Clone LD24935 Report

Search the DGRC for LD24935

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:249
Well:35
Vector:pOT2
Associated Gene/TranscriptPen-RA
Protein status:LD24935.pep: gold
Sequenced Size:2505

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4799 2002-12-10 Blastp of sequenced clone
CG4799 2003-01-01 Sim4 clustering to Release 3
Pen 2008-04-29 Release 5.5 accounting
Pen 2008-08-15 Release 5.9 accounting
Pen 2008-12-18 5.12 accounting

Clone Sequence Records

LD24935.complete Sequence

2505 bp (2505 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003258

> LD24935.complete
CCAAGCAGGCATTGACTCCAATTTCGCATCGATTACGAGAGTACTGTCTA
CGTTTGTCTACAGTTTCACCGACACATTCAGCGTGCTAACACGCTCGACA
AATTCTCGTGCTCGCGTTTCGTTAGGGAACGATAAAAATTGTGTAAAAAT
TCAGTAAAGTGAATTTCCATTCGAAAAAGCCAGCACACGCATTCAAAAGG
GCAAAGGTACAAAGTTTCACACATTTCATCGCAGCAGCAAACATCTAAAC
TTTTAAAGAAAAAACACAAAACTCAAAAAAAAAAAAAAAAATGAGTAAGG
CGGATTCTAACTCACGACAGGGCTCCTACAAGGCCAACAGCATTAACACG
CAGGACTCACGCATGCGCCGCCATGAGGTGACCATCGAGCTGCGCAAGTC
CAAAAAGGAGGACCAGATGTTCAAGCGGCGCAACATCAACGACGAGGATC
TAACGTCGCCGCTCAAAGAGCTCAATGGCCAGTCGCCGGTGCAGCTGTCC
GTGGACGAGATAGTGGCGGCCATGAACAGCGAGGATCAGGAGCGCCAGTT
TCTGGGCATGCAGTCTGCCCGCAAGATGCTCAGTCGGGAGCGCAATCCAC
CCATCGACCTGATGATCGGCCATGGTATTGTGCCCATTTGCATACGCTTC
CTGCAGAATACCAACAACTCAATGCTGCAGTTCGAGGCCGCTTGGGCGCT
TACCAACATCGCCTCTGGCACATCCGACCAAACGCGCTGCGTTATCGAAC
ACAATGCTGTGCCGCATTTCGTGGCTCTGCTCCAGTCCAAGTCCATGAAC
CTGGCCGAGCAGGCAGTCTGGGCTCTGGGCAACATTGCCGGCGACGGAGC
CGCCGCCCGCGACATTGTCATCCACCACAACGTAATTGACGGAATCTTGC
CACTGATCAACAATGAGACACCGCTCTCTTTTCTGCGCAACATCGTCTGG
CTGATGTCCAACCTGTGCCGGAACAAGAATCCATCGCCGCCATTCGATCA
GGTGAAGCGGCTGTTGCCCGTCCTGTCGCAGCTTCTGCTTAGTCAGGACA
TCCAAGTGCTGGCCGACGCCTGCTGGGCTTTGTCCTACGTCACGGACGAC
GATAACACCAAGATCCAGGCTGTGGTCGACTCGGACGCAGTGCCGCGCCT
GGTCAAACTGCTGCAAATGGACGAGCCGAGCATTATTGTGCCCGCCCTGC
GCAGCGTTGGCAACATTGTGACTGGCACAGATCAACAGACTGACGTTGTA
ATTGCATCTGGAGGTTTACCAAGGCTGGGACTCCTTCTACAGCACAACAA
AAGCAACATTGTGAAGGAGGCTGCCTGGACGGTCAGCAACATCACAGCAG
GTAACCAGAAGCAGATCCAGGCTGTGATTCAGGCCGGCATCTTCCAGCAG
CTGCGCACCGTGCTGGAGAAGGGTGATTTCAAGGCTCAAAAAGAGGCTGC
CTGGGCGGTGACAAACACCACGACATCTGGCACTCCCGAACAGATCGTCG
ATCTAATTGAGAAGTACAAAATATTGAAGCCTTTTATCGATTTGCTGGAC
ACAAAGGATCCGCGTACCATCAAGGTGGTGCAGACGGGCCTATCCAATCT
GTTTGCCCTGGCGGAGAAACTTGGTGGCACCGAGAACCTATGCTTGATGG
TCGAGGAGATGGGCGGTCTAGACAAGCTGGAAACTCTGCAGCAGCACGAG
AACGAGGAGGTCTACAAGAAGGCCTACGCCATCATTGACACATACTTCAG
CAACGGCGACGACGAGGCCGAGCAAGAGCTCGCACCTCAGGAGGTCAACG
GAGCCCTCGAGTTCAATGCCACCCAGCCCAAGGCTCCCGAAGGTGGCTAC
ACGTTCTAATCGCCCACCCCACACATTCCAAACTCCGCTCACACGCCTTA
CAAACAACTACACCTTCGACCGCGCTCACACACTATGCCATTGTCAAACA
TACGCATACTCATCATCACATCTTACAAACATTCCCAAACACTTTGGAGG
TATGCATGGAAACACAGGCGAATGCATTAGCTTAAAGTCATAATTGAATC
GGGTTGGCAAAATCCACTCGCATGAATCCCCATTTAACATACCCGTATTC
CTCGCGTTAGACTAGACTTCACAGATTGCAGCATGGATCTTTCTGGCAGT
GTTCCTCGTTCACGATGCAACCGCTCGGGCAGCTGCGCTGGCTGGGATCC
GTGGATCATAGTATTTCCAGAATCCGTCTGTACAGGGGGCACCTTATGTT
TGCGTGTACTAGGCTTTTTATTGGATACGTTTCGAGCTCATTTCGGATAT
ATTTTAGGCTGTTTAGTATTTATTTATGTATACAGGAAACGCTTTTAATC
CTCCACCTTCGCGCAAGCATTACAACAACAACAACAACAACAACAACTCA
TTCCCTTCACACCAGTGTCCTCATTCCCGAATCGCATGTTTATATTCAAA
GTTGTCAATAAATAATGAATTGTTTGAATGATTAATTAAAAAAAAAAAAA
AAAAA

