Clone LD24903 Report

Search the DGRC for LD24903

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:249
Well:3
Vector:pOT2
Associated Gene/TranscriptCG7414-RA
Protein status:LD24903.pep: gold
Preliminary Size:2200
Sequenced Size:2336

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7414 2001-01-01 Release 2 assignment
CG7414 2001-07-04 Blastp of sequenced clone
CG7414 2003-01-01 Sim4 clustering to Release 3
CG7414 2008-04-29 Release 5.5 accounting
CG7414 2008-08-15 Release 5.9 accounting
CG7414 2008-12-18 5.12 accounting

Clone Sequence Records

LD24903.complete Sequence

2336 bp (2336 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051717

> LD24903.complete
AACAAAAACAACAGCAACAACACCACCGACGTGCTTGTTCCTGTGTGTGT
GTGCGTGTGAGATTGGAAGACAATGGCTGCAGCTGCGGATCTGGTTGTTC
CTACCCTTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCG
GGCTCCAAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGAC
GAAGAGCTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCT
ACTCCAACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCA
GCCAGCTGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCT
CCAATTCTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCA
TCACTAAGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTG
GCCACCGGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTG
GCAGCCCTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCG
GCGAGGCACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCC
ACCACATCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGG
TCCCGGTAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGG
GCGCTCCGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAAT
CAGACCGTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTT
GTGGAACAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGG
ATAAGAGCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCA
ACCAAGGGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGACCGGTGCA
TTGTGTCAAGTGGAGTCCTAAGGCAACTGAGTTTGTAGTCGTATACGGCT
TCATGCCATCCAAGGCTGCTCTCTACAACCTCAAGTGCGACGTAGTCTTC
GACTTCGGTGAGGGTCCACGCAACTGTGCCTACTTCAATCCATTTGGCAA
CCTCATAGCTCTCGCCGGCTTCGGCAATCTGCCTGGAGCCGTCGAGGTGT
GGGATGTGTCCAAGCGCGAGAAGCTGGCTAACCTCAAGTGTGCTGATACC
ACGGTTTTTGAGTGGCATCCCAATGGCGAGTGGTTCGTCACGGCCACCAC
CGCGCCCAGGCTGCGCATTAGCAATGGGTTCAAGGTGTACCACTACTCCG
GGGCCCTGCTCCACGAGACCATGTGGCCCCAGGGTCAGGAATTGTTGGGA
ATTGAGTGGCAGCAGTTTGCGGATAAGACGTTCAGCGAGCCCAAGATTAC
CAAGGCCAAGCACGAGGGCATCAAGTCCAGCCAGCCAGAGGCCAGCAAGA
AGGCTTACACACCGCCTCATCTGCGCTTGTTGAAGGAGGGCAAGAATCCG
GAAAAGTATCTGCCCCAGCCGAGTATTCCCGGACTGGCACCAACGGCAGC
AGCAGGTGGTGTCAACGGAAACAAGAGGAATAACAAGAACAAACAGCGAA
GCGCTAGGAAGGATGTGAACGTTGTAAATGGTGGCGATGCGGATTCTGCC
CCGACTGAGGTGGTCGATCAAGCTGCTCCGGTTGCTCGCCAGTCGCCCGT
TTTCGTGGCTGCAGAGGAGCGGAAGCCGCAGCATACTCCCAGACAGAAGT
ACCAGCCAGATAACGCTGCCGATCAGCCACCGAATTCGTATGGACAGGGT
CATCCCAATGGCCAGCACATCAGCGATAAGGAGCGCAAGATTCGCAGCGT
CGCCAAGAAGCTGTCGGACATTAAGAAGCTGAAGGTCCGACGCAGCCAGG
GCGAGAATCTGGAGCTGAACCAACTGAACAAGATTAAGATGGAAGCACAG
TACCTGGATGAGCTCAAGGCTCTCAAGCAGTCTGCCTAGGAGGACGTTAA
TGGCGTTGACGATGACGACGGCGGCGAGAAGGCTGAGGGATGCGAGGAGT
AATTGCTCTTGTGATTGTGATACAGCACCTCTTCTCAGCTCCACTCCACT
CTACTCACCTCCTGTTCGTCCCCTTCCTGCTGTTTTACGCTCAGTTTGTG
GCCCATTTGCCGCATAAGTTTCAAGTTAAAACATTTTTCTACTATTGTGA
TTTCCCAACTAATTTCGGCAAAACGTACAGTAACTCCCGTAAACAACAAA
TTTATGTACCAAATTGTGCTACCAAGTAATAAAGATGTTTCCACCAAAAT
CTGCGGATTACTGCTCCCAAAAAAAAAAAAAAAAAA

