Clone LD24910 Report

Search the DGRC for LD24910

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:249
Well:10
Vector:pOT2
Associated Gene/TranscriptCG8010-RA
Protein status:LD24910.pep: gold
Preliminary Size:3700
Sequenced Size:1579

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8010 2001-01-01 Release 2 assignment
CG8010 2001-09-19 Blastp of sequenced clone
CG8010 2003-01-01 Sim4 clustering to Release 3
CG8010 2008-04-29 Release 5.5 accounting
CG8010 2008-08-15 Release 5.9 accounting
CG8010 2008-12-18 5.12 accounting

Clone Sequence Records

LD24910.complete Sequence

1579 bp (1579 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058559

> LD24910.complete
ACTCGCTGTGTATTTTCGGAATTTAATTTGGCAACTTCCCCCCTCCGAAT
TCAGCGACTTGGCCTGCTCGCACCGCCTGGACACCTGCTACTGCAGTGCT
CGCAACATGGACCACCACACGTACGCCAAGAGCGGATCCAAGAAGTGGTC
CGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCGGCGGACGAGC
TCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAAAAAATTCAAG
GAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTACGCAAGCAGTG
GTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAACACACTGGGCG
TCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGAATGGGAGTTT
TTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCGACCTGCACTC
GTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAATAACCTGGCCA
TCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCCACTCATGCTG
GGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGCCCAACGGATG
CGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGCCACGGGAACA
GTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGCCGAGGCGACG
GCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGTGCATGCTGAG
CAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATGATTGGCGGCG
AGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGAGGCGACAGTG
CCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGCCTATCCCGAA
GGCGCGTAAATTGTTAAGGAAACACCATCGCAAAGGTCTCAGCGAAAAGG
AGAAGTATTACAGGCACCGCCGTCGCTACGAGCAGCGAATGGAGAAGCGT
CTGATGGGACTGTGCACCGTGGTGGGACAACTGCTGAAGCAGTTTGCTCC
CGACATGGATGTCCAGCCACTGTTGGCCCTGGGCAGCGATGTGACGCTCA
GCTCGCCAGCGCCAAGCAGCAGTGACGAGGAGAGGAGCGAGGTTCTGGAG
GAGACGGAGGAGGATCAAGAGCTCCAGCAGGAGCAGCAGCAGATGCAGCT
GGAGCTGGAGCAACAGAAGCTGGGAGTCGAGGCCGATGCCATGACACTCA
GAGTCTGAGCGAACGCATCCGAGTGCTTCTCTGGTCGGTCGCCTGCTTGT
TTCAGGGTTCAAGTGCAAGTTCCTAGCTGTGTTGCTTCACAATCAACAAA
CAAAATATCGTGTGGGCTCTCAAATGACTCCCACCACTGCGCTTCGTCGT
CATTACGCGGACAACCGTCCACAGTGATTTTCCGCTAAAGAATAGGGCGT
GCACAGCGCCGCATAGATAGACACGTACGTTCGTTCAGTGATAACGAAAG
CATAATACGTTAATCGAAAGAACGAATGTAAACGCATTAGATAAACCAGA
AAGCAAACCAAAAAAAAAAAAAAAAAAAA

LD24910.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-RA 1900 CG8010-RA 193..1754 1..1562 7810 100 Plus
CG8010.a 2055 CG8010.a 72..1633 1..1562 7810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19156212..19156935 964..241 3575 99.6 Minus
chrX 22417052 chrX 19155551..19156149 1559..961 2995 100 Minus
chrX 22417052 chrX 19157589..19157735 147..1 735 100 Minus
chrX 22417052 chrX 19157418..19157511 240..147 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19267317..19268040 964..241 3620 100 Minus
X 23542271 X 19266653..19267254 1562..961 3010 100 Minus
X 23542271 X 19268676..19268822 147..1 735 100 Minus
X 23542271 X 19268505..19268598 240..147 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19275415..19276138 964..241 3620 100 Minus
X 23527363 X 19274751..19275352 1562..961 3010 100 Minus
X 23527363 X 19276774..19276920 147..1 735 100 Minus
X 23527363 X 19276603..19276696 240..147 470 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:05:50 has no hits.

