Clone LD25083 Report

Search the DGRC for LD25083

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:250
Well:83
Vector:pOT2
Associated Gene/TranscriptCdc6-RA
Protein status:LD25083.pep: gold
Preliminary Size:2367
Sequenced Size:2482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5971 2001-01-01 Release 2 assignment
CG5971 2001-07-04 Blastp of sequenced clone
CG5971 2003-01-01 Sim4 clustering to Release 3
Cdc6 2008-04-29 Release 5.5 accounting
Cdc6 2008-08-15 Release 5.9 accounting
Cdc6 2008-12-18 5.12 accounting

Clone Sequence Records

LD25083.complete Sequence

2482 bp (2482 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051722

> LD25083.complete
ACTGTGACTGCCAGCTGAAAATTGTAACGCACGCTGTGGCTTATTTAACT
CGTATTTAATAGTAACTAACTGCTGATCAATAAACTAAGCTAAAGAATGG
CTGCCGTACGCCGCTCCACGCGCCTTAGTAGCATCAGCAAAGCGACCGCC
GCCTCTCCGCTGCCGCCGTCGACGCAGACGCCGCGTCGCTCGGAAGTTTG
GAAACGCAGGCAGCCGAAAAAAGTGCTTGCCGATAGCGACGAGGAGGAGG
AGGTGGTGACGGCGATCTATGACCTGACCAGCCCCGTTTCAGAGAACAAC
GAGAACCGCAACGTGCTCAACAAAATGGACAAGATCTCCAGGCGCAGGAC
ATCGCAAGTGCAGGTGGCTCAATCGGAGCTGCCAAAGACGCCACGCAGCA
CAAAGAAAACAGTCCAATCAGCTGGCAGTTCACGGGCCAAACGTGAGGAG
GAAAACCGTGAGGCCACCGCTAGATTCTTGGAGGGCGAACAGGATTCGGA
GGTGGACCCGCTTCATGGATCGCCGCCGAAGCAGAGGAAGTTGCAGCCAC
TGCCACAGCACCTGATCAGTCCTTCGCGGCTGCTGGACAGACTCAGCATC
GACGAGCGCCAGGAGGAAGAGGTGGAGGCGACCACACACAAGACTGAAAC
GGCTGAGCAGCAGCCGAAACATCAAGCCAAGGACGAGGCAAAGCCTCGGC
CAAAACAGCAGGAGGATCCATTAGCGCAAAAGCAGCAGGAGAAACCTCCA
ACAAAGCAGCCGAATAAAAACCAAACTAAAGAAAAAAGCAATATCCAAAC
CAATGAGGAAACCCAACAGAATAACCTGCCATCTCCCTCACGCAACAAAT
ACCAAAACGCCAGACGAGTGCTCAACAGCGCCGAGACACAAAACTTGCCA
GGACGTGAGTCCCAGCTCCAAGAGCTACGTGAATTCTTCAGCAATCACCT
GGAAAGCCAGACTTCCGGCAGCCTCTATGTCTCCGGTCAGCCAGGAACAG
GCAAGACCGCCTGCCTATCGCTACTGCTGAGAGATCCCGACTTCTCCAAG
CGTCTGCAACGTGTGTACATTAACTGCACCAGCATAGCAAGTGTAGGAGC
AGTTTACAAGAAACTATGCACCGAACTGCAGCTCAAAGTCAGCGGTCGCA
CAGAGAGAGATCACTTGGAGGCCATTCAGCGTCACCTAAAGACAGCAAAG
CGAATGCTTCTGCTGGTGCTGGACGAGATTGATCAGCTCTGCACCAGCAG
GCAGGAGGTGTTGTACACGATCTTCGAGTGGCCAGCTCTTCCCGGCTCCA
GGATACTGCTCGTGGGCATTGCCAATAGTTTGGATCTCACAGATCGTGCG
CTGATGCGACTGAATGCAAGGTGCGAGCTGAAGCCCAGACTGATGCACTT
CCCGCCCTACTCCAAGCAGCAGATCGTGGAGATATTCAAGTCGCGTCTGG
CTGAGGCGGAAGTGCTGGACGTCTTTCCACCCGTGACCCTGCAGCTGCTG
GCCGCCAAGGTGAGTGCGATCAGTGGAGATGTGCGAAGGGCCCTGGACAT
TGGACGACGAGTGGTCGAGATAGCAGAGCAGCAGAAGCGCGATGGCGAAA
AGGAGTTCAATATGAAGGCCCTGCAGCTGGAGGGCAAGGATGCGGTGGAG
GCCAAGGAAAAGCAAGACACTCTAAAGCCTGTTCAGGTCACCCAAGTGGC
TGCAGTGCTGAACAAGGTCTACGGTGCCTCACAGAATCTGGAGGAGGACA
TCGAGGCATCATTTCCGCTGCAGCAAAAGCTAATGCTGTGCACCCTGGTG
CTGATGCTGCGCAACGAGCGCAACAAAGACATCAGTATGGGTCGCCTGCA
CGAGGTCTACAGGAGAGTGTGCGCCAAACGCAACATCCTGGCCCTGGACC
AAGCGGAGTTCACTGGGACTGTGGATCTGGTCGAGACCCGAGGCATTCTG
CGAATCATGCGCAAAAAGGAGCCGCGCCTGCACAAGGTTCTGCTGCAGTG
GGACGAGGAGGAGGTGCATGCGGCACTGAGCGACAAGCAGCTGATCGCCT
CGATCCTCAGCGATACCGCCTGCCTGAGCAAGTGACGATCTGGACGATTA
CCTCTAGGAAATGAGTGTGCCCGACAAACCGCTGGTTAATTGCGCATTTT
TCTCATTTTCATTCACCTTGGGGACGAACGTATATGTATAGGAATACTTT
TTGACGCTAATTTTAAAATTCGTGGCTGGCGCAAGCACTGAAATATTTTG
AAATATCATTTGACGGTCACTTTCGACATTTTCTGCTATTTTCTGACTAT
TAATTGAATCGATTCTTTTAGACTTTGTGTGTGTCATAAATCTAAGTAAA
TGTTGCGCCCATAATCTATTTCTAATCCGATCCGTTGACCAATAAGTTAT
AGAGAATCCCCTTCCTGTTAGCCCTAAGCAAATAAGAATAAACTAGATAG
TTCCGCAATAAAAAAAAAAAAAAAAAAAAAAA

