Clone LD25005 Report

Search the DGRC for LD25005

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:250
Well:5
Vector:pOT2
Associated Gene/TranscriptCTPsyn-RA
Protein status:LD25005.pep: gold
Preliminary Size:2426
Sequenced Size:2397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6854 2002-12-10 Blastp of sequenced clone
CG6854 2008-04-29 Release 5.5 accounting
CG6854 2008-08-15 Release 5.9 accounting
CG6854 2008-12-18 5.12 accounting

Clone Sequence Records

LD25005.complete Sequence

2397 bp (2397 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003255

> LD25005.complete
GTGGTCATACCATAAATACGTATGAGATATTAAACGAATCCAATTTCTAA
AACCACGTGCAGCAAAGGCAAATAAACAATAAATTGTGGCTCGGATTGCC
TCAGATTGAGTGTCCACCGCGAATTGAACCGATAACACGATAATCCTCCA
CATTTGGTGATCCCAAAGATTGACATTCGAGACGAAAGGATGAAATACAT
CCTGGTAACTGGTGGCGTCATTAGTGGCGTGGGAAAAGGAGTGATTGCCT
CCTCGTTCGGAACGCTTTTGAAATCCTGTGGTCTGGATGTAACCTCGATC
AAGATTGACCCCTATATCAATATAGATGCTGGAACCTTTTCGCCTTATGA
GCATGGCGAGGTTTACGTTTTGGACGATGGCGCCGAGGTGGATCTGGATC
TGGGAAACTATGAACGGTTTTTGGATGTTACCCTGCATCGGGACAACAAC
ATAACCACCGGAAAAATTTACAAGTTGGTCATTGAGAAGGAGCGCACTGG
CGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCACACATCACTGATGCCA
TTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCCGTTCAGGGATCTTCA
AAGCCACAGGTGTGCATCGTGGAATTGGGAGGAACGATTGGTGACATCGA
AGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTCAGTTCCGCGTAAAGA
GAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTTCCGTTGCCAAAGGCT
ACCGGAGAACCCAAGACCAAGCCCACACAAAGTTCGGTCAGAGAACTGAG
AGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCCGATCGGAGAAACCCA
TTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTTTGTCATGTGGGGCCG
GATCAGGTGATATGCATCCACGATTTGAACTCCATTTATCATGTTCCGCT
GCTGATGGAGCAGAATGGTGTTATTGAATACCTAAATGAGCGCCTACAGC
TTAATATCGACATGAGCAAGAGGACCAAATGCTTGCAGCAATGGCGAGAT
TTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGTTTGCATCGCCGTCGT
GGGAAAGTACACCAAGTTCACGGATTCGTACGCCTCCGTAGTTAAAGCCC
TGCAACATGCCGCCCTGGCAGTGAATCGCAAACTGGAACTGGTCTTTATC
GAGTCGTGCCTGCTGGAGGAGGAAACTTTGCATTCTGAGCCGAGCAAGTA
CCACAAGGAGTGGCAGAAGCTATGCGATAGCCATGGCATCCTAGTCCCCG
GTGGATTCGGTTCCCGTGGAATGGAGGGCAAGATTCGTGCATGCCAATGG
GCGCGAGAGAATCAAAAGCCATTGCTTGGCATCTGCTTGGGTCTGCAAGC
GGCGGTCATTGAATTCGCACGAAATAAACTTGGTCTCAAGGATGCAAACA
CCACAGAAATCGATCCGAACACAGCTAATGCCTTGGTCATCGATATGCCA
GAGCATCACACGGGTCAATTGGGCGGCACTATGCGCTTGGGCAAGCGAAT
AACTGTTTTCTCTGATGGTCCTAGTGTCATTCGCCAGTTGTATGGCAATC
CGAAAAGCGTGCAGGAGCGTCATCGGCATCGTTACGAGGTTAATCCCAAA
TACGTGCATCTGCTGGAAGAGCAAGGCATGCGATTTGTGGGCACCGACGT
CGACAAAACTAGGATGGAAATCATTGAGCTCAGCGGTCATCCCTACTTTG
TTGCCACCCAATATCATCCAGAGTACTTGTCGCGGCCTCTGAAGCCGTCG
CCTCCTTTCCTCGGCCTGATCCTGGCCTCAGTGGATCGATTGAACCAATA
TATTCAGCGCGGTTGCCGCCTGTCGCCCCGCCAGCTATCCGACGCATCCT
CGGATGAGGAGGACAGTGTTGTGGGCTTGGCCGGAGCAACAAAATCGCTG
AGCTCCTTGAAAATTCCCATTACACCCACAAATGGAATATCAAAAAGTTG
CAATGGTAGCATAAGCACTTCCGACAGCGAAGGTGCCTGCGGAGGCGTTG
ATCCTACCAATGGCCATAAGTAAACTAGTGAACGGTATCTTATATCCTAA
AGTGTTTAACATCCGATTATCAGACGTACTTTTGTTATCGCAAAACCCCA
AAAGTTTGGGATAACTTAAGTATTACTGGGTGGGTATAATACGGTATTTG
CGAATTGAAAATTTTGACCTTTTATGAAAGAGGCATTAATAATAAGAAAC
CCTTTATAATTTCTCCTAAGCTTAAGTAAACTACGATGTTACTTTCCGTA
CATTTTTAATTTATATGAAAATCTTAATTCATATATATTTTTTGGATGCG
AAAAAAAAAATAACTAATGGAACAATTTCAAAAAAAAAAAAAAAAAA

