Clone LD25129 Report

Search the DGRC for LD25129

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:251
Well:29
Vector:pOT2
Associated Gene/TranscriptChi-RA
Protein status:LD25129.pep: gold
Preliminary Size:2138
Sequenced Size:2151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3924 2001-01-01 Release 2 assignment
CG3924 2001-09-19 Blastp of sequenced clone
CG3924 2003-01-01 Sim4 clustering to Release 3
Chi 2008-04-29 Release 5.5 accounting
Chi 2008-08-15 Release 5.9 accounting
Chi 2008-12-18 5.12 accounting

Clone Sequence Records

LD25129.complete Sequence

2151 bp (2151 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058561

> LD25129.complete
GCAAAACTATCGGTGGAGGCCAATCAGTTTTCTTAAATTGTAGATACATT
TATATGTGTTTGTGCTTTAAGAATTAAAATATTGTATGCCTTTTGCAAGG
CCGACGCGAATGCCCGATAGAACCGACCACAGGCATGAATCGTAGGGGTT
TGAACGCTGGCAATACGATGACTTCTCAAGCGAACATTGACGACGGCAGC
TGGAAGGCGGTCTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGC
GGTCCTCAATCCGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCC
TGCCGTACAACTCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCG
CCAGCCGGCAACCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTC
GAACACACCTCAGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACAC
CCGGACCTGTTGGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCG
ACGGCGGGCAATTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATC
CTCGGGACTCGGCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTA
ACAGTGGCCAGGCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGC
GGGCAATTCAATCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAA
CCACCCGATGATGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCT
TCAGGCGGCACAATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAG
CTAAACAAGCGGCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTG
GGACTCGTTTACCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTC
TGTTCTGCCTGGAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTC
ATCCCGCGCTTCTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTA
CTTTCAGCTGAAGCATGCCAAGGAGTCGTTCCACAACACGTCCATCACGT
TGGACTGCGACCAGTGCACGGTGATCACGCAGCACGGCAAGCCCTTCTTC
ACGAAGGTCTGCGCCGACGCAAGACTGATCTTGGAGTTCATGTACGACGA
CTACATGCGCATCAAGTCATGGCACATGACCATCAAGGGACACCGCGAGC
TCATTCCAAGGTCCGTGATCGGCACCAGTCTGCCGCCTGACCCGATGCTG
CTAGATCAAATAACCAAGAACATCACGCGCGCTGGCATCACCAACTCCAC
CCTCAACTATCTGCGCCTCTGCGTCATCCTCGAACCGATGCAGGAGCTGA
TGTCGCGGCACAAGGCGTACGCACTGAGTCCGCGCGACTGCCTGAAGACA
ACGTTGTTCCAGAAGTGGCAGCGCATGGTGGCTCCGCCCGGCAAGAAGGA
TCCGCAACGACCACCCAACAAGAGGCGCAAACGGAAGGGCTCCAACTCGG
GTGGTGGCAACAACTCGAACACTCCGCCTGTGACGAACCAGAAGCGTTCC
CCCTCCGGTCCCAGTTTCTCCCTCTCCTCCCAGGACGTGATGGTGGTGGG
CGAGCCGACGCTGATGGGCGGCGAGTTTGGTGAGGAGGACGAGCGGCTGA
TCACCCGGCTAGAGAACACGCAATACGACGGAACCAATGCCGTGGAGCAC
GATAATCACACCGGCTTTGGACACGCCGACTCGCCCATATCCGGCTCGAA
TCCGTGGAGCATCGACCGGGCGGGAGCCATCCCGGCCAGCCCTGGGAACG
GAGCTGCCCCGCAGAACAACGCGAATATATCTGACATAGATAAAAAGAGC
CCCATTGTATCGCAATAGAACTTAATAAAACATAATATTTCGCTATATTG
TCAAATGTATTTTCATACTTGCATGTAAAAATATTTAAATAAAGCTTTCA
AGTTTTAGGAAATGTATATAAGACATACATACATATTAAATCTATATAAT
TGTACCTTAAGTCGTCTACTCTACACACTATCTATTATAATTAATTAAAC
CGTAGGATACTTCTGTTCTTGTCTTGACTGCCTTGCAAAGTACTTAATGT
GTTGTTTTAGTAAAACATAACTTTTAAGCACAAAAAAAAAAAAAAAAAAA
A