LD25083.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc6-RA 2631 Cdc6-RA 45..2511 1..2467 12305 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8624411..8626076 1666..1 8150 99.3 Minus
chr3L 24539361 chr3L 8623540..8624334 2459..1665 3825 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8632380..8634045 1666..1 8330 100 Minus
3L 28110227 3L 8631501..8632303 2467..1665 3985 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8625480..8627145 1666..1 8330 100 Minus
3L 28103327 3L 8624601..8625403 2467..1665 3985 99.7 Minus
Blast to na_te.dros performed on 2019-03-15 22:25:17 has no hits.

LD25083.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:20 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8623540..8624332 1667..2459 98 <- Minus
chr3L 8624411..8626076 1..1666 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:03 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 1..1989 97..2085 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:25 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 1..1989 97..2085 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:51 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 1..1989 97..2085 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:51 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 1..1989 97..2085 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:49 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 1..1989 97..2085 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:13 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 37..2495 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:25 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 37..2495 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:51 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 25..2483 1..2459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:51 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 37..2495 1..2459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:49 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc6-RA 25..2483 1..2459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:20 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8631509..8632301 1667..2459 100 <- Minus
3L 8632380..8634045 1..1666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:20 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8631509..8632301 1667..2459 100 <- Minus
3L 8632380..8634045 1..1666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:20 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8631509..8632301 1667..2459 100 <- Minus
3L 8632380..8634045 1..1666 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:51 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8624609..8625401 1667..2459 100 <- Minus
arm_3L 8625480..8627145 1..1666 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:41 Download gff for LD25083.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8624609..8625401 1667..2459 100 <- Minus
3L 8625480..8627145 1..1666 100   Minus

LD25083.pep Sequence

Translation from 96 to 2084

> LD25083.pep
MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE
EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR
STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ
PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP
RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN
KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG
TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG
RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG
SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR
LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG
EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE
DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL
DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI
ASILSDTACLSK*

LD25083.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10154-PA 638 GF10154-PA 1..638 1..662 2443 74.5 Plus
Dana\GF13670-PA 915 GF13670-PA 537..787 248..494 337 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15067-PA 667 GG15067-PA 1..667 1..662 3167 92.4 Plus
Dere\GG10735-PA 913 GG10735-PA 527..787 240..494 352 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22514-PA 613 GH22514-PA 1..613 1..662 2329 71.3 Plus
Dgri\GH19810-PA 919 GH19810-PA 542..808 249..510 348 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc6-PA 662 CG5971-PA 1..662 1..662 3327 100 Plus
Orc1-PA 924 CG10667-PA 393..798 90..494 359 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12416-PA 622 GI12416-PA 1..622 1..662 2268 71.7 Plus
Dmoj\GI19096-PA 908 GI19096-PA 465..779 186..494 352 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10294-PA 616 GL10294-PA 1..616 1..662 2284 71.5 Plus
Dper\GL20109-PA 933 GL20109-PA 556..805 249..494 347 35.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19269-PA 616 GA19269-PA 1..616 1..662 2368 73 Plus
Dpse\GA10479-PA 935 GA10479-PA 558..807 249..494 347 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24924-PA 592 GM24924-PA 1..592 1..662 2636 81 Plus
Dsec\GM20781-PA 924 GM20781-PA 538..798 240..494 352 35.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12971-PA 225 GD12971-PA 10..225 447..662 1105 98.1 Plus
Dsim\GD17588-PA 155 GD17588-PA 1..135 1..135 655 96.3 Plus
Dsim\GD10243-PA 536 GD10243-PA 150..410 240..494 352 35.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12309-PA 613 GJ12309-PA 1..613 1..662 2326 72.6 Plus
Dvir\GJ20070-PA 923 GJ20070-PA 503..793 208..494 349 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17476-PA 605 GK17476-PA 1..605 1..662 2108 66.8 Plus
Dwil\GK10698-PA 888 GK10698-PA 510..761 249..494 348 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21291-PA 706 GE21291-PA 1..706 1..662 3047 87.5 Plus
Dyak\GE23860-PA 768 GE23860-PA 528..743 240..446 251 31.4 Plus

LD25083.hyp Sequence

Translation from 96 to 2084

> LD25083.hyp
MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE
EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR
STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ
PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP
RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN
KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG
TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG
RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG
SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR
LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG
EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE
DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL
DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI
ASILSDTACLSK*

LD25083.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc6-PA 662 CG5971-PA 1..662 1..662 3327 100 Plus
Orc1-PA 924 CG10667-PA 393..798 90..494 359 28.2 Plus