BDGP Sequence Production Resources |
Search the DGRC for LD25083
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 250 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | Cdc6-RA |
Protein status: | LD25083.pep: gold |
Preliminary Size: | 2367 |
Sequenced Size: | 2482 |
Gene | Date | Evidence |
---|---|---|
CG5971 | 2001-01-01 | Release 2 assignment |
CG5971 | 2001-07-04 | Blastp of sequenced clone |
CG5971 | 2003-01-01 | Sim4 clustering to Release 3 |
Cdc6 | 2008-04-29 | Release 5.5 accounting |
Cdc6 | 2008-08-15 | Release 5.9 accounting |
Cdc6 | 2008-12-18 | 5.12 accounting |
2482 bp (2482 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051722
> LD25083.complete ACTGTGACTGCCAGCTGAAAATTGTAACGCACGCTGTGGCTTATTTAACT CGTATTTAATAGTAACTAACTGCTGATCAATAAACTAAGCTAAAGAATGG CTGCCGTACGCCGCTCCACGCGCCTTAGTAGCATCAGCAAAGCGACCGCC GCCTCTCCGCTGCCGCCGTCGACGCAGACGCCGCGTCGCTCGGAAGTTTG GAAACGCAGGCAGCCGAAAAAAGTGCTTGCCGATAGCGACGAGGAGGAGG AGGTGGTGACGGCGATCTATGACCTGACCAGCCCCGTTTCAGAGAACAAC GAGAACCGCAACGTGCTCAACAAAATGGACAAGATCTCCAGGCGCAGGAC ATCGCAAGTGCAGGTGGCTCAATCGGAGCTGCCAAAGACGCCACGCAGCA CAAAGAAAACAGTCCAATCAGCTGGCAGTTCACGGGCCAAACGTGAGGAG GAAAACCGTGAGGCCACCGCTAGATTCTTGGAGGGCGAACAGGATTCGGA GGTGGACCCGCTTCATGGATCGCCGCCGAAGCAGAGGAAGTTGCAGCCAC TGCCACAGCACCTGATCAGTCCTTCGCGGCTGCTGGACAGACTCAGCATC GACGAGCGCCAGGAGGAAGAGGTGGAGGCGACCACACACAAGACTGAAAC GGCTGAGCAGCAGCCGAAACATCAAGCCAAGGACGAGGCAAAGCCTCGGC CAAAACAGCAGGAGGATCCATTAGCGCAAAAGCAGCAGGAGAAACCTCCA ACAAAGCAGCCGAATAAAAACCAAACTAAAGAAAAAAGCAATATCCAAAC CAATGAGGAAACCCAACAGAATAACCTGCCATCTCCCTCACGCAACAAAT ACCAAAACGCCAGACGAGTGCTCAACAGCGCCGAGACACAAAACTTGCCA GGACGTGAGTCCCAGCTCCAAGAGCTACGTGAATTCTTCAGCAATCACCT GGAAAGCCAGACTTCCGGCAGCCTCTATGTCTCCGGTCAGCCAGGAACAG GCAAGACCGCCTGCCTATCGCTACTGCTGAGAGATCCCGACTTCTCCAAG CGTCTGCAACGTGTGTACATTAACTGCACCAGCATAGCAAGTGTAGGAGC AGTTTACAAGAAACTATGCACCGAACTGCAGCTCAAAGTCAGCGGTCGCA CAGAGAGAGATCACTTGGAGGCCATTCAGCGTCACCTAAAGACAGCAAAG CGAATGCTTCTGCTGGTGCTGGACGAGATTGATCAGCTCTGCACCAGCAG GCAGGAGGTGTTGTACACGATCTTCGAGTGGCCAGCTCTTCCCGGCTCCA GGATACTGCTCGTGGGCATTGCCAATAGTTTGGATCTCACAGATCGTGCG CTGATGCGACTGAATGCAAGGTGCGAGCTGAAGCCCAGACTGATGCACTT CCCGCCCTACTCCAAGCAGCAGATCGTGGAGATATTCAAGTCGCGTCTGG CTGAGGCGGAAGTGCTGGACGTCTTTCCACCCGTGACCCTGCAGCTGCTG GCCGCCAAGGTGAGTGCGATCAGTGGAGATGTGCGAAGGGCCCTGGACAT TGGACGACGAGTGGTCGAGATAGCAGAGCAGCAGAAGCGCGATGGCGAAA AGGAGTTCAATATGAAGGCCCTGCAGCTGGAGGGCAAGGATGCGGTGGAG GCCAAGGAAAAGCAAGACACTCTAAAGCCTGTTCAGGTCACCCAAGTGGC TGCAGTGCTGAACAAGGTCTACGGTGCCTCACAGAATCTGGAGGAGGACA TCGAGGCATCATTTCCGCTGCAGCAAAAGCTAATGCTGTGCACCCTGGTG CTGATGCTGCGCAACGAGCGCAACAAAGACATCAGTATGGGTCGCCTGCA CGAGGTCTACAGGAGAGTGTGCGCCAAACGCAACATCCTGGCCCTGGACC AAGCGGAGTTCACTGGGACTGTGGATCTGGTCGAGACCCGAGGCATTCTG CGAATCATGCGCAAAAAGGAGCCGCGCCTGCACAAGGTTCTGCTGCAGTG GGACGAGGAGGAGGTGCATGCGGCACTGAGCGACAAGCAGCTGATCGCCT CGATCCTCAGCGATACCGCCTGCCTGAGCAAGTGACGATCTGGACGATTA CCTCTAGGAAATGAGTGTGCCCGACAAACCGCTGGTTAATTGCGCATTTT TCTCATTTTCATTCACCTTGGGGACGAACGTATATGTATAGGAATACTTT TTGACGCTAATTTTAAAATTCGTGGCTGGCGCAAGCACTGAAATATTTTG AAATATCATTTGACGGTCACTTTCGACATTTTCTGCTATTTTCTGACTAT TAATTGAATCGATTCTTTTAGACTTTGTGTGTGTCATAAATCTAAGTAAA TGTTGCGCCCATAATCTATTTCTAATCCGATCCGTTGACCAATAAGTTAT AGAGAATCCCCTTCCTGTTAGCCCTAAGCAAATAAGAATAAACTAGATAG TTCCGCAATAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cdc6-RA | 2631 | Cdc6-RA | 45..2511 | 1..2467 | 12305 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8623540..8624332 | 1667..2459 | 98 | <- | Minus |
