BDGP Sequence Production Resources |
Search the DGRC for LD25280
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 252 |
Well: | 80 |
Vector: | pOT2 |
Associated Gene/Transcript | CG9967-RA |
Protein status: | LD25280.pep: gold |
Preliminary Size: | 1696 |
Sequenced Size: | 1650 |
Gene | Date | Evidence |
---|---|---|
CG9967 | 2001-09-19 | Blastp of sequenced clone |
CG9967 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9967 | 2008-04-29 | Release 5.5 accounting |
CG9967 | 2008-08-15 | Release 5.9 accounting |
CG9967 | 2008-12-18 | 5.12 accounting |
1650 bp (1650 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058564
> LD25280.complete CGAATCAAAAACAACTTGCGATTGAAATCGAAGTTCGAAAAGTTAGTTGT AGCTAACCAGCTTTGGCCAAATGGTATCAAAGAGACCTGGATCGTTGTGC TCCGGGTTTTCCCTTCTCAAGAACCGAATCAACCGAACCAGCTAAAGTGA ACTGAATGTCTCTTAATTGTGCAATTGTTTGTTTAAAGTGCATGTGAACA AGATACGCTAATAAAAGTCTTCGGATCGGTGGTAAACTATAAAACTATAA AACCGCAGCTTACATAATTAGCCTGATTAAACCAGGCCAAAGTTGGTCGG ATGTCAAAGGGTTTTGAGTGAAAGTACAAGTGAAAGCCCGATCGCCGCCG ACATTTTAGTGCTGCAAACCACTTTATCCCTAAAATCATAGAAGTCGGCA CGTTGAGTTGGCCTGGCCAAAAGCCACAAGCACCAAAGGCAGCTGGCCAC GGGGACGAGGAGAGTGGCACAATAGACAAAGTGTATCAATTATAATACGG GCACAAGGCGAAGGATCCCCAGCCGGGGGCCAAAGGAAGGGGATCCGGGG TCCAGTAACCAGGAGCCGAAAAGCAGGATACCAGAGTTGCAGCTAACACA AAGAGAAAAGGAACTAAAGAGGCAACCACACTTGCAGAGCCATGTTGGCT ACGACAAGTACAACCACAATTACCTCGGATCCGGGCATCCTCTGTTTTCA TCACTGCAACGTGAAAGTTTTCTGCTTCACTTTGCCGCACACTTGTCCCC ATTGCAATGCCCCACTGGACGCGGATGTGGATGCGCATGGGGATGTCGAT GGGGATGCGGATCCGAGTGCGCAACTAGACAGGGCCGGGCCACGCCTCCT CCTCCTGCCCTTCCGCCTGCCATATCCTTTTGTGCGGGCCACGCAGCATC CGTGCGCCATTGTCCTGCGTCCCTCCGCCGGCGATTTCCTCAACGATTAC AGCAACGCCACCGATTTGCATATCGCAGTGACCACATCCGGCGGCGACAT CGTGGAGTTCGATCGCTTTGGCCTTCGCCGCCATCGGCGGGATGATAATC CTCCGGAGTGGCGGCAGTCGCTGATGGTGGGCGATGTGCCGGAGCCGTGG CACGACTTTTGGGACGAGGTCCTGCAGCAGATCTGCGCCCAATCGGTGCG CTGGTCCATCGCCAGTTATGCGGAGGAGAGCCACAACTGCTACGCCTTCG TCCTGGCCTTCCTGCAGGCCCTCGGCCACGCCCACCTGAGCGAGGCCGCC CGCAGCAAGACCGCCTTCTGTGAGCAGTGCATTGTTCCAAGGACGACGAC AGCGGGCAAGTACATCTCGCTGTATCGCAAAATCCGCAGGAGCGGCATCT ACGTCCATCGCCAGCAGCCTAAAAACCGCAGTAAGCCAGCATCCGCAACT CCTCCAAGTTCCTACCCCTCAGACTCGTGCGATGGCCTTGGCAGCAGCAA AAAGGTCTCAAAAAAAGGATACTCCAGCAGCAGTATTACAGGACTTGCCA ACCGCCCGCGGCCCACGCTCTGCACCATCGAAGAGTAATTAATCGATTAG ATAGAAATTGTGTTTGCAACTTTGCAAAGACTTTAGCGTAGTTAAATTTA ATAAATTCAGAACAAAAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2308550..2309045 | 1623..1128 | 2405 | 99 | Minus |
chr2L | 23010047 | chr2L | 2309878..2310203 | 943..618 | 1570 | 98.8 | Minus |
chr2L | 23010047 | chr2L | 2356789..2357043 | 255..1 | 1275 | 100 | Minus |
chr2L | 23010047 | chr2L | 2310414..2310623 | 619..410 | 1035 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 2309268..2309464 | 1130..934 | 955 | 99 | Minus |
chr2L | 23010047 | chr2L | 2330362..2330518 | 411..255 | 785 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2308797..2309293 | 1624..1128 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 2310126..2310451 | 943..618 | 1630 | 100 | Minus |
2L | 23513712 | 2L | 2357078..2357332 | 255..1 | 1275 | 100 | Minus |
2L | 23513712 | 2L | 2310662..2310871 | 619..410 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 1130..934 | 955 | 99 | Minus |
2L | 23513712 | 2L | 2330655..2330811 | 411..255 | 785 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2308797..2309293 | 1624..1128 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 2310126..2310451 | 943..618 | 1630 | 100 | Minus |
2L | 23513712 | 2L | 2357078..2357332 | 255..1 | 1275 | 100 | Minus |
2L | 23513712 | 2L | 2310662..2310871 | 619..410 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 1130..934 | 955 | 98.9 | Minus |
2L | 23513712 | 2L | 2330655..2330811 | 411..255 | 785 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2308550..2309042 | 1131..1623 | 98 | <- | Minus |
chr2L | 2309268..2309454 | 944..1130 | 100 | <- | Minus |
