 | 862..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3814229..3814355 | 1..127 | 100 | -> | Plus |
3L | 3816632..3817080 | 128..576 | 100 | -> | Plus |
3L | 3817437..3817721 | 577..861 | 100 | -> | Plus |
3L | 3817784..3818154 | 862..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3814229..3814355 | 1..127 | 100 | -> | Plus |
arm_3L | 3816632..3817080 | 128..576 | 100 | -> | Plus |
arm_3L | 3817437..3817721 | 577..861 | 100 | -> | Plus |
arm_3L | 3817784..3818154 | 862..1232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3816632..3817080 | 128..576 | 100 | -> | Plus |
3L | 3817437..3817721 | 577..861 | 100 | -> | Plus |
3L | 3817784..3818154 | 862..1232 | 100 | Plus | |
3L | 3814229..3814355 | 1..127 | 100 | -> | Plus |
Translation from 90 to 1076
> LD24889.pep MAASMRALLKVRDGFVAGVRCNSQYNKTRGNLKLNGDSRVICQGFTGKQG TFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVI YVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLV GPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGL GQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAAD YLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAAL EKAGVIVTRSPAKMGHELFKEMKRLELV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24225-PA | 328 | GF24225-PA | 1..328 | 1..328 | 1694 | 99.1 | Plus |
Dana\GF22035-PA | 356 | GF22035-PA | 39..344 | 23..328 | 1060 | 69.3 | Plus |
Dana\GF13329-PA | 1097 | GF13329-PA | 468..801 | 13..322 | 212 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15160-PA | 328 | GG15160-PA | 1..328 | 1..328 | 1692 | 99.1 | Plus |
Dere\GG15952-PA | 342 | GG15952-PA | 21..329 | 20..328 | 1105 | 67 | Plus |
Dere\GG22311-PA | 1095 | GG22311-PA | 539..799 | 74..322 | 201 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16428-PA | 328 | GH16428-PA | 1..328 | 1..328 | 1664 | 97 | Plus |
Dgri\GH12731-PA | 334 | GH12731-PA | 18..327 | 19..328 | 1069 | 67.7 | Plus |
Dgri\GH19829-PA | 1100 | GH19829-PA | 544..804 | 74..322 | 207 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scsalpha1-PB | 328 | CG1065-PB | 1..328 | 1..328 | 1691 | 100 | Plus |
Scsalpha1-PA | 328 | CG1065-PA | 1..328 | 1..328 | 1691 | 100 | Plus |
Scsalpha2-PA | 342 | CG6255-PA | 21..329 | 20..328 | 1112 | 67.6 | Plus |
ATPCL-PF | 1095 | CG8322-PF | 539..799 | 74..322 | 211 | 27.7 | Plus |
ATPCL-PG | 1096 | CG8322-PG | 540..800 | 74..322 | 211 | 27.7 | Plus |
ATPCL-PE | 1112 | CG8322-PE | 556..816 | 74..322 | 211 | 27.7 | Plus |
ATPCL-PD | 1112 | CG8322-PD | 556..816 | 74..322 | 211 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12510-PA | 328 | GI12510-PA | 1..328 | 1..328 | 1601 | 96.3 | Plus |
Dmoj\GI14987-PA | 337 | GI14987-PA | 25..333 | 20..328 | 1040 | 67.3 | Plus |
Dmoj\GI20417-PA | 1097 | GI20417-PA | 541..801 | 74..322 | 208 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25295-PA | 328 | GL25295-PA | 1..328 | 1..328 | 1685 | 98.2 | Plus |
Dper\GL14403-PA | 323 | GL14403-PA | 19..311 | 19..328 | 976 | 65.2 | Plus |
Dper\GL20648-PA | 1069 | GL20648-PA | 531..791 | 74..322 | 206 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23751-PA | 328 | GA23751-PA | 1..328 | 1..328 | 1685 | 98.2 | Plus |
Dpse\GA23007-PA | 340 | GA23007-PA | 19..328 | 19..328 | 1082 | 69.7 | Plus |
Dpse\GA20986-PA | 1087 | GA20986-PA | 531..791 | 74..322 | 207 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14589-PA | 328 | GM14589-PA | 1..328 | 1..328 | 1705 | 99.7 | Plus |
Dsec\GM26905-PA | 342 | GM26905-PA | 21..329 | 20..328 | 1114 | 67.3 | Plus |
Dsec\GM20101-PA | 1095 | GM20101-PA | 539..799 | 74..322 | 204 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13780-PA | 328 | GD13780-PA | 1..328 | 1..328 | 1708 | 100 | Plus |
Dsim\GD20111-PA | 421 | GD20111-PA | 120..408 | 41..328 | 1016 | 66.8 | Plus |
Dsim\GD25577-PA | 1095 | GD25577-PA | 539..799 | 74..322 | 203 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12416-PA | 328 | GJ12416-PA | 1..328 | 1..328 | 1592 | 95.7 | Plus |
Dvir\GJ15342-PA | 344 | GJ15342-PA | 24..333 | 19..328 | 1111 | 67.7 | Plus |
Dvir\GJ20089-PA | 1098 | GJ20089-PA | 542..802 | 74..322 | 209 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20526-PA | 328 | GK20526-PA | 1..328 | 1..328 | 1681 | 97.3 | Plus |
Dwil\GK16245-PA | 351 | GK16245-PA | 1..333 | 5..328 | 1054 | 64.9 | Plus |
Dwil\GK10643-PA | 1095 | GK10643-PA | 539..799 | 74..322 | 210 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Scsalpha-PA | 328 | GE21380-PA | 1..328 | 1..328 | 1705 | 99.7 | Plus |
Dyak\GE25125-PA | 342 | GE25125-PA | 21..329 | 20..328 | 1131 | 67.6 | Plus |
Dyak\GE14108-PA | 1096 | GE14108-PA | 540..800 | 74..322 | 204 | 27.2 | Plus |
Translation from 90 to 1076
> LD24889.hyp MAASMRALLKVRDGFVAGVRCNSQYNKTRGNLKLNGDSRVICQGFTGKQG TFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVI YVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLV GPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGL GQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAAD YLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAAL EKAGVIVTRSPAKMGHELFKEMKRLELV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Scsalpha-PB | 328 | CG1065-PB | 1..328 | 1..328 | 1691 | 100 | Plus |
Scsalpha-PA | 328 | CG1065-PA | 1..328 | 1..328 | 1691 | 100 | Plus |
CG6255-PA | 342 | CG6255-PA | 21..329 | 20..328 | 1112 | 67.6 | Plus |
ATPCL-PF | 1095 | CG8322-PF | 539..799 | 74..322 | 211 | 27.7 | Plus |
ATPCL-PG | 1096 | CG8322-PG | 540..800 | 74..322 | 211 | 27.7 | Plus |