LD24903.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RA 2638 CG7414-RA 275..2594 1..2320 11600 100 Plus
CG7414.a 2868 CG7414.a 266..1822 1..1557 7785 100 Plus
CG7414-RB 2644 CG7414-RB 148..1704 1..1557 7785 100 Plus
CG7414.a 2868 CG7414.a 2104..2868 1556..2320 3825 100 Plus
CG7414-RB 2644 CG7414-RB 1880..2644 1556..2320 3825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21814185..21815351 113..1279 5835 100 Plus
chr3L 24539361 chr3L 21816025..21816791 1552..2318 3835 100 Plus
chr3L 24539361 chr3L 21815409..21815689 1277..1557 1405 100 Plus
chr3L 24539361 chr3L 21813901..21814012 1..112 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21825250..21826416 113..1279 5835 100 Plus
3L 28110227 3L 21827090..21827858 1552..2320 3845 100 Plus
3L 28110227 3L 21826474..21826754 1277..1557 1405 100 Plus
3L 28110227 3L 21824966..21825077 1..112 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21818350..21819516 113..1279 5835 100 Plus
3L 28103327 3L 21820190..21820958 1552..2320 3845 100 Plus
3L 28103327 3L 21819574..21819854 1277..1557 1405 100 Plus
3L 28103327 3L 21818066..21818177 1..112 560 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:25:14 has no hits.

LD24903.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:18 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21813901..21814012 1..112 100 -> Plus
chr3L 21814185..21815349 113..1277 100 -> Plus
chr3L 21815410..21815687 1278..1555 100 -> Plus
chr3L 21816029..21816791 1556..2318 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:47 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1..1917 73..1989 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:34 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RD 1..1917 73..1989 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:48 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1..1917 73..1989 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:11 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1..1917 73..1989 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:46 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1..1917 73..1989 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:26 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 148..2465 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:34 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 227..2544 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:48 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 227..2544 1..2318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:11 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 148..2465 1..2318 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:46 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 227..2544 1..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:18 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21824966..21825077 1..112 100 -> Plus
3L 21825250..21826414 113..1277 100 -> Plus
3L 21826475..21826752 1278..1555 100 -> Plus
3L 21827094..21827856 1556..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:18 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21824966..21825077 1..112 100 -> Plus
3L 21825250..21826414 113..1277 100 -> Plus
3L 21826475..21826752 1278..1555 100 -> Plus
3L 21827094..21827856 1556..2318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:18 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21824966..21825077 1..112 100 -> Plus
3L 21825250..21826414 113..1277 100 -> Plus
3L 21826475..21826752 1278..1555 100 -> Plus
3L 21827094..21827856 1556..2318 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:48 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21819575..21819852 1278..1555 100 -> Plus
arm_3L 21818066..21818177 1..112 100 -> Plus
arm_3L 21818350..21819514 113..1277 100 -> Plus
arm_3L 21820194..21820956 1556..2318 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:50 Download gff for LD24903.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21818066..21818177 1..112 100 -> Plus
3L 21818350..21819514 113..1277 100 -> Plus
3L 21819575..21819852 1278..1555 100 -> Plus
3L 21820194..21820956 1556..2318 100   Plus

LD24903.pep Sequence

Translation from 72 to 1988

> LD24903.pep
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA*

LD24903.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10931-PA 642 GF10931-PA 1..642 1..638 2846 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16228-PA 638 GG16228-PA 1..638 1..638 3152 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14427-PA 683 GH14427-PA 1..531 1..519 2381 83.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PD 638 CG7414-PD 1..638 1..638 3385 100 Plus
CG7414-PA 638 CG7414-PA 1..638 1..638 3385 100 Plus
CG7414-PE 555 CG7414-PE 1..495 1..495 2652 100 Plus
CG7414-PC 555 CG7414-PC 1..495 1..495 2652 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13558-PA 694 GI13558-PA 1..538 1..535 2444 84.1 Plus
Dmoj\GI13558-PA 694 GI13558-PA 640..693 584..637 225 85.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24803-PA 585 GL24803-PA 1..584 1..637 2174 68.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20333-PA 645 GA20333-PA 1..644 1..637 2694 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22412-PA 638 GM22412-PA 1..638 1..638 3371 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15005-PA 438 GD15005-PA 1..438 200..638 2273 96.6 Plus
Dsim\GD15004-PA 194 GD15004-PA 1..182 1..182 960 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11919-PA 646 GJ11919-PA 1..645 1..637 2636 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16781-PA 651 GK16781-PA 1..651 1..638 2648 78.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22589-PA 638 GE22589-PA 1..638 1..638 3138 95.3 Plus

LD24903.hyp Sequence

Translation from 72 to 1988

> LD24903.hyp
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA*

LD24903.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PD 638 CG7414-PD 1..638 1..638 3385 100 Plus
CG7414-PA 638 CG7414-PA 1..638 1..638 3385 100 Plus
CG7414-PE 555 CG7414-PE 1..495 1..495 2652 100 Plus
CG7414-PC 555 CG7414-PC 1..495 1..495 2652 100 Plus