chr3L | 8624411..8626076 | 1..1666 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 1..1989 | 97..2085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 1..1989 | 97..2085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 1..1989 | 97..2085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 1..1989 | 97..2085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 1..1989 | 97..2085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 37..2495 | 1..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 37..2495 | 1..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 25..2483 | 1..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 37..2495 | 1..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cdc6-RA | 25..2483 | 1..2459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8631509..8632301 | 1667..2459 | 100 | <- | Minus |
3L | 8632380..8634045 | 1..1666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8631509..8632301 | 1667..2459 | 100 | <- | Minus |
3L | 8632380..8634045 | 1..1666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8631509..8632301 | 1667..2459 | 100 | <- | Minus |
3L | 8632380..8634045 | 1..1666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8624609..8625401 | 1667..2459 | 100 | <- | Minus |
arm_3L | 8625480..8627145 | 1..1666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8624609..8625401 | 1667..2459 | 100 | <- | Minus |
3L | 8625480..8627145 | 1..1666 | 100 | Minus |
Translation from 96 to 2084
> LD25083.pep MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI ASILSDTACLSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10154-PA | 638 | GF10154-PA | 1..638 | 1..662 | 2443 | 74.5 | Plus |
Dana\GF13670-PA | 915 | GF13670-PA | 537..787 | 248..494 | 337 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15067-PA | 667 | GG15067-PA | 1..667 | 1..662 | 3167 | 92.4 | Plus |
Dere\GG10735-PA | 913 | GG10735-PA | 527..787 | 240..494 | 352 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22514-PA | 613 | GH22514-PA | 1..613 | 1..662 | 2329 | 71.3 | Plus |
Dgri\GH19810-PA | 919 | GH19810-PA | 542..808 | 249..510 | 348 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cdc6-PA | 662 | CG5971-PA | 1..662 | 1..662 | 3327 | 100 | Plus |
Orc1-PA | 924 | CG10667-PA | 393..798 | 90..494 | 359 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12416-PA | 622 | GI12416-PA | 1..622 | 1..662 | 2268 | 71.7 | Plus |
Dmoj\GI19096-PA | 908 | GI19096-PA | 465..779 | 186..494 | 352 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10294-PA | 616 | GL10294-PA | 1..616 | 1..662 | 2284 | 71.5 | Plus |
Dper\GL20109-PA | 933 | GL20109-PA | 556..805 | 249..494 | 347 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19269-PA | 616 | GA19269-PA | 1..616 | 1..662 | 2368 | 73 | Plus |
Dpse\GA10479-PA | 935 | GA10479-PA | 558..807 | 249..494 | 347 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24924-PA | 592 | GM24924-PA | 1..592 | 1..662 | 2636 | 81 | Plus |
Dsec\GM20781-PA | 924 | GM20781-PA | 538..798 | 240..494 | 352 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12971-PA | 225 | GD12971-PA | 10..225 | 447..662 | 1105 | 98.1 | Plus |
Dsim\GD17588-PA | 155 | GD17588-PA | 1..135 | 1..135 | 655 | 96.3 | Plus |
Dsim\GD10243-PA | 536 | GD10243-PA | 150..410 | 240..494 | 352 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12309-PA | 613 | GJ12309-PA | 1..613 | 1..662 | 2326 | 72.6 | Plus |
Dvir\GJ20070-PA | 923 | GJ20070-PA | 503..793 | 208..494 | 349 | 33.3 | Plus |
Translation from 96 to 2084
> LD25083.hyp MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI ASILSDTACLSK*