LD25005.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-RC 2627 CG6854-RC 249..2627 1..2379 11895 100 Plus
CG6854.d 2093 CG6854.d 70..2093 356..2379 10120 100 Plus
CG6854-RB 2421 CG6854-RB 398..2421 356..2379 10120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15101736..15103085 1029..2379 6630 99.6 Plus
chr3L 24539361 chr3L 15101168..15101671 525..1028 2490 99.6 Plus
chr3L 24539361 chr3L 15088229..15088592 1..364 1790 99.5 Plus
chr3L 24539361 chr3L 15100898..15101069 355..526 860 100 Plus
chr3L 24539361 chr3L 15092315..15092549 2112..2347 690 87.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111653..15113006 1029..2382 6770 100 Plus
3L 28110227 3L 15111085..15111588 525..1028 2520 100 Plus
3L 28110227 3L 15098162..15098525 1..364 1790 99.5 Plus
3L 28110227 3L 15110815..15110986 355..526 860 100 Plus
3L 28110227 3L 15102254..15102488 2112..2347 690 87.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15104753..15106106 1029..2382 6770 100 Plus
3L 28103327 3L 15104185..15104688 525..1028 2520 100 Plus
3L 28103327 3L 15091262..15091625 1..364 1790 99.4 Plus
3L 28103327 3L 15103915..15104086 355..526 860 100 Plus
3L 28103327 3L 15095419..15095588 2181..2347 555 89.4 Plus
3L 28103327 3L 15095354..15095423 2112..2181 245 90 Plus
Blast to na_te.dros performed on 2019-03-16 21:51:27 has no hits.

LD25005.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:22 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15088229..15088583 1..355 100 -> Plus
chr3L 15100899..15101069 356..526 100 -> Plus
chr3L 15101170..15101671 527..1028 99 -> Plus
chr3L 15101736..15103085 1029..2379 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:25:38 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 1..1884 190..2073 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:39 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 1..1884 190..2073 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:49 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 1..1884 190..2073 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:05 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 1..1884 190..2073 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:16 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 1..1884 190..2073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:25:36 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 26..2380 1..2355 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:39 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 26..2380 1..2355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:49 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 28..2406 1..2379 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:06 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RC 26..2380 1..2355 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:16 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 28..2406 1..2379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:22 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15098162..15098516 1..355 100 -> Plus
3L 15110816..15110986 356..526 100 -> Plus
3L 15111087..15111588 527..1028 100 -> Plus
3L 15111653..15113003 1029..2379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:22 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15098162..15098516 1..355 100 -> Plus
3L 15110816..15110986 356..526 100 -> Plus
3L 15111087..15111588 527..1028 100 -> Plus
3L 15111653..15113003 1029..2379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:22 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15098162..15098516 1..355 100 -> Plus
3L 15110816..15110986 356..526 100 -> Plus
3L 15111087..15111588 527..1028 100 -> Plus
3L 15111653..15113003 1029..2379 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:49 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15103916..15104086 356..526 100 -> Plus
arm_3L 15091262..15091616 1..355 100 -> Plus
arm_3L 15104187..15104688 527..1028 100 -> Plus
arm_3L 15104753..15106103 1029..2379 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:01 Download gff for LD25005.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15091262..15091616 1..355 100 -> Plus
3L 15103916..15104086 356..526 100 -> Plus
3L 15104187..15104688 527..1028 100 -> Plus
3L 15104753..15106103 1029..2379 100   Plus

