Clone LD24894 Report

Search the DGRC for LD24894

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:248
Well:94
Vector:pOT2
Associated Gene/TranscriptCG3618-RA
Protein status:LD24894.pep: gold
Preliminary Size:3700
Sequenced Size:2506

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3618 2001-01-01 Release 2 assignment
CG3618 2001-09-19 Blastp of sequenced clone
CG3618 2003-01-01 Sim4 clustering to Release 3
CG3618 2008-04-29 Release 5.5 accounting
CG3618 2008-08-15 Release 5.9 accounting
CG3618 2008-12-18 5.12 accounting

Clone Sequence Records

LD24894.complete Sequence

2506 bp (2506 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058558

> LD24894.complete
TTAGATGTCAAAGCGTGTTTGAGCCAATCAACGGAGCTAAAATGCTGCAC
TCCGAATTATTGCCCCCCGCTGGCCACCAGGGCATCTATGCTCCACTAAG
TCAGGCAATGAGCGATTCTGAATCCGACGAGGAAATTGAGATCCACAACG
CCGCCAATCATCGACAAAAATTGCAACAGAAACTTAAGCAAGCTCATCAG
CCCAGTCCGCCGGAGCAGCTCCAAGCCCAAAGGATACGCATCCCGCCGAA
CACTCTAGCCCTGAAATCACCACATACGAGAGCATCTCCCACGGCCACCA
GGATTGTGACTCGAAAACCTTCCGGGAGTACCCAGAAATTCCAACTGGAG
GGCAGTAGCTACGCTACCAATATGCAGAATACTTTCCGTTCCGTCATGTT
GAGCGATAATGGTGGAGTGGGATCGGAGTTGTCCCACTTCAACAGTGATT
TCGATGCGAATGCAGACAATGTAGCCATCTTGGGGGACCATAATCAGACC
GGCGAGGATTTGTCCAAAAGAACCCCCATGTCACCGGCAAGGAAATGCTG
TTTCATAGGCAGCCTGCTCCTGTGCTTCCTCGCCGTCGTATCCTTTGTAT
GGCTGGTGCCCTGCGGTAATCCTGATGGCACTGGATCCTGTCCAGCCGTC
GGAGACCGGATAAAGACCCACAACTGGTTCAATAATTACACAAAGGCGGA
ACTTAAGGGAGGAATCAATGTGGTCGGTGGTCTAAGAGCCTGGGAGAACA
ACCTGATATTTATGTACCGCGGGGATGCCTTTTTCCCGGAATTCCGACCA
GGTAACGAGCGGCGTAATGGCATCATCTGTTTGATTGGCTCCTCGGGAGC
TGTGGCTTGGTTTGTGGAGATGGTTGATGAGCCTGTGGCCCTGGACTGCA
CCCTCATAGACATAGATGGCAATGGGAAACCAGCTTGCTTGGTACTGGAT
GAGTATGGCGAACTTGGAGCCATTCATCCCGTCTCTGGTGAATGGATCTG
GTGGCATAAGGAGCGATCAGCCCGAAAAGTTGATGCCTATGACTTCCCAG
TTATCCTGCCTGATCTGGATGCAGATGGAGTGCTGGACCTCCTGCTCGTG
ACTAGTTTGTCACTGGTACAGCGCACTAAATCGCTTGCCCAGCTCAAACA
TGAATCTCCGGAAAAACTAGAGGCTCGCAATGTGCTGCGCATGCTGTCGG
GCAGAAGAGGAGCACCTATTGGTGATGGCTTCACCATTCACGACTGCGAC
ACTCTCAGCAACTTGAAGCTCGAGGCGGGCAACGTGAGCTTCACCTGTCA
GCGAGTCAATGACACAGAGCAGCAGCGTTCCAAGAGTCTGGCCGAGCTGT
ATGCCCTGATCACCAACAAATCTATTGTAAGCCAACGACTAGGCACCTCA
AAGATCTCCCAGCATAGGAACCATGGCCAGCGGCGGGAACTGGATGCCCA
GAGGAACATATATTCTTTAAGTGGACGGGAACTCGTGGTGGAGAACCGAG
GACGCTGTCCGGAGGATTGCAATGTTACCTTTGTTCTCAGTGAAGTCCGC
GATGGCAAACCCCATGTGGTGGAAAACTTCATCACGAGCAGAATGTACGG
GATGAAGCCCGCCGAATGGCACTTCAAGAATACCAAGTCGCAAATGTCCG
GCTTTGTGATGAAGTTCTGGAAGTGGCATGGCTTGGCTAAGCCTTCCAAA
CAGACTTCCGCCAGCAGTAACAGCAACAATGTGCAGAAGAGTGGCAGCAA
CAATCACACCAAGAACATGAATGCCATCAAGGATAAAGAAAAGTCTCAGG
CTCAGGCAAAGAAACAACAGCAGCACCAACGTCTAAGAAGAAGCACGGAG
GCGAAAGATCAAGAGTTTCAACCGGCTCACCAGGAGTTCGATTTCTTCGA
GCATGTGAAGCAGAAGAGGGAATCATTCGGACTGCCATCTTCAACTATGA
ACCTGACCAAATCGAGTGGAATCTCTCCCGGCGGAAGCTACAAAATGAAC
ATGATTACAGAAACCGTGCTGCTAGTGGTTTTCGTGGGGGCCGATACCCA
CATTGAGAACACCTCGCGAAGCAACATCGTCCAGTTTTGCCGTCACGACC
GCAAGGAGGTGGTGTGCCAACCGGATCTGAACAACCAGGACCACTCGATG
CTTGTCGCAGATCTCGACCAGGACGGATCTCAGGAGCTAGTCACATACAT
GTCCACCTTCGTGCATCCCGAGGATCAGCCGCTGAGCGAATGGAAACTGC
TGACCTACGTCCGTTTGTTGCGCCTCCAAGCAGAGCTACCTTCCTACTTC
GAGGACCACAAGAACAACTAGATGGGCATTCAGATGGCGATCAGGAACTG
AGTTGAGTTATAGAGCATTTAGCCAGCAGAAGCGTGCTGTCGATCATAAA
TAGTAGTTTAAACTAGTTGCGTGCATTACATTGTACATTAAAAACCTTTT
CTAGCCTCCCATAATAAATTAGTCGACAAATAGATTTCAAAAAAAAAAAA
AAAAAA

