BDGP Sequence Production Resources |
Search the DGRC for LD24894
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 248 |
Well: | 94 |
Vector: | pOT2 |
Associated Gene/Transcript | CG3618-RA |
Protein status: | LD24894.pep: gold |
Preliminary Size: | 3700 |
Sequenced Size: | 2506 |
Gene | Date | Evidence |
---|---|---|
CG3618 | 2001-01-01 | Release 2 assignment |
CG3618 | 2001-09-19 | Blastp of sequenced clone |
CG3618 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3618 | 2008-04-29 | Release 5.5 accounting |
CG3618 | 2008-08-15 | Release 5.9 accounting |
CG3618 | 2008-12-18 | 5.12 accounting |
2506 bp (2506 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058558
> LD24894.complete TTAGATGTCAAAGCGTGTTTGAGCCAATCAACGGAGCTAAAATGCTGCAC TCCGAATTATTGCCCCCCGCTGGCCACCAGGGCATCTATGCTCCACTAAG TCAGGCAATGAGCGATTCTGAATCCGACGAGGAAATTGAGATCCACAACG CCGCCAATCATCGACAAAAATTGCAACAGAAACTTAAGCAAGCTCATCAG CCCAGTCCGCCGGAGCAGCTCCAAGCCCAAAGGATACGCATCCCGCCGAA CACTCTAGCCCTGAAATCACCACATACGAGAGCATCTCCCACGGCCACCA GGATTGTGACTCGAAAACCTTCCGGGAGTACCCAGAAATTCCAACTGGAG GGCAGTAGCTACGCTACCAATATGCAGAATACTTTCCGTTCCGTCATGTT GAGCGATAATGGTGGAGTGGGATCGGAGTTGTCCCACTTCAACAGTGATT TCGATGCGAATGCAGACAATGTAGCCATCTTGGGGGACCATAATCAGACC GGCGAGGATTTGTCCAAAAGAACCCCCATGTCACCGGCAAGGAAATGCTG TTTCATAGGCAGCCTGCTCCTGTGCTTCCTCGCCGTCGTATCCTTTGTAT GGCTGGTGCCCTGCGGTAATCCTGATGGCACTGGATCCTGTCCAGCCGTC GGAGACCGGATAAAGACCCACAACTGGTTCAATAATTACACAAAGGCGGA ACTTAAGGGAGGAATCAATGTGGTCGGTGGTCTAAGAGCCTGGGAGAACA ACCTGATATTTATGTACCGCGGGGATGCCTTTTTCCCGGAATTCCGACCA GGTAACGAGCGGCGTAATGGCATCATCTGTTTGATTGGCTCCTCGGGAGC TGTGGCTTGGTTTGTGGAGATGGTTGATGAGCCTGTGGCCCTGGACTGCA CCCTCATAGACATAGATGGCAATGGGAAACCAGCTTGCTTGGTACTGGAT GAGTATGGCGAACTTGGAGCCATTCATCCCGTCTCTGGTGAATGGATCTG GTGGCATAAGGAGCGATCAGCCCGAAAAGTTGATGCCTATGACTTCCCAG TTATCCTGCCTGATCTGGATGCAGATGGAGTGCTGGACCTCCTGCTCGTG ACTAGTTTGTCACTGGTACAGCGCACTAAATCGCTTGCCCAGCTCAAACA TGAATCTCCGGAAAAACTAGAGGCTCGCAATGTGCTGCGCATGCTGTCGG GCAGAAGAGGAGCACCTATTGGTGATGGCTTCACCATTCACGACTGCGAC ACTCTCAGCAACTTGAAGCTCGAGGCGGGCAACGTGAGCTTCACCTGTCA GCGAGTCAATGACACAGAGCAGCAGCGTTCCAAGAGTCTGGCCGAGCTGT ATGCCCTGATCACCAACAAATCTATTGTAAGCCAACGACTAGGCACCTCA AAGATCTCCCAGCATAGGAACCATGGCCAGCGGCGGGAACTGGATGCCCA GAGGAACATATATTCTTTAAGTGGACGGGAACTCGTGGTGGAGAACCGAG GACGCTGTCCGGAGGATTGCAATGTTACCTTTGTTCTCAGTGAAGTCCGC GATGGCAAACCCCATGTGGTGGAAAACTTCATCACGAGCAGAATGTACGG GATGAAGCCCGCCGAATGGCACTTCAAGAATACCAAGTCGCAAATGTCCG GCTTTGTGATGAAGTTCTGGAAGTGGCATGGCTTGGCTAAGCCTTCCAAA CAGACTTCCGCCAGCAGTAACAGCAACAATGTGCAGAAGAGTGGCAGCAA CAATCACACCAAGAACATGAATGCCATCAAGGATAAAGAAAAGTCTCAGG CTCAGGCAAAGAAACAACAGCAGCACCAACGTCTAAGAAGAAGCACGGAG GCGAAAGATCAAGAGTTTCAACCGGCTCACCAGGAGTTCGATTTCTTCGA GCATGTGAAGCAGAAGAGGGAATCATTCGGACTGCCATCTTCAACTATGA ACCTGACCAAATCGAGTGGAATCTCTCCCGGCGGAAGCTACAAAATGAAC ATGATTACAGAAACCGTGCTGCTAGTGGTTTTCGTGGGGGCCGATACCCA CATTGAGAACACCTCGCGAAGCAACATCGTCCAGTTTTGCCGTCACGACC GCAAGGAGGTGGTGTGCCAACCGGATCTGAACAACCAGGACCACTCGATG CTTGTCGCAGATCTCGACCAGGACGGATCTCAGGAGCTAGTCACATACAT GTCCACCTTCGTGCATCCCGAGGATCAGCCGCTGAGCGAATGGAAACTGC TGACCTACGTCCGTTTGTTGCGCCTCCAAGCAGAGCTACCTTCCTACTTC GAGGACCACAAGAACAACTAGATGGGCATTCAGATGGCGATCAGGAACTG AGTTGAGTTATAGAGCATTTAGCCAGCAGAAGCGTGCTGTCGATCATAAA TAGTAGTTTAAACTAGTTGCGTGCATTACATTGTACATTAAAAACCTTTT CTAGCCTCCCATAATAAATTAGTCGACAAATAGATTTCAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20802374..20804827 | 2488..35 | 12270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20813351..20815806 | 2490..35 | 12280 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2504 | 1712..1886 | 193 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6940 | 1712..1904 | 176 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 1717..1882 | 168 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6867 | 1744..1885 | 156 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6912 | 1712..1845 | 155 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2509 | 1712..1845 | 131 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6823 | 1797..1886 | 116 | 61.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20802374..20804825 | 37..2488 | 100 | <- | Minus |
chr3L | 20804924..20804959 | 1..36 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 1..2280 | 42..2321 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RB | 1..2280 | 42..2321 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 1..2280 | 42..2321 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 1..2280 | 42..2321 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 1..2280 | 42..2321 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 99..2586 | 1..2488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RB | 72..2559 | 1..2488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 102..2589 | 1..2488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 99..2586 | 1..2488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3618-RA | 102..2589 | 1..2488 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20813353..20815804 | 37..2488 | 100 | <- | Minus |