LD24935.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-RA 2699 Pen-RA 156..2644 1..2490 12410 99.9 Plus
Pen.b 2345 Pen.b 65..2344 210..2490 11365 99.9 Plus
Pen.a 2345 Pen.a 70..2344 215..2490 11340 99.9 Plus
Pen.b 2345 Pen.b 1..145 138..290 620 94.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10057778..10059028 1237..2487 6225 99.8 Plus
chr2L 23010047 chr2L 10057128..10057702 664..1238 2830 99.5 Plus
chr2L 23010047 chr2L 10056755..10057070 352..667 1565 99.7 Plus
chr2L 23010047 chr2L 10055928..10056141 1..214 1055 99.5 Plus
chr2L 23010047 chr2L 10056557..10056696 213..354 610 98.6 Plus
chr3R 27901430 chr3R 5402627..5402681 724..670 200 90.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10058845..10060098 1237..2490 6270 100 Plus
2L 23513712 2L 10058195..10058769 664..1238 2860 99.8 Plus
2L 23513712 2L 10057819..10058134 352..667 1580 100 Plus
2L 23513712 2L 10056991..10057204 1..214 1070 100 Plus
2L 23513712 2L 10057620..10057760 213..354 660 99.3 Plus
3R 32079331 3R 9576784..9576838 724..670 200 90.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10058845..10060098 1237..2490 6270 100 Plus
2L 23513712 2L 10058195..10058769 664..1238 2860 99.8 Plus
2L 23513712 2L 10057819..10058134 352..667 1580 100 Plus
2L 23513712 2L 10056991..10057204 1..214 1070 100 Plus
2L 23513712 2L 10057620..10057760 213..354 670 99.2 Plus
3R 31820162 3R 9317615..9317669 724..670 200 90.9 Minus
Blast to na_te.dros performed on 2019-03-15 15:56:48 has no hits.