LD24894.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3618.a 2561 CG3618.a 72..2561 1..2490 12450 100 Plus
CG3618-RA 2606 CG3618-RA 117..2606 1..2490 12450 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20802374..20804827 2488..35 12270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20813351..20815806 2490..35 12280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20806451..20808906 2490..35 12280 100 Minus
3L 28103327 3L 20809003..20809038 36..1 180 100 Minus
Blast to na_te.dros performed 2019-03-16 11:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2504 1712..1886 193 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6940 1712..1904 176 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 1717..1882 168 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6867 1744..1885 156 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6912 1712..1845 155 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2509 1712..1845 131 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6823 1797..1886 116 61.5 Plus

LD24894.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:24 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20802374..20804825 37..2488 100 <- Minus
chr3L 20804924..20804959 1..36 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:44 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 1..2280 42..2321 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:59 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RB 1..2280 42..2321 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:24:45 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 1..2280 42..2321 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:34 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 1..2280 42..2321 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:38 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 1..2280 42..2321 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:30 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 99..2586 1..2488 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:59 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RB 72..2559 1..2488 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:24:45 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 102..2589 1..2488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:34 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 99..2586 1..2488 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:38 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
CG3618-RA 102..2589 1..2488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:24 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20813353..20815804 37..2488 100 <- Minus
3L 20815903..20815938 1..36 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:24 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20813353..20815804 37..2488 100 <- Minus
3L 20815903..20815938 1..36 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:24 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20813353..20815804 37..2488 100 <- Minus
3L 20815903..20815938 1..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:24:45 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20806453..20808904 37..2488 100 <- Minus
arm_3L 20809003..20809038 1..36 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:22 Download gff for LD24894.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20806453..20808904 37..2488 100 <- Minus
3L 20809003..20809038 1..36 100   Minus

LD24894.hyp Sequence

Translation from 2 to 2320

> LD24894.hyp
RCQSVFEPINGAKMLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNA
ANHRQKLQQKLKQAHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATR
IVTRKPSGSTQKFQLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDF
DANADNVAILGDHNQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVW
LVPCGNPDGTGSCPAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENN
LIFMYRGDAFFPEFRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCT
LIDIDGNGKPACLVLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPV
ILPDLDADGVLDLLLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSG
RRGAPIGDGFTIHDCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELY
ALITNKSIVSQRLGTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRG
RCPEDCNVTFVLSEVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSG
FVMKFWKWHGLAKPSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQA
QAKKQQQHQRLRRSTEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMN
LTKSSGISPGGSYKMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDR
KEVVCQPDLNNQDHSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLL
TYVRLLRLQAELPSYFEDHKNN*

LD24894.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3618-PB 759 CG3618-PB 1..759 14..772 4001 100 Plus
CG3618-PA 759 CG3618-PA 1..759 14..772 4001 100 Plus

LD24894.pep Sequence

Translation from 41 to 2320

> LD24894.pep
MLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNAANHRQKLQQKLKQ
AHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATRIVTRKPSGSTQKF
QLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDFDANADNVAILGDH
NQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVWLVPCGNPDGTGSC
PAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENNLIFMYRGDAFFPE
FRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCTLIDIDGNGKPACL
VLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPVILPDLDADGVLDL
LLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSGRRGAPIGDGFTIH
DCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELYALITNKSIVSQRL
GTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRGRCPEDCNVTFVLS
EVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSGFVMKFWKWHGLAK
PSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQAQAKKQQQHQRLRR
STEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMNLTKSSGISPGGSY
KMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDRKEVVCQPDLNNQD
HSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLLTYVRLLRLQAELP
SYFEDHKNN*

LD24894.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10203-PA 758 GF10203-PA 1..758 1..759 3018 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13279-PA 760 GG13279-PA 1..760 1..759 3677 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15568-PA 829 GH15568-PA 1..829 1..759 2223 56.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3618-PB 759 CG3618-PB 1..759 1..759 4001 100 Plus
CG3618-PA 759 CG3618-PA 1..759 1..759 4001 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16843-PA 774 GI16843-PA 1..774 1..759 2177 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26323-PA 806 GL26323-PA 1..806 1..759 2770 68.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17562-PA 805 GA17562-PA 1..805 1..759 2789 68.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22183-PA 759 GM22183-PA 1..759 1..759 3996 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12158-PA 759 GD12158-PA 1..759 1..759 3992 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12593-PA 808 GJ12593-PA 1..808 1..759 2346 57.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13540-PA 780 GK13540-PA 1..780 2..759 2425 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22376-PA 759 GE22376-PA 1..759 1..759 3691 93.5 Plus