BDGP Sequence Production Resources |
Search the DGRC for LD25202
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 252 |
Well: | 2 |
Vector: | pOT2 |
Associated Gene/Transcript | Jra-RA |
Protein status: | LD25202.pep: gold |
Preliminary Size: | 1613 |
Sequenced Size: | 1525 |
Gene | Date | Evidence |
---|---|---|
CG2275 | 2001-09-19 | Blastp of sequenced clone |
CG2275 | 2003-01-01 | Sim4 clustering to Release 3 |
Jra | 2008-04-29 | Release 5.5 accounting |
Jra | 2008-08-15 | Release 5.9 accounting |
Jra | 2008-12-18 | 5.12 accounting |
1525 bp (1525 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058562
> LD25202.complete AGCACTCATTCTGAAAACAACCTTGCGCGTAATAAATATTTTCGTAAAAT TATTTAGCGAAACCAAAATAAAAATCAAACGATTCGTTGGCCGATAAAAC CGGTGATTAAGCAGTGGCAGTGCAGAAAGCAGAAAACACAAAAGTACAGA TTGTGCTAATCAAATTTTGCAAGCAAAGTTCCCACCCACTGATTGACGTC ATTGCTTGAGCAAACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAAG TATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCTA AAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTCG CCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGCT GGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTGG TCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTTG GAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAAA GGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTCG GCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGCA TTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTGC GGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACCT ACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAAT CAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGAA GATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAGT GCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAAG GTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCAA GGACCATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCGG GCTGCACGGTGCCGCCGAACTCGACAGACCAATAACATTTGGAGTTGTCA GCCGGGGAGAATGATGAGGAGGACGTGGCACTGGAGACTGAAACCCCCTC GAATCCTGAAGATCCCGAGCAACCCATGCCTCTGGAATTCTTTTCAAGTG CTAGCACCGGTGCCTTGGAGCTGGAGGGCTCGGCCTCTCAGGATATTTCC CTAACTAACAGCGAACTCCTGGAGGAGGAGAGCGATAACGAACAGCCTCT GGTGCTCTACATCCTCGCGGACGACGCAACCTGAGGCTTTGTGCCTTTCT TTGGTTTTAGCTGCAATATCTGAAATGCTTCTTAAGTGTTTTGTTTACTT AGTTATTAGTATAAGCTAGTGTTAATCAAGTATTATCTGTGTTGAACGTA AGATAATATGTAATGTACTTTTAAAATATACGTATATTTTCTGCACTTGA TATATAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tabor | 7345 | Tabor TABOR 7345bp | 2881..2975 | 33..130 | 113 | 61.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5984503..5984693 | 1..191 | 100 | -> | Plus |
chr2R | 5984798..5986111 | 192..1505 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 1..870 | 216..1085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 1..870 | 216..1085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RC | 1..1119 | 216..1334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 1..870 | 216..1085 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RC | 1..1119 | 216..1334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 12..1516 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 12..1516 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 21..1525 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 12..1516 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jra-RA | 21..1525 | 1..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10096948..10097138 | 1..191 | 100 | -> | Plus |
2R | 10097243..10098556 | 192..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10096948..10097138 | 1..191 | 100 | -> | Plus |
2R | 10097243..10098556 | 192..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10096948..10097138 | 1..191 | 100 | -> | Plus |
2R | 10097243..10098556 | 192..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5984453..5984643 | 1..191 | 100 | -> | Plus |
arm_2R | 5984748..5986061 | 192..1505 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10098147..10098337 | 1..191 | 100 | -> | Plus |
2R | 10098442..10099755 | 192..1505 | 100 | Plus |
Translation from 215 to 1084
> LD25202.hyp MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQ*
Translation from 215 to 1084
> LD25202.pep MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12018-PA | 355 | GF12018-PA | 1..286 | 1..288 | 1032 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24138-PA | 285 | GG24138-PA | 1..285 | 1..289 | 1318 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21247-PA | 309 | GH21247-PA | 25..297 | 26..282 | 822 | 64.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jra-PC | 372 | CG2275-PC | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PA | 289 | CG2275-PA | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PB | 289 | CG2275-PB | 1..289 | 1..289 | 1462 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20534-PA | 283 | GI20534-PA | 12..276 | 15..280 | 898 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17608-PA | 293 | GL17608-PA | 27..282 | 26..283 | 1072 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30492-PB | 293 | GA30492-PB | 27..282 | 26..283 | 1072 | 80 | Plus |
Dpse\GA30492-PA | 404 | GA30492-PA | 27..282 | 26..283 | 1068 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21184-PA | 285 | GM21184-PA | 1..285 | 1..289 | 1328 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15385-PA | 289 | GD15385-PA | 1..289 | 1..289 | 1462 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22384-PA | 292 | GJ22384-PA | 14..280 | 15..282 | 926 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21594-PA | 281 | GK21594-PA | 21..275 | 26..286 | 886 | 69.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19337-PA | 284 | GE19337-PA | 1..284 | 1..289 | 1352 | 90.7 | Plus |