LD24935.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:57:38 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10055928..10056141 1..214 99 -> Plus
chr2L 10056559..10056695 215..353 98 -> Plus
chr2L 10056757..10057070 354..667 99 -> Plus
chr2L 10057132..10057702 668..1238 99 -> Plus
chr2L 10057780..10059028 1239..2487 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:53 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1..1569 291..1859 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:56 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1..1569 291..1859 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:46:50 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1..1569 291..1859 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:20 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1..1569 291..1859 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:21:37 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 1..1569 291..1859 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:19:53 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 86..2571 1..2487 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:56 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 86..2571 1..2487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:50 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 92..2577 1..2487 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:20 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 86..2571 1..2487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:21:37 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
Pen-RA 92..2577 1..2487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:38 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10056991..10057204 1..214 100 -> Plus
2L 10057622..10057759 215..353 99 -> Plus
2L 10057821..10058134 354..667 100 -> Plus
2L 10058199..10058769 668..1238 100 -> Plus
2L 10058847..10060095 1239..2487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:38 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10056991..10057204 1..214 100 -> Plus
2L 10057622..10057759 215..353 99 -> Plus
2L 10057821..10058134 354..667 100 -> Plus
2L 10058199..10058769 668..1238 100 -> Plus
2L 10058847..10060095 1239..2487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:38 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10056991..10057204 1..214 100 -> Plus
2L 10057622..10057759 215..353 99 -> Plus
2L 10057821..10058134 354..667 100 -> Plus
2L 10058199..10058769 668..1238 100 -> Plus
2L 10058847..10060095 1239..2487 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:50 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10058199..10058769 668..1238 100 -> Plus
arm_2L 10056991..10057204 1..214 100 -> Plus
arm_2L 10057622..10057759 215..353 99 -> Plus
arm_2L 10057821..10058134 354..667 100 -> Plus
arm_2L 10058847..10060095 1239..2487 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:19 Download gff for LD24935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10056991..10057204 1..214 100 -> Plus
2L 10057622..10057759 215..353 99 -> Plus
2L 10057821..10058134 354..667 100 -> Plus
2L 10058199..10058769 668..1238 100 -> Plus
2L 10058847..10060095 1239..2487 100   Plus

LD24935.hyp Sequence

Translation from 289 to 1858

> LD24935.hyp
MSKADSNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIN
DEDLTSPLKELNGQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRE
RNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRC
VIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVID
GILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLL
SQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIV
PALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSN
ITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPE
QIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENL
CLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQ
EVNGALEFNATQPKAPEGGYTF*

LD24935.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-PA 522 CG4799-PA 1..522 1..522 2654 100 Plus
Kap-alpha3-PD 514 CG9423-PD 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PC 514 CG9423-PC 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PB 514 CG9423-PB 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PA 514 CG9423-PA 1..514 1..522 1089 44.7 Plus

LD24935.pep Sequence

Translation from 290 to 1858

> LD24935.pep
MSKADSNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIN
DEDLTSPLKELNGQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRE
RNPPIDLMIGHGIVPICIRFLQNTNNSMLQFEAAWALTNIASGTSDQTRC
VIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAGDGAAARDIVIHHNVID
GILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVLSQLLL
SQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIV
PALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSN
ITAGNQKQIQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPE
QIVDLIEKYKILKPFIDLLDTKDPRTIKVVQTGLSNLFALAEKLGGTENL
CLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDTYFSNGDDEAEQELAPQ
EVNGALEFNATQPKAPEGGYTF*

