Clone LD24944 Report

Search the DGRC for LD24944

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:249
Well:44
Vector:pOT2
Associated Gene/Transcriptosk-RC
Protein status:LD24944.pep: gold
Preliminary Size:2200
Sequenced Size:2261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10901 2001-01-01 Release 2 assignment
CG10901 2001-09-19 Blastp of sequenced clone
osk 2008-04-29 Release 5.5 accounting
osk 2008-04-29 Picked prior to 5.5
osk 2008-08-15 Release 5.9 accounting
osk 2008-12-18 5.12 accounting

Clone Sequence Records

LD24944.complete Sequence

2261 bp (2261 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058560

> LD24944.complete
CCGCAGTCACAAGTGAATTCCCCAGCAAACCGATCAGTTATACCAGCACC
AATACTTCCGCCAAAACCTATTATCTTAAGTCCGTGAAAAAGCGGGTGAC
CACGTGTTTCCAGCAGTTGCGCGATAAACTCCAGTCATCCGGTTCCTTTC
GCAAGAGTTCCTCCAGCTGCCTCAACCAGATCTTCGTAAGGTCCGATTTC
TCCGCATGCGGCGAACGCTTTCGGAAGATCTTCAAATCGGCGCGAAAAAC
CGAATTGCCGGAGTTGTGGAAGGTGCCATTGGTGGCCCATGAACTCACCA
GCCGGCAGAGCAGCCAGCAGTTGCAAGTCGTAGCCAGACTCTTCTCGTCC
ACTCAGATTTCCACCAAGGAAATCACCTACAACAGCAACAGCAACACCAG
CGAGAACAACATGACCATCATCGAGAGCAACTATATATCCGTGCGCGAGG
AATATCCCGATATAGATAGTGAGGTGCGCGCCATATTGCTGAGCCACGCC
CAGAATGGAATCACGATATCGAGCATCAAGAGTGAATATCGAAAACTGAC
GGGCAATCCATTTCCACTGCACGACAACGTGACGGATTTCCTGCTGACCA
TTCCCAATGTGACCGCTGAGTGCAGCGAGTCCGGTAAGCGGATCTTCAAC
CTGAAAGCGAGCCTGAAGAACGGTCACCTCCTGGATATGGTGCTCAACCA
GAAAGAGCGCACCAGCGACTACAGCAGCGGAGCTCCGTCCCTGGAGAACA
TACCACGAGCACCTCCACGCTACTGGAAGAATCCCTTCAAACGGAGGGCT
CTGTCCCAGCTGAACACCAGCCCGAGGACCGTGCCCAAGATAACGGATGA
AAAGACCAAGGATATCGCCACCAGGCCGGTTTCGCTGCATCAAATGGCCA
ATGAGGCAGCGGAGTCGAACTGGTGCTACCAGGATAATTGGAAGCATCTC
AACAATTTCTACCAGCAAGCCAGCGTAAATGCGCCAAAAATGCCAGTACC
CATCAACATCTACAGCCCCGATGCCCCAGAGGAACCAATCAATTTGGCTC
CACCTGGGCATCAGCCAAGCTGCAGAACCCAAAGCCAGAAAACCGAACCG
ACTGAAAACCGCCATTTGGGCATCTTTGTGCATCCATTTAACGGCATGAA
CATAATGAAGAGACGCCACGAAATGACGCCCACGCCAACGATTTTAACCA
GTGGAACCTACAACGATTCTCTGCTGACGATTAACTCGGATTACGATGCC
TATCTGCTGGACTTTCCGCTTATGGGCGATGATTTTATGCTATATCTCGC
CCGAATGGAGCTAAAATGCCGATTTAGGCGTCACGAACGCGTCCTGCAGT
CAGGACTTTGTGTATCCGGACTGACGATCAATGGCGCCCGAAATCGTTTA
AAAAGAGTCCAATTACCCGAGGGTACTCAGATCATCGTCAATATCGGATC
GGTGGACATTATGCGCGGCAAGCCTTTGGTTCAGATCGAGCACGATTTTC
GGCTACTGATCAAGGAGATGCACAATATGCGATTGGTGCCGATTCTAACA
AATCTTGCACCGCTGGGCAACTATTGTCACGATAAGGTATTATGTGACAA
AATCTACCGATTCAACAAGTTTATCCGAAGCGAATGCTGTCACCTAAAGG
TCATCGACATACACTCCTGTCTAATCAACGAAAGGGGCGTGGTGCGATTT
GATTGCTTTCAGGCCTCACCACGCCAAGTCACCGGTTCCAAGGAACCCTA
TCTGTTCTGGAACAAAATCGGTCGGCAGCGCGTACTGCAAGTTATTGAAA
CGAGTCTGGAGTATTAAGTTGGGTTCTTAATCAAGATACATATATGCAAA
TTTTGACTGGGCTGGCACCGGAACCGACAAAATCAACGCCGCGGCTGATT
TATTATTGATGTGCTCAAGCAAATTCAAGTGAAGCATTTGCGCGATTTTC
GTCTTTCTGTTTCCGTTTGCAAAAAAGTTTATAAAATGCTTACACTCTGC
TGCAGACACGCCAACCGGAAGTGCGCACTAAGCGCTTGTTTGTAGCACAG
TGTAGAATTCTGGCGTAATTTACAGCTCTACTTTAAAGTCTTCTAGATAG
CTATCTACTATTTATAAACTTATTTATTGTCTTGAATGTATGTTAATTGT
ATGTATTGATGGTGATCACGTTTTTTTTGTCCTATAACAAGCTGCAATGT
AAAATCCAAAAAAAAAATGAAAAAATAAAATAAAAGGGAAATCAAAAAAA
AAAAAAAAAAA