LD24910.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:06:46 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19155551..19156146 964..1559 92 <- Minus
chrX 19156213..19156935 241..963 99 <- Minus
chrX 19157418..19157511 147..240 100 <- Minus
chrX 19157590..19157735 1..146 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:49 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 107..1258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:01 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 107..1258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:06:09 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 107..1258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:35 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 107..1258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:57:02 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 1..1152 107..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:32 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 63..1621 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:00 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 63..1621 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:09 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 75..1633 1..1559 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:35 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 63..1621 1..1559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:57:02 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
CG8010-RA 75..1633 1..1559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:46 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
X 19266656..19267251 964..1559 100 <- Minus
X 19267318..19268040 241..963 100 <- Minus
X 19268505..19268598 147..240 100 <- Minus
X 19268677..19268822 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:46 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
X 19266656..19267251 964..1559 100 <- Minus
X 19267318..19268040 241..963 100 <- Minus
X 19268505..19268598 147..240 100 <- Minus
X 19268677..19268822 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:46 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
X 19266656..19267251 964..1559 100 <- Minus
X 19267318..19268040 241..963 100 <- Minus
X 19268505..19268598 147..240 100 <- Minus
X 19268677..19268822 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:09 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19160689..19161284 964..1559 100 <- Minus
arm_X 19161351..19162073 241..963 100 <- Minus
arm_X 19162538..19162631 147..240 100 <- Minus
arm_X 19162710..19162855 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:24 Download gff for LD24910.complete
Subject Subject Range Query Range Percent Splice Strand
X 19274754..19275349 964..1559 100 <- Minus
X 19275416..19276138 241..963 100 <- Minus
X 19276603..19276696 147..240 100 <- Minus
X 19276775..19276920 1..146 100   Minus

LD24910.hyp Sequence

Translation from 0 to 1257

> LD24910.hyp
LAVYFRNLIWQLPPSEFSDLACSHRLDTCYCSARNMDHHTYAKSGSKKWS
AEEKRNLVVQRIAADELFSRYSPKHAEPWKKFKEMAKIGDFSEIALRKQW
FSMVQRYRIHKANTLGVPLNKQSIEELNKEWEFFGLIHAYMNQKTADLHS
YALKEPNVEQPNNNLAIASVYSCDEAQLSPLMLGVLNDHNFGERSPPNGC
DTDDMDESNTSPCHGNSGHSNNDELDRLLAEATARKDAAVGDGEDVCMLS
NTNCHEMECGPVMIGGEVSLSNSRYNDFEEATVPTATAVKSEKPEKPIPK
ARKLLRKHHRKGLSEKEKYYRHRRRYEQRMEKRLMGLCTVVGQLLKQFAP
DMDVQPLLALGSDVTLSSPAPSSSDEERSEVLEETEEDQELQQEQQQMQL
ELEQQKLGVEADAMTLRV*

LD24910.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-PA 383 CG8010-PA 1..383 36..418 2009 100 Plus

LD24910.pep Sequence

Translation from 106 to 1257

> LD24910.pep
MDHHTYAKSGSKKWSAEEKRNLVVQRIAADELFSRYSPKHAEPWKKFKEM
AKIGDFSEIALRKQWFSMVQRYRIHKANTLGVPLNKQSIEELNKEWEFFG
LIHAYMNQKTADLHSYALKEPNVEQPNNNLAIASVYSCDEAQLSPLMLGV
LNDHNFGERSPPNGCDTDDMDESNTSPCHGNSGHSNNDELDRLLAEATAR
KDAAVGDGEDVCMLSNTNCHEMECGPVMIGGEVSLSNSRYNDFEEATVPT
ATAVKSEKPEKPIPKARKLLRKHHRKGLSEKEKYYRHRRRYEQRMEKRLM
GLCTVVGQLLKQFAPDMDVQPLLALGSDVTLSSPAPSSSDEERSEVLEET
EEDQELQQEQQQMQLELEQQKLGVEADAMTLRV*

LD24910.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15952-PA 356 GF15952-PA 1..340 1..339 1166 67 Plus
Dana\GF13939-PA 169 GF13939-PA 1..47 123..169 219 85.1 Plus
Dana\GF23431-PA 115 GF23431-PA 32..102 272..342 215 56.3 Plus
Dana\GF19626-PA 114 GF19626-PA 34..101 275..342 215 58.8 Plus
Dana\GF20168-PA 115 GF20168-PA 35..102 275..342 215 58.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18065-PA 382 GG18065-PA 1..382 1..383 1757 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17716-PA 395 GH17716-PA 1..360 1..323 571 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8010-PA 383 CG8010-PA 1..383 1..383 2009 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15461-PA 388 GI15461-PA 1..153 1..157 559 67.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13723-PA 387 GL13723-PA 1..115 1..117 318 52.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27005-PA 387 GA27005-PA 1..115 1..117 316 52.1 Plus
Dpse\GA23145-PA 335 GA23145-PA 1..115 1..117 280 46.2 Plus
Dpse\GA23128-PA 434 GA23128-PA 1..115 1..117 275 45.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22752-PA 383 GM22752-PA 1..383 1..383 1843 90.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15588-PA 383 GD15588-PA 1..383 1..383 1808 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19174-PA 398 GJ19174-PA 1..239 1..263 570 47.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15536-PA 365 GK15536-PA 1..363 1..347 1060 59 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17401-PA 389 GE17401-PA 1..389 1..383 1625 86.5 Plus