LD25005.pep Sequence

Translation from 189 to 2072

> LD25005.pep
MKYILVTGGVISGVGKGVIASSFGTLLKSCGLDVTSIKIDPYINIDAGTF
SPYEHGEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEK
ERTGEYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTI
GDIEGMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSV
RELRGCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIY
HVPLLMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVC
IAVVGKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSE
PSKYHKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICL
GLQAAVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRL
GKRITVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFV
GTDVDKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDR
LNQYIQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGI
SKSCNGSISTSDSEGACGGVDPTNGHK*

LD25005.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23684-PA 1010 GF23684-PA 440..1010 57..627 2863 92.5 Plus
Dana\GF23683-PA 66 GF23683-PA 1..55 1..55 288 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15718-PA 580 GG15718-PA 12..580 56..624 2862 93.7 Plus
Dere\GG15716-PA 64 GG15716-PA 1..63 1..63 305 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14829-PA 678 GH14829-PA 83..676 45..620 2385 75.9 Plus
Dgri\GH14828-PA 64 GH14828-PA 1..55 1..55 278 98.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PC 627 CG45070-PC 1..627 1..627 3279 100 Plus
CTPsyn-PA 627 CG45070-PA 1..627 1..627 3279 100 Plus
CTPsyn-PB 623 CG45070-PB 53..623 57..627 2991 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13933-PA 689 GI13933-PA 83..685 45..619 2475 77.6 Plus
Dmoj\GI13932-PA 63 GI13932-PA 1..60 1..60 291 88.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24720-PA 928 GL24720-PA 328..921 44..626 2721 87.3 Plus
Dper\GL24719-PA 61 GL24719-PA 1..56 1..56 288 98.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23623-PA 690 GA23623-PA 83..683 45..626 2711 86.8 Plus
Dpse\GA23622-PA 61 GA23622-PA 1..56 1..56 288 98.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25505-PA 585 GM25505-PA 5..584 57..626 2903 94.1 Plus
Dsec\GM25503-PA 56 GM25503-PA 1..55 1..55 290 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14523-PA 1013 GD14523-PA 433..1012 57..626 2917 94.3 Plus
Dsim\GD14522-PA 56 GD14522-PA 1..55 1..55 290 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13723-PA 665 GJ13723-PA 83..663 45..620 2505 80.7 Plus
Dvir\GJ13722-PA 59 GJ13722-PA 1..56 1..56 292 98.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17769-PA 738 GK17769-PA 164..730 56..625 2639 87.1 Plus
Dwil\GK17769-PA 738 GK17769-PA 1..55 1..55 278 98.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22049-PA 583 GE22049-PA 12..582 56..626 2936 96.1 Plus
Dyak\GE22047-PA 56 GE22047-PA 1..55 1..55 291 100 Plus

LD25005.hyp Sequence

Translation from 189 to 2072

> LD25005.hyp
MKYILVTGGVISGVGKGVIASSFGTLLKSCGLDVTSIKIDPYINIDAGTF
SPYEHGEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEK
ERTGEYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTI
GDIEGMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSV
RELRGCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIY
HVPLLMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVC
IAVVGKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSE
PSKYHKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICL
GLQAAVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRL
GKRITVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFV
GTDVDKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDR
LNQYIQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGI
SKSCNGSISTSDSEGACGGVDPTNGHK*

LD25005.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PC 627 CG45070-PC 1..627 1..627 3279 100 Plus
CTPsyn-PA 627 CG45070-PA 1..627 1..627 3279 100 Plus
CTPsyn-PB 623 CG45070-PB 53..623 57..627 2991 100 Plus