LD25129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-RA 2346 Chi-RA 210..2342 1..2133 10665 100 Plus
Chi-RB 2124 Chi-RB 91..2124 100..2133 10170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19917576..19919609 2131..98 10140 99.9 Minus
chr2R 21145070 chr2R 19919857..19919956 100..1 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24031539..24033574 2133..98 10180 100 Minus
2R 25286936 2R 24033822..24033921 100..1 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24032738..24034773 2133..98 10180 100 Minus
2R 25260384 2R 24035021..24035120 100..1 500 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:06:07 has no hits.

LD25129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:06:54 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19917576..19919607 100..2131 99 <- Minus
chr2R 19919858..19919956 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:05 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 20..1791 96..1868 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:03 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 20..1791 96..1868 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:06:17 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 20..1791 96..1868 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:31 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 20..1791 96..1868 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:57:21 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RB 20..1791 96..1868 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:50:11 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RA 16..2146 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:03 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RA 16..2146 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:17 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RA 23..2153 1..2131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:32 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RA 16..2146 1..2131 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:57:21 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
Chi-RA 23..2153 1..2131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:54 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031541..24033572 100..2131 100 <- Minus
2R 24033823..24033921 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:54 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031541..24033572 100..2131 100 <- Minus
2R 24033823..24033921 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:06:54 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24031541..24033572 100..2131 100 <- Minus
2R 24033823..24033921 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:17 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19919064..19921095 100..2131 100 <- Minus
arm_2R 19921346..19921444 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:09:13 Download gff for LD25129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24032758..24034789 100..2131 100 <- Minus
2R 24035040..24035138 1..99 100   Minus

LD25129.pep Sequence

Translation from 134 to 1867

> LD25129.pep
MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG
FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP
SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS
SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME
RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD
ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH
NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI
KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE
PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR
KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE
EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP
ASPGNGAAPQNNANISDIDKKSPIVSQ*

LD25129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12038-PA 577 GF12038-PA 1..577 1..577 3027 97.7 Plus
Dana\GF19017-PA 218 GF19017-PA 79..203 198..322 663 93.6 Plus
Dana\GF19019-PA 99 GF19019-PA 37..98 441..502 239 91.9 Plus
Dana\GF19018-PA 54 GF19018-PA 1..40 341..380 195 90 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19962-PA 596 GG19962-PA 20..596 1..577 3070 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21714-PA 579 GH21714-PA 1..579 1..577 2828 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-PB 596 CG3924-PB 20..596 1..577 3109 100 Plus
Chi-PA 577 CG3924-PA 1..577 1..577 3109 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18855-PA 548 GI18855-PA 1..548 32..577 2743 93.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10430-PA 567 GL10430-PA 1..567 12..577 2953 97.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17778-PA 567 GA17778-PA 1..567 12..577 2959 97.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18282-PA 596 GM18282-PA 20..596 1..577 3076 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24979-PA 596 GD24979-PA 20..596 1..577 3078 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20439-PA 579 GJ20439-PA 1..579 1..577 2902 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21383-PA 584 GK21383-PA 1..584 1..577 2941 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11494-PA 596 GE11494-PA 20..596 1..577 3070 99.5 Plus

LD25129.hyp Sequence

Translation from 134 to 1867

> LD25129.hyp
MNRRGLNAGNTMTSQANIDDGSWKAVSEGGSMLPASNSAVLNPDGSNQSG
FAQGGLPYNSAGNPYPPAGQSSPAGNQSIVFQNSNQPGSNTPQYTSSPAP
SGSSTPGPVGAQNIPGNYPQSATAGNFNGPVGGPFGSPSSGLGQFSRPAS
SGTPFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQME
RIDQGFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDD
ARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFH
NTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTI
KGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILE
PMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR
KGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGE
EDERLITRLENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIP
ASPGNGAAPQNNANISDIDKKSPIVSQ*

LD25129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Chi-PB 596 CG3924-PB 20..596 1..577 3109 100 Plus
Chi-PA 577 CG3924-PA 1..577 1..577 3109 100 Plus