BDGP Sequence Production Resources |
Search the DGRC for LD25232
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 252 |
Well: | 32 |
Vector: | pOT2 |
Associated Gene/Transcript | Fer1HCH-RA |
Protein status: | LD25232.pep: gold |
Preliminary Size: | 1771 |
Sequenced Size: | 1644 |
Gene | Date | Evidence |
---|---|---|
CG2216 | 2001-01-01 | Release 2 assignment |
CG2216 | 2001-07-04 | Blastp of sequenced clone |
CG2216 | 2003-01-01 | Sim4 clustering to Release 3 |
Fer1HCH | 2008-04-29 | Release 5.5 accounting |
Fer1HCH | 2008-08-15 | Release 5.9 accounting |
Fer1HCH | 2008-12-18 | 5.12 accounting |
1644 bp (1644 high quality bases) assembled on 2001-07-04
GenBank Submission: AY061831
> LD25232.complete ATTGCATTTGATAAATTTACTTCTTAGTAAGTGGGGATTATCTGACTAGG AAACCCGACTTTATACAAAGTATACCCATATTGAGGACGTGTGTATCACA TTGAGTGCGGCAATTATCGGGAATATTCAATTATCAGCCATTTAAACGGT TAACAAAGAACGGGCGACATGTTGAAAAGATAACAGTGCACACTCTCCCA TCACTCACACACACACGAAGAAAAACCGAGAGCGCGCGCGCTTAAAAGTG TTTTGTGCGCCGTTCGGAGCGACAGTTCGCTTTCGAGTTCGCTAAAACAC AACGTAGAAAGGCCTTAGCTCCACTGAAAAATCAGATTAAAGCTGTCAGC AGAAGGTACTGGAAAGCATTCGAGAAGTCGAAAATAATCCCAATCAAGCC CATCAAATTGAAGCAGGCGACGCCTTCTGCGCCAGTGTGTGTAAAGGCAG CTAGATTTTCAATTTCAACGCCTATTTAACATTGTAGCTCAACTCGAGTC GCCTCATTCTCATTTGTGCATTTCAAGCAAATCAAACTAAAGTGAAAAAC AAATTTTTGTTCTGTGATTTTGTGTAAAGACTACGTTCGACGATCAAAGA TGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGTGGCCCAGGCC TATGGAGATTTCAAGTGCTCCCTGGCTGTTCCTGAGATTACCAAGGACTG GGTGGACATGAAGGATGCCTGCATAAAGGGCATGCGCAATCAGATCCAGG AGGAGATCAACGCCTCCTACCAGTACTTGGCCATGGGCGCCTACTTCTCC CGCGACACCGTCAACCGCCCTGGATTCGCCGAGCACTTCTTCAAGGCCGC CAAGGAGGAACGTGAGCACGGATCCAAGCTGGTGGAGTACCTGTCCATGC GCGGTCAACTGACCGAGGGAGTCAGCGATCTGATCAATGTGCCGACTGTG GCCAAGCAGGAGTGGACCGATGGTGCCGCCGCCCTGTCCGACGCCCTCGA CCTGGAGATCAAGGTGACCAAGTCCATCCGCAAGCTGATCCAGACCTGCG AGAACAAGCCCTACAACCACTACCACCTGGTGGACTACCTGACCGGTGTC TATCTGGAGGAGCAGCTCCACGGACAGCGCGAGCTCGCCGGCAAGCTGAC CACTCTCAAGAAGATGATGGACACCAACGGCGAACTGGGCGAGTTCCTGT TCGACAAGACCCTGTAAGGAGGTGGAGATAGAGAAGGCGCAGCGCCCAGT CACGCATCAAAATTATCAGCCAGTCGAGTTATCTGTTATCTGTCAGCCCA GAGAGCCTTCCCGAGGGTCCGCTATTAAATCATCACCAGCCAAGTCGGCG ACTGGCCAATAAATTATCCGTTCGACTGCGATCCTCAAACCAGCACAGCA AAATTCCACGTCTGTTCTTTCTTATCAACCACTTGTGATTTCCGTACACC TCGGGAGGGGGCTCCACATTATGCAATCGCCGAGATTTCGCCTAGGCTTA AGTGGAATCGCTCATTCGCATAGTAAGACACTCAGCACAACCCATTCAAT ACATCCTATATCTTTATATTTTTCTGTCAATTAGACGAGCAAGTTCTTAA ATAAATAACAATATATATGTAACGAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer1HCH-RA | 1642 | Fer1HCH-RA | 1..1631 | 1..1631 | 8140 | 99.9 | Plus |
Fer1HCH-RC | 1505 | Fer1HCH-RC | 349..1494 | 486..1631 | 5715 | 99.9 | Plus |
Fer1HCH-RD | 1465 | Fer1HCH-RD | 348..1454 | 525..1631 | 5520 | 99.9 | Plus |
Fer1HCH-RC | 1505 | Fer1HCH-RC | 1..350 | 6..355 | 1750 | 100 | Plus |
Fer1HCH-RD | 1465 | Fer1HCH-RD | 1..350 | 6..355 | 1750 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26208102..26208782 | 1624..944 | 3375 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 26209987..26210653 | 667..1 | 3305 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 26208844..26209121 | 944..667 | 1375 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30385570..30386257 | 1631..944 | 3425 | 99.9 | Minus |
3R | 32079331 | 3R | 30387463..30388129 | 667..1 | 3335 | 100 | Minus |
3R | 32079331 | 3R | 30386319..30386596 | 944..667 | 1390 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30126401..30127088 | 1631..944 | 3425 | 99.8 | Minus |
3R | 31820162 | 3R | 30128294..30128960 | 667..1 | 3335 | 100 | Minus |
3R | 31820162 | 3R | 30127150..30127427 | 944..667 | 1390 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26208844..26209121 | 667..944 | 99 | <- | Minus |
chr3R | 26208102..26208781 | 945..1624 | 99 | <- | Minus |