LD24944.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
osk.a 3047 osk.a 197..2079 1..1883 9415 100 Plus
osk-RC 3047 osk-RC 197..2079 1..1883 9415 100 Plus
osk-RA 3047 osk-RA 197..2079 1..1883 9415 100 Plus
osk.a 3047 osk.a 2681..3047 1877..2243 1835 100 Plus
osk-RC 3047 osk-RC 2681..3047 1877..2243 1835 100 Plus
osk-RA 3047 osk-RA 2681..3047 1877..2243 1835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4762370..4763134 950..1714 3810 99.9 Plus
chr3R 27901430 chr3R 4761083..4761617 1..535 2660 99.8 Plus
chr3R 27901430 chr3R 4761857..4762274 532..949 2075 99.8 Plus
chr3R 27901430 chr3R 4763963..4764329 1877..2243 1835 100 Plus
chr3R 27901430 chr3R 4763193..4763361 1715..1883 845 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:16:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8936442..8937206 950..1714 3825 100 Plus
3R 32079331 3R 8935150..8935684 1..535 2675 100 Plus
3R 32079331 3R 8935929..8936346 532..949 2090 100 Plus
3R 32079331 3R 8938035..8938403 1877..2245 1845 100 Plus
3R 32079331 3R 8937265..8937433 1715..1883 845 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8677273..8678037 950..1714 3825 100 Plus
3R 31820162 3R 8675981..8676515 1..535 2675 100 Plus
3R 31820162 3R 8676760..8677177 532..949 2090 100 Plus
3R 31820162 3R 8678866..8679234 1877..2245 1845 100 Plus
3R 31820162 3R 8678096..8678264 1715..1883 845 100 Plus
Blast to na_te.dros performed 2019-03-15 18:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2435 362..436 159 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6809 362..431 143 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6837..6897 372..435 142 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2453 362..436 141 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2528..2649 314..431 141 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6706..6788 347..431 141 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2382 362..431 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2409 362..431 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2449 362..435 134 67.5 Plus
BS 5142 BS BS 5142bp 5036..5138 2137..2241 132 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6829 362..430 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6851 362..431 125 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6860..6920 362..422 125 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2376 372..431 120 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1119..1163 372..416 117 73.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7952..7983 371..402 115 84.4 Plus
TART-C 11124 TART-C TARTC 11124bp 9396..9427 371..402 115 84.4 Plus

LD24944.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:27:37 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4761083..4761613 1..531 99 -> Plus
chr3R 4761857..4762274 532..949 99 -> Plus
chr3R 4762370..4763134 950..1714 99 -> Plus
chr3R 4763193..4763359 1715..1881 100 -> Plus
chr3R 4763968..4764329 1882..2243 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:03:55 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 5..1821 1..1817 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:02 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 5..1821 1..1817 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:57 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 5..1821 1..1817 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:36 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 5..1821 1..1817 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:14 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 5..1821 1..1817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:33 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 20..1896 1..1877 100 <- Plus
osk-RA 2506..2870 1878..2243 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:02 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 20..1896 1..1877 100 <- Plus
osk-RA 2506..2870 1878..2243 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:57 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RC 25..1901 1..1877 100 <- Plus
osk-RC 2511..2869 1878..2237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:37 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RA 20..1896 1..1877 100 <- Plus
osk-RA 2506..2870 1878..2243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:14 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
osk-RC 25..1901 1..1877 100 <- Plus
osk-RC 2511..2869 1878..2237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:37 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8935150..8935680 1..531 100 -> Plus
3R 8935929..8936346 532..949 100 -> Plus
3R 8936442..8937206 950..1714 100 -> Plus
3R 8937265..8937431 1715..1881 100 -> Plus
3R 8938040..8938401 1882..2243 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:37 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8935150..8935680 1..531 100 -> Plus
3R 8935929..8936346 532..949 100 -> Plus
3R 8936442..8937206 950..1714 100 -> Plus
3R 8937265..8937431 1715..1881 100 -> Plus
3R 8938040..8938401 1882..2243 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:27:37 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8935150..8935680 1..531 100 -> Plus
3R 8935929..8936346 532..949 100 -> Plus
3R 8936442..8937206 950..1714 100 -> Plus
3R 8937265..8937431 1715..1881 100 -> Plus
3R 8938040..8938401 1882..2243 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:57 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4760872..4761402 1..531 100 -> Plus
arm_3R 4761651..4762068 532..949 100 -> Plus
arm_3R 4762164..4762928 950..1714 100 -> Plus
arm_3R 4762987..4763153 1715..1881 100 -> Plus
arm_3R 4763762..4764123 1882..2243 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:25 Download gff for LD24944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678096..8678262 1715..1881 100 -> Plus
3R 8678871..8679232 1882..2243 100   Plus
3R 8675981..8676511 1..531 100 -> Plus
3R 8676760..8677177 532..949 100 -> Plus
3R 8677273..8678037 950..1714 100 -> Plus