3L | 20815903..20815938 | 1..36 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20813353..20815804 | 37..2488 | 100 | <- | Minus |
3L | 20815903..20815938 | 1..36 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20813353..20815804 | 37..2488 | 100 | <- | Minus |
3L | 20815903..20815938 | 1..36 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20806453..20808904 | 37..2488 | 100 | <- | Minus |
arm_3L | 20809003..20809038 | 1..36 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20806453..20808904 | 37..2488 | 100 | <- | Minus |
3L | 20809003..20809038 | 1..36 | 100 | Minus |
Translation from 2 to 2320
> LD24894.hyp RCQSVFEPINGAKMLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNA ANHRQKLQQKLKQAHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATR IVTRKPSGSTQKFQLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDF DANADNVAILGDHNQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVW LVPCGNPDGTGSCPAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENN LIFMYRGDAFFPEFRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCT LIDIDGNGKPACLVLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPV ILPDLDADGVLDLLLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSG RRGAPIGDGFTIHDCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELY ALITNKSIVSQRLGTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRG RCPEDCNVTFVLSEVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSG FVMKFWKWHGLAKPSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQA QAKKQQQHQRLRRSTEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMN LTKSSGISPGGSYKMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDR KEVVCQPDLNNQDHSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLL TYVRLLRLQAELPSYFEDHKNN*
Translation from 41 to 2320
> LD24894.pep MLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNAANHRQKLQQKLKQ AHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATRIVTRKPSGSTQKF QLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDFDANADNVAILGDH NQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVWLVPCGNPDGTGSC PAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENNLIFMYRGDAFFPE FRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCTLIDIDGNGKPACL VLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPVILPDLDADGVLDL LLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSGRRGAPIGDGFTIH DCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELYALITNKSIVSQRL GTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRGRCPEDCNVTFVLS EVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSGFVMKFWKWHGLAK PSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQAQAKKQQQHQRLRR STEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMNLTKSSGISPGGSY KMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDRKEVVCQPDLNNQD HSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLLTYVRLLRLQAELP SYFEDHKNN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10203-PA | 758 | GF10203-PA | 1..758 | 1..759 | 3018 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13279-PA | 760 | GG13279-PA | 1..760 | 1..759 | 3677 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15568-PA | 829 | GH15568-PA | 1..829 | 1..759 | 2223 | 56.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3618-PB | 759 | CG3618-PB | 1..759 | 1..759 | 4001 | 100 | Plus |
CG3618-PA | 759 | CG3618-PA | 1..759 | 1..759 | 4001 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16843-PA | 774 | GI16843-PA | 1..774 | 1..759 | 2177 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26323-PA | 806 | GL26323-PA | 1..806 | 1..759 | 2770 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17562-PA | 805 | GA17562-PA | 1..805 | 1..759 | 2789 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22183-PA | 759 | GM22183-PA | 1..759 | 1..759 | 3996 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12158-PA | 759 | GD12158-PA | 1..759 | 1..759 | 3992 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12593-PA | 808 | GJ12593-PA | 1..808 | 1..759 | 2346 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13540-PA | 780 | GK13540-PA | 1..780 | 2..759 | 2425 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22376-PA | 759 | GE22376-PA | 1..759 | 1..759 | 3691 | 93.5 | Plus |