chr3R | 26209988..26210653 | 1..666 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RC | 1..618 | 600..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RC | 1..618 | 600..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RB | 1..618 | 600..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RC | 1..618 | 600..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RB | 1..618 | 600..1217 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RA | 1..1624 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RA | 1..1624 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RA | 50..1673 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RA | 1..1624 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer1HCH-RA | 50..1673 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30385577..30386256 | 945..1624 | 100 | <- | Minus |
3R | 30386319..30386596 | 667..944 | 100 | <- | Minus |
3R | 30387464..30388129 | 1..666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30385577..30386256 | 945..1624 | 100 | <- | Minus |
3R | 30386319..30386596 | 667..944 | 100 | <- | Minus |
3R | 30387464..30388129 | 1..666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30385577..30386256 | 945..1624 | 100 | <- | Minus |
3R | 30386319..30386596 | 667..944 | 100 | <- | Minus |
3R | 30387464..30388129 | 1..666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26211299..26211978 | 945..1624 | 100 | <- | Minus |
arm_3R | 26212041..26212318 | 667..944 | 100 | <- | Minus |
arm_3R | 26213186..26213851 | 1..666 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30126408..30127087 | 945..1624 | 100 | <- | Minus |
3R | 30127150..30127427 | 667..944 | 100 | <- | Minus |
3R | 30128295..30128960 | 1..666 | 100 | Minus |
Translation from 599 to 1216
> LD25232.pep MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL FDKTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16185-PA | 205 | GF16185-PA | 1..205 | 1..205 | 850 | 80.5 | Plus |
Dana\GF20872-PA | 189 | GF20872-PA | 24..179 | 40..205 | 224 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11946-PA | 205 | GG11946-PA | 1..205 | 1..205 | 1081 | 98.5 | Plus |
Dere\GG19524-PA | 189 | GG19524-PA | 23..178 | 40..205 | 227 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18415-PA | 212 | GH18415-PA | 1..212 | 1..205 | 720 | 66.7 | Plus |
Dgri\GH24547-PA | 190 | GH24547-PA | 24..179 | 40..205 | 224 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PB | 205 | CG2216-PB | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PA | 205 | CG2216-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..205 | 1004 | 83.7 | Plus |
Fer1HCH-PG | 242 | CG2216-PG | 1..242 | 1..205 | 997 | 84.3 | Plus |
Fer1HCH-PF | 242 | CG2216-PF | 1..242 | 1..205 | 997 | 84.3 | Plus |
Fer1HCH-PJ | 169 | CG2216-PJ | 1..169 | 37..205 | 876 | 100 | Plus |
Fer1HCH-PE | 121 | CG2216-PE | 1..115 | 1..115 | 588 | 100 | Plus |
Fer3HCH-PA | 186 | CG4349-PA | 23..176 | 40..203 | 225 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24318-PA | 194 | GI24318-PA | 1..194 | 14..205 | 662 | 66.3 | Plus |
Dmoj\GI16260-PA | 190 | GI16260-PA | 23..178 | 40..205 | 219 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14055-PA | 206 | GL14055-PA | 1..206 | 1..205 | 944 | 85.9 | Plus |
Dper\GL16490-PA | 194 | GL16490-PA | 24..179 | 40..205 | 234 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15307-PC | 206 | GA15307-PC | 1..206 | 1..205 | 944 | 85.9 | Plus |
Dpse\GA15307-PB | 206 | GA15307-PB | 1..206 | 1..205 | 944 | 85.9 | Plus |
Dpse\GA15307-PA | 206 | GA15307-PA | 1..206 | 1..205 | 944 | 85.9 | Plus |
Dpse\GA22605-PA | 273 | GA22605-PA | 103..258 | 40..205 | 236 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12162-PA | 205 | GM12162-PA | 1..205 | 1..205 | 1083 | 98.5 | Plus |
Dsec\GM11516-PA | 186 | GM11516-PA | 23..178 | 40..205 | 238 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17157-PA | 205 | GD17157-PA | 1..205 | 1..205 | 1086 | 99 | Plus |
Dsim\GD15908-PA | 186 | GD15908-PA | 23..178 | 40..205 | 238 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10402-PA | 212 | GJ10402-PA | 1..212 | 1..205 | 715 | 67.1 | Plus |
Dvir\GJ16902-PA | 193 | GJ16902-PA | 23..178 | 40..205 | 223 | 33.3 | Plus |
Translation from 599 to 1216
> LD25232.hyp MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL FDKTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PB | 205 | CG2216-PB | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PA | 205 | CG2216-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..205 | 1004 | 83.7 | Plus |