Clone LD25232 Report

Search the DGRC for LD25232

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:252
Well:32
Vector:pOT2
Associated Gene/TranscriptFer1HCH-RA
Protein status:LD25232.pep: gold
Preliminary Size:1771
Sequenced Size:1644

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2216 2001-01-01 Release 2 assignment
CG2216 2001-07-04 Blastp of sequenced clone
CG2216 2003-01-01 Sim4 clustering to Release 3
Fer1HCH 2008-04-29 Release 5.5 accounting
Fer1HCH 2008-08-15 Release 5.9 accounting
Fer1HCH 2008-12-18 5.12 accounting

Clone Sequence Records

LD25232.complete Sequence

1644 bp (1644 high quality bases) assembled on 2001-07-04

GenBank Submission: AY061831

> LD25232.complete
ATTGCATTTGATAAATTTACTTCTTAGTAAGTGGGGATTATCTGACTAGG
AAACCCGACTTTATACAAAGTATACCCATATTGAGGACGTGTGTATCACA
TTGAGTGCGGCAATTATCGGGAATATTCAATTATCAGCCATTTAAACGGT
TAACAAAGAACGGGCGACATGTTGAAAAGATAACAGTGCACACTCTCCCA
TCACTCACACACACACGAAGAAAAACCGAGAGCGCGCGCGCTTAAAAGTG
TTTTGTGCGCCGTTCGGAGCGACAGTTCGCTTTCGAGTTCGCTAAAACAC
AACGTAGAAAGGCCTTAGCTCCACTGAAAAATCAGATTAAAGCTGTCAGC
AGAAGGTACTGGAAAGCATTCGAGAAGTCGAAAATAATCCCAATCAAGCC
CATCAAATTGAAGCAGGCGACGCCTTCTGCGCCAGTGTGTGTAAAGGCAG
CTAGATTTTCAATTTCAACGCCTATTTAACATTGTAGCTCAACTCGAGTC
GCCTCATTCTCATTTGTGCATTTCAAGCAAATCAAACTAAAGTGAAAAAC
AAATTTTTGTTCTGTGATTTTGTGTAAAGACTACGTTCGACGATCAAAGA
TGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGTGGCCCAGGCC
TATGGAGATTTCAAGTGCTCCCTGGCTGTTCCTGAGATTACCAAGGACTG
GGTGGACATGAAGGATGCCTGCATAAAGGGCATGCGCAATCAGATCCAGG
AGGAGATCAACGCCTCCTACCAGTACTTGGCCATGGGCGCCTACTTCTCC
CGCGACACCGTCAACCGCCCTGGATTCGCCGAGCACTTCTTCAAGGCCGC
CAAGGAGGAACGTGAGCACGGATCCAAGCTGGTGGAGTACCTGTCCATGC
GCGGTCAACTGACCGAGGGAGTCAGCGATCTGATCAATGTGCCGACTGTG
GCCAAGCAGGAGTGGACCGATGGTGCCGCCGCCCTGTCCGACGCCCTCGA
CCTGGAGATCAAGGTGACCAAGTCCATCCGCAAGCTGATCCAGACCTGCG
AGAACAAGCCCTACAACCACTACCACCTGGTGGACTACCTGACCGGTGTC
TATCTGGAGGAGCAGCTCCACGGACAGCGCGAGCTCGCCGGCAAGCTGAC
CACTCTCAAGAAGATGATGGACACCAACGGCGAACTGGGCGAGTTCCTGT
TCGACAAGACCCTGTAAGGAGGTGGAGATAGAGAAGGCGCAGCGCCCAGT
CACGCATCAAAATTATCAGCCAGTCGAGTTATCTGTTATCTGTCAGCCCA
GAGAGCCTTCCCGAGGGTCCGCTATTAAATCATCACCAGCCAAGTCGGCG
ACTGGCCAATAAATTATCCGTTCGACTGCGATCCTCAAACCAGCACAGCA
AAATTCCACGTCTGTTCTTTCTTATCAACCACTTGTGATTTCCGTACACC
TCGGGAGGGGGCTCCACATTATGCAATCGCCGAGATTTCGCCTAGGCTTA
AGTGGAATCGCTCATTCGCATAGTAAGACACTCAGCACAACCCATTCAAT
ACATCCTATATCTTTATATTTTTCTGTCAATTAGACGAGCAAGTTCTTAA
ATAAATAACAATATATATGTAACGAAAAAAAAAAAAAAAAAAAA

LD25232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RA 1642 Fer1HCH-RA 1..1631 1..1631 8140 99.9 Plus
Fer1HCH-RC 1505 Fer1HCH-RC 349..1494 486..1631 5715 99.9 Plus
Fer1HCH-RD 1465 Fer1HCH-RD 348..1454 525..1631 5520 99.9 Plus
Fer1HCH-RC 1505 Fer1HCH-RC 1..350 6..355 1750 100 Plus
Fer1HCH-RD 1465 Fer1HCH-RD 1..350 6..355 1750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26208102..26208782 1624..944 3375 99.7 Minus
chr3R 27901430 chr3R 26209987..26210653 667..1 3305 99.7 Minus
chr3R 27901430 chr3R 26208844..26209121 944..667 1375 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30385570..30386257 1631..944 3425 99.9 Minus
3R 32079331 3R 30387463..30388129 667..1 3335 100 Minus
3R 32079331 3R 30386319..30386596 944..667 1390 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30126401..30127088 1631..944 3425 99.8 Minus
3R 31820162 3R 30128294..30128960 667..1 3335 100 Minus
3R 31820162 3R 30127150..30127427 944..667 1390 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:43:42 has no hits.

