BDGP Sequence Production Resources |
Search the DGRC for LD25129
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 251 |
Well: | 29 |
Vector: | pOT2 |
Associated Gene/Transcript | Chi-RA |
Protein status: | LD25129.pep: gold |
Preliminary Size: | 2138 |
Sequenced Size: | 2151 |
Gene | Date | Evidence |
---|---|---|
CG3924 | 2001-01-01 | Release 2 assignment |
CG3924 | 2001-09-19 | Blastp of sequenced clone |
CG3924 | 2003-01-01 | Sim4 clustering to Release 3 |
Chi | 2008-04-29 | Release 5.5 accounting |
Chi | 2008-08-15 | Release 5.9 accounting |
Chi | 2008-12-18 | 5.12 accounting |
2151 bp (2151 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058561
> LD25129.complete GCAAAACTATCGGTGGAGGCCAATCAGTTTTCTTAAATTGTAGATACATT TATATGTGTTTGTGCTTTAAGAATTAAAATATTGTATGCCTTTTGCAAGG CCGACGCGAATGCCCGATAGAACCGACCACAGGCATGAATCGTAGGGGTT TGAACGCTGGCAATACGATGACTTCTCAAGCGAACATTGACGACGGCAGC TGGAAGGCGGTCTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGC GGTCCTCAATCCGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCC TGCCGTACAACTCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCG CCAGCCGGCAACCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTC GAACACACCTCAGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACAC CCGGACCTGTTGGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCG ACGGCGGGCAATTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATC CTCGGGACTCGGCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTA ACAGTGGCCAGGCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGC GGGCAATTCAATCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAA CCACCCGATGATGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCT TCAGGCGGCACAATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAG CTAAACAAGCGGCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTG GGACTCGTTTACCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTC TGTTCTGCCTGGAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTC ATCCCGCGCTTCTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTA CTTTCAGCTGAAGCATGCCAAGGAGTCGTTCCACAACACGTCCATCACGT TGGACTGCGACCAGTGCACGGTGATCACGCAGCACGGCAAGCCCTTCTTC ACGAAGGTCTGCGCCGACGCAAGACTGATCTTGGAGTTCATGTACGACGA CTACATGCGCATCAAGTCATGGCACATGACCATCAAGGGACACCGCGAGC TCATTCCAAGGTCCGTGATCGGCACCAGTCTGCCGCCTGACCCGATGCTG CTAGATCAAATAACCAAGAACATCACGCGCGCTGGCATCACCAACTCCAC CCTCAACTATCTGCGCCTCTGCGTCATCCTCGAACCGATGCAGGAGCTGA TGTCGCGGCACAAGGCGTACGCACTGAGTCCGCGCGACTGCCTGAAGACA ACGTTGTTCCAGAAGTGGCAGCGCATGGTGGCTCCGCCCGGCAAGAAGGA TCCGCAACGACCACCCAACAAGAGGCGCAAACGGAAGGGCTCCAACTCGG GTGGTGGCAACAACTCGAACACTCCGCCTGTGACGAACCAGAAGCGTTCC CCCTCCGGTCCCAGTTTCTCCCTCTCCTCCCAGGACGTGATGGTGGTGGG CGAGCCGACGCTGATGGGCGGCGAGTTTGGTGAGGAGGACGAGCGGCTGA TCACCCGGCTAGAGAACACGCAATACGACGGAACCAATGCCGTGGAGCAC GATAATCACACCGGCTTTGGACACGCCGACTCGCCCATATCCGGCTCGAA TCCGTGGAGCATCGACCGGGCGGGAGCCATCCCGGCCAGCCCTGGGAACG GAGCTGCCCCGCAGAACAACGCGAATATATCTGACATAGATAAAAAGAGC CCCATTGTATCGCAATAGAACTTAATAAAACATAATATTTCGCTATATTG TCAAATGTATTTTCATACTTGCATGTAAAAATATTTAAATAAAGCTTTCA AGTTTTAGGAAATGTATATAAGACATACATACATATTAAATCTATATAAT TGTACCTTAAGTCGTCTACTCTACACACTATCTATTATAATTAATTAAAC CGTAGGATACTTCTGTTCTTGTCTTGACTGCCTTGCAAAGTACTTAATGT GTTGTTTTAGTAAAACATAACTTTTAAGCACAAAAAAAAAAAAAAAAAAA A
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19917576..19919607 | 100..2131 | 99 | <- | Minus |
chr2R | 19919858..19919956 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 20..1791 | 96..1868 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 20..1791 | 96..1868 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 20..1791 | 96..1868 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 20..1791 | 96..1868 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RB | 20..1791 | 96..1868 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RA | 16..2146 | 1..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RA | 16..2146 | 1..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RA | 23..2153 | 1..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RA | 16..2146 | 1..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chi-RA | 23..2153 | 1..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031541..24033572 | 100..2131 | 100 | <- | Minus |
2R | 24033823..24033921 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031541..24033572 | 100..2131 | 100 | <- | Minus |
2R | 24033823..24033921 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24031541..24033572 | 100..2131 | 100 | <- | Minus |
2R | 24033823..24033921 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19919064..19921095 | 100..2131 | 100 | <- | Minus |
arm_2R | 19921346..19921444 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24032758..24034789 | 100..2131 | 100 | <- | Minus |
2R | 24035040..24035138 | 1..99 | 100 | Minus |
Translation from 134 to 1867
> LD25129.pep MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP ASPGNGAAPQNNANISDIDKKSPIVSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12038-PA | 577 | GF12038-PA | 1..577 | 1..577 | 3027 | 97.7 | Plus |
Dana\GF19017-PA | 218 | GF19017-PA | 79..203 | 198..322 | 663 | 93.6 | Plus |
Dana\GF19019-PA | 99 | GF19019-PA | 37..98 | 441..502 | 239 | 91.9 | Plus |
Dana\GF19018-PA | 54 | GF19018-PA | 1..40 | 341..380 | 195 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19962-PA | 596 | GG19962-PA | 20..596 | 1..577 | 3070 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21714-PA | 579 | GH21714-PA | 1..579 | 1..577 | 2828 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chi-PB | 596 | CG3924-PB | 20..596 | 1..577 | 3109 | 100 | Plus |
Chi-PA | 577 | CG3924-PA | 1..577 | 1..577 | 3109 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18855-PA | 548 | GI18855-PA | 1..548 | 32..577 | 2743 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10430-PA | 567 | GL10430-PA | 1..567 | 12..577 | 2953 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17778-PA | 567 | GA17778-PA | 1..567 | 12..577 | 2959 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18282-PA | 596 | GM18282-PA | 20..596 | 1..577 | 3076 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24979-PA | 596 | GD24979-PA | 20..596 | 1..577 | 3078 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20439-PA | 579 | GJ20439-PA | 1..579 | 1..577 | 2902 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21383-PA | 584 | GK21383-PA | 1..584 | 1..577 | 2941 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11494-PA | 596 | GE11494-PA | 20..596 | 1..577 | 3070 | 99.5 | Plus |
Translation from 134 to 1867
> LD25129.hyp MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP ASPGNGAAPQNNANISDIDKKSPIVSQ*