LD24944.pep Sequence

Translation from 2 to 1816

> LD24944.pep
AVTSEFPSKPISYTSTNTSAKTYYLKSVKKRVTTCFQQLRDKLQSSGSFR
KSSSSCLNQIFVRSDFSACGERFRKIFKSARKTELPELWKVPLVAHELTS
RQSSQQLQVVARLFSSTQISTKEITYNSNSNTSENNMTIIESNYISVREE
YPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFLLTI
PNVTAECSESGKRIFNLKASLKNGHLLDMVLNQKERTSDYSSGAPSLENI
PRAPPRYWKNPFKRRALSQLNTSPRTVPKITDEKTKDIATRPVSLHQMAN
EAAESNWCYQDNWKHLNNFYQQASVNAPKMPVPINIYSPDAPEEPINLAP
PGHQPSCRTQSQKTEPTENRHLGIFVHPFNGMNIMKRRHEMTPTPTILTS
GTYNDSLLTINSDYDAYLLDFPLMGDDFMLYLARMELKCRFRRHERVLQS
GLCVSGLTINGARNRLKRVQLPEGTQIIVNIGSVDIMRGKPLVQIEHDFR
LLIKEMHNMRLVPILTNLAPLGNYCHDKVLCDKIYRFNKFIRSECCHLKV
IDIHSCLINERGVVRFDCFQASPRQVTGSKEPYLFWNKIGRQRVLQVIET
SLEY*

LD24944.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17692-PA 602 GF17692-PA 3..602 1..604 1784 60.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13545-PA 625 GG13545-PA 3..625 1..604 2778 85.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23955-PA 600 GH23955-PA 378..596 386..604 921 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
osk-PA 606 CG10901-PA 3..606 1..604 3165 100 Plus
osk-PC 468 CG10901-PC 1..468 137..604 2483 100 Plus
osk-PD 254 CG10901-PD 1..254 330..604 1318 92.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10055-PA 600 GI10055-PA 6..600 4..604 1416 50.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21554-PA 619 GL21554-PA 28..619 25..604 1521 53.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10627-PA 619 GA10627-PA 28..619 25..604 1520 53.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23770-PA 610 GM23770-PA 3..610 1..604 3040 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18580-PA 611 GD18580-PA 3..611 1..604 2950 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\osk-PA 595 GJ23790-PA 6..594 4..604 1457 51.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11117-PA 357 GK11117-PA 137..357 386..604 886 72.4 Plus
Dwil\GK11116-PA 358 GK11116-PA 6..318 4..320 575 41.6 Plus
Dwil\GK11117-PA 357 GK11117-PA 1..136 435..570 553 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25914-PA 625 GE25914-PA 3..625 1..604 2836 85.9 Plus

LD24944.hyp Sequence

Translation from 2 to 1816

> LD24944.hyp
AVTSEFPSKPISYTSTNTSAKTYYLKSVKKRVTTCFQQLRDKLQSSGSFR
KSSSSCLNQIFVRSDFSACGERFRKIFKSARKTELPELWKVPLVAHELTS
RQSSQQLQVVARLFSSTQISTKEITYNSNSNTSENNMTIIESNYISVREE
YPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFLLTI
PNVTAECSESGKRIFNLKASLKNGHLLDMVLNQKERTSDYSSGAPSLENI
PRAPPRYWKNPFKRRALSQLNTSPRTVPKITDEKTKDIATRPVSLHQMAN
EAAESNWCYQDNWKHLNNFYQQASVNAPKMPVPINIYSPDAPEEPINLAP
PGHQPSCRTQSQKTEPTENRHLGIFVHPFNGMNIMKRRHEMTPTPTILTS
GTYNDSLLTINSDYDAYLLDFPLMGDDFMLYLARMELKCRFRRHERVLQS
GLCVSGLTINGARNRLKRVQLPEGTQIIVNIGSVDIMRGKPLVQIEHDFR
LLIKEMHNMRLVPILTNLAPLGNYCHDKVLCDKIYRFNKFIRSECCHLKV
IDIHSCLINERGVVRFDCFQASPRQVTGSKEPYLFWNKIGRQRVLQVIET
SLEY*

LD24944.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
osk-PA 606 CG10901-PA 3..606 1..604 3165 100 Plus
osk-PC 468 CG10901-PC 1..468 137..604 2483 100 Plus