LD25232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:44:49 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26208844..26209121 667..944 99 <- Minus
chr3R 26208102..26208781 945..1624 99 <- Minus
chr3R 26209988..26210653 1..666 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:11 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RC 1..618 600..1217 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:18 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RC 1..618 600..1217 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:06:38 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 1..618 600..1217 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:32 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RC 1..618 600..1217 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:15 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 1..618 600..1217 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:03 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RA 1..1624 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:18 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RA 1..1624 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:06:38 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RA 50..1673 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:32 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RA 1..1624 1..1624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:15 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RA 50..1673 1..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:49 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30385577..30386256 945..1624 100 <- Minus
3R 30386319..30386596 667..944 100 <- Minus
3R 30387464..30388129 1..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:49 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30385577..30386256 945..1624 100 <- Minus
3R 30386319..30386596 667..944 100 <- Minus
3R 30387464..30388129 1..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:44:49 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30385577..30386256 945..1624 100 <- Minus
3R 30386319..30386596 667..944 100 <- Minus
3R 30387464..30388129 1..666 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:06:38 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26211299..26211978 945..1624 100 <- Minus
arm_3R 26212041..26212318 667..944 100 <- Minus
arm_3R 26213186..26213851 1..666 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:32 Download gff for LD25232.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30126408..30127087 945..1624 100 <- Minus
3R 30127150..30127427 667..944 100 <- Minus
3R 30128295..30128960 1..666 100   Minus

LD25232.pep Sequence

Translation from 599 to 1216

> LD25232.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC
ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL
FDKTL*

LD25232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16185-PA 205 GF16185-PA 1..205 1..205 850 80.5 Plus
Dana\GF20872-PA 189 GF20872-PA 24..179 40..205 224 33.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11946-PA 205 GG11946-PA 1..205 1..205 1081 98.5 Plus
Dere\GG19524-PA 189 GG19524-PA 23..178 40..205 227 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18415-PA 212 GH18415-PA 1..212 1..205 720 66.7 Plus
Dgri\GH24547-PA 190 GH24547-PA 24..179 40..205 224 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-PD 205 CG2216-PD 1..205 1..205 1055 100 Plus
Fer1HCH-PC 205 CG2216-PC 1..205 1..205 1055 100 Plus
Fer1HCH-PB 205 CG2216-PB 1..205 1..205 1055 100 Plus
Fer1HCH-PA 205 CG2216-PA 1..205 1..205 1055 100 Plus
Fer1HCH-PI 245 CG2216-PI 1..245 1..205 1004 83.7 Plus
Fer1HCH-PG 242 CG2216-PG 1..242 1..205 997 84.3 Plus
Fer1HCH-PF 242 CG2216-PF 1..242 1..205 997 84.3 Plus
Fer1HCH-PJ 169 CG2216-PJ 1..169 37..205 876 100 Plus
Fer1HCH-PE 121 CG2216-PE 1..115 1..115 588 100 Plus
Fer3HCH-PA 186 CG4349-PA 23..176 40..203 225 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24318-PA 194 GI24318-PA 1..194 14..205 662 66.3 Plus
Dmoj\GI16260-PA 190 GI16260-PA 23..178 40..205 219 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14055-PA 206 GL14055-PA 1..206 1..205 944 85.9 Plus
Dper\GL16490-PA 194 GL16490-PA 24..179 40..205 234 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15307-PC 206 GA15307-PC 1..206 1..205 944 85.9 Plus
Dpse\GA15307-PB 206 GA15307-PB 1..206 1..205 944 85.9 Plus
Dpse\GA15307-PA 206 GA15307-PA 1..206 1..205 944 85.9 Plus
Dpse\GA22605-PA 273 GA22605-PA 103..258 40..205 236 33.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12162-PA 205 GM12162-PA 1..205 1..205 1083 98.5 Plus
Dsec\GM11516-PA 186 GM11516-PA 23..178 40..205 238 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17157-PA 205 GD17157-PA 1..205 1..205 1086 99 Plus
Dsim\GD15908-PA 186 GD15908-PA 23..178 40..205 238 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10402-PA 212 GJ10402-PA 1..212 1..205 715 67.1 Plus
Dvir\GJ16902-PA 193 GJ16902-PA 23..178 40..205 223 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13135-PA 245 GK13135-PA 1..245 1..205 894 71.4 Plus
Dwil\GK25020-PA 202 GK25020-PA 28..180 41..203 243 34.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Fer1HCH-PA 205 GE23394-PA 1..205 1..205 1078 97.6 Plus
Dyak\GE16178-PA 186 GE16178-PA 19..178 36..205 220 32.6 Plus

LD25232.hyp Sequence

Translation from 599 to 1216

> LD25232.hyp
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC
ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL
FDKTL*

LD25232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-PD 205 CG2216-PD 1..205 1..205 1055 100 Plus
Fer1HCH-PC 205 CG2216-PC 1..205 1..205 1055 100 Plus
Fer1HCH-PB 205 CG2216-PB 1..205 1..205 1055 100 Plus
Fer1HCH-PA 205 CG2216-PA 1..205 1..205 1055 100 Plus
Fer1HCH-PI 245 CG2216-PI 1..245 1..205 1004 83.7 Plus