LD24935.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15741-PA 522 GF15741-PA 1..522 1..522 2576 96.2 Plus
Dana\GF21735-PA 602 GF21735-PA 1..602 1..522 1194 41.1 Plus
Dana\GF16531-PA 514 GF16531-PA 7..514 8..522 1142 45.3 Plus
Dana\GF23594-PA 547 GF23594-PA 2..547 6..522 1103 42.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10083-PA 522 GG10083-PA 1..522 1..522 2758 98.9 Plus
Dere\GG17355-PA 514 GG17355-PA 7..514 8..522 1111 45 Plus
Dere\GG16059-PA 549 GG16059-PA 2..549 6..522 1075 41.4 Plus
Dere\GG14095-PA 441 GG14095-PA 12..433 63..487 382 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11072-PA 522 GH11072-PA 1..522 1..522 2434 88.5 Plus
Dgri\GH20236-PA 464 GH20236-PA 23..464 74..522 1444 62.8 Plus
Dgri\GH11093-PA 432 GH11093-PA 5..415 62..472 1353 66.5 Plus
Dgri\GH19298-PA 513 GH19298-PA 1..513 1..522 1142 45.3 Plus
Dgri\GH14657-PA 549 GH14657-PA 2..549 6..522 1068 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pen-PA 522 CG4799-PA 1..522 1..522 2654 100 Plus
Kap-alpha3-PD 514 CG9423-PD 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PC 514 CG9423-PC 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PB 514 CG9423-PB 1..514 1..522 1089 44.7 Plus
Kap-alpha3-PA 514 CG9423-PA 1..514 1..522 1089 44.7 Plus
Kap-alpha1-PA 543 CG8548-PA 2..543 6..522 1048 42.2 Plus
alphaKap4-PA 442 CG10478-PA 12..432 63..486 384 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17589-PA 522 GI17589-PA 1..522 1..522 2525 90.4 Plus
Dmoj\GI23514-PA 513 GI23514-PA 1..513 1..522 1148 45.3 Plus
Dmoj\GI11643-PA 542 GI11643-PA 2..542 6..522 1084 42.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18958-PA 522 GL18958-PA 1..522 1..522 2568 96 Plus
Dper\GL21493-PA 514 GL21493-PA 7..514 8..522 1150 45.8 Plus
Dper\GL15735-PA 548 GL15735-PA 2..548 6..522 1067 41.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18440-PA 522 GA18440-PA 1..522 1..522 2559 95.8 Plus
Dpse\GA21775-PB 514 GA21775-PB 7..514 8..522 1150 45.8 Plus
Dpse\GA21775-PA 514 GA21775-PA 7..514 8..522 1150 45.8 Plus
Dpse\GA21156-PA 548 GA21156-PA 2..548 6..522 1067 41.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17916-PA 522 GM17916-PA 1..522 1..522 2763 99 Plus
Dsec\GM19652-PA 543 GM19652-PA 2..543 6..522 1088 42.6 Plus
Dsec\GM26241-PA 514 GM26241-PA 1..514 1..522 1087 44.2 Plus
Dsec\GM13879-PA 442 GM13879-PA 45..432 95..486 328 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23655-PA 524 GD23655-PA 1..524 1..522 2730 98.3 Plus
Dsim\GD14829-PA 543 GD14829-PA 2..543 6..522 1087 42.6 Plus
Dsim\GD20781-PA 501 GD20781-PA 1..501 1..522 931 40.6 Plus
Dsim\GD17931-PA 171 GD17931-PA 3..170 202..369 414 47 Plus
Dsim\GD13162-PA 447 GD13162-PA 45..432 95..486 324 26.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17933-PA 521 GJ17933-PA 1..521 1..522 2516 92 Plus
Dvir\GJ14921-PA 470 GJ14921-PA 1..470 1..522 2213 83.5 Plus
Dvir\GJ10266-PA 513 GJ10266-PA 1..513 1..522 1131 44.9 Plus
Dvir\GJ11324-PA 556 GJ11324-PA 2..556 6..522 1065 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18399-PA 522 GK18399-PA 1..522 1..522 2401 90.2 Plus
Dwil\GK23224-PA 491 GK23224-PA 6..470 19..486 1339 57.5 Plus
Dwil\GK14517-PA 514 GK14517-PA 1..514 1..522 1145 45.4 Plus
Dwil\GK17499-PA 565 GK17499-PA 120..565 73..522 1019 44.8 Plus
Dwil\GK22920-PA 451 GK22920-PA 16..446 27..490 935 43.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18896-PA 522 GE18896-PA 1..522 1..522 2631 95.6 Plus
Dyak\GE24760-PA 514 GE24760-PA 7..514 8..522 1124 45.6 Plus
Dyak\GE19625-PA 549 GE19625-PA 2..549 6..522 1086 42.3 Plus
Dyak\GE20518-PA 433 GE20518-PA 12..433 63..488 396 26 Plus