chr2L | 2309878..2310201 | 620..943 | 98 | <- | Minus |
chr2L | 2310414..2310622 | 411..619 | 99 | <- | Minus |
chr2L | 2330363..2330517 | 256..410 | 100 | <- | Minus |
chr2L | 2356789..2357043 | 1..255 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..897 | 642..1538 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..897 | 642..1538 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RB | 1..897 | 642..1538 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..897 | 642..1538 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RB | 1..897 | 642..1538 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..1623 | 1..1623 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..1623 | 1..1623 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 25..1647 | 1..1623 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 1..1623 | 1..1623 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9967-RA | 25..1647 | 1..1623 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2310126..2310449 | 620..943 | 100 | <- | Minus |
2L | 2310662..2310870 | 411..619 | 100 | <- | Minus |
2L | 2330656..2330810 | 256..410 | 100 | <- | Minus |
2L | 2357078..2357332 | 1..255 | 100 | Minus | |
2L | 2308798..2309290 | 1131..1623 | 100 | <- | Minus |
2L | 2309516..2309702 | 944..1130 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2310126..2310449 | 620..943 | 100 | <- | Minus |
2L | 2310662..2310870 | 411..619 | 100 | <- | Minus |
2L | 2330656..2330810 | 256..410 | 100 | <- | Minus |
2L | 2357078..2357332 | 1..255 | 100 | Minus | |
2L | 2308798..2309290 | 1131..1623 | 100 | <- | Minus |
2L | 2309516..2309702 | 944..1130 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2310126..2310449 | 620..943 | 100 | <- | Minus |
2L | 2310662..2310870 | 411..619 | 100 | <- | Minus |
2L | 2330656..2330810 | 256..410 | 100 | <- | Minus |
2L | 2357078..2357332 | 1..255 | 100 | Minus | |
2L | 2308798..2309290 | 1131..1623 | 100 | <- | Minus |
2L | 2309516..2309702 | 944..1130 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2308798..2309290 | 1131..1623 | 100 | <- | Minus |
arm_2L | 2309516..2309702 | 944..1130 | 100 | <- | Minus |
arm_2L | 2310126..2310449 | 620..943 | 100 | <- | Minus |
arm_2L | 2310662..2310870 | 411..619 | 100 | <- | Minus |
arm_2L | 2330656..2330810 | 256..410 | 100 | <- | Minus |
arm_2L | 2357078..2357332 | 1..255 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2330656..2330810 | 256..410 | 100 | <- | Minus |
2L | 2309516..2309702 | 944..1130 | 100 | <- | Minus |
2L | 2310126..2310449 | 620..943 | 100 | <- | Minus |
2L | 2310662..2310870 | 411..619 | 100 | <- | Minus |
2L | 2308798..2309290 | 1131..1623 | 100 | <- | Minus |
2L | 2357078..2357332 | 1..255 | 100 | Minus |
Translation from 641 to 1537
> LD25280.pep MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15281-PA | 293 | GF15281-PA | 1..293 | 1..298 | 1192 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24528-PA | 302 | GG24528-PA | 1..302 | 1..298 | 1256 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13786-PA | 303 | GH13786-PA | 18..303 | 12..298 | 1006 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9967-PC | 298 | CG9967-PC | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PA | 298 | CG9967-PA | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PB | 298 | CG9967-PB | 1..298 | 1..298 | 1615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17189-PA | 311 | GI17189-PA | 24..311 | 12..298 | 946 | 66.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19402-PA | 306 | GL19402-PA | 13..306 | 13..298 | 1066 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22155-PA | 305 | GA22155-PA | 13..305 | 13..298 | 1083 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18237-PA | 236 | GM18237-PA | 1..236 | 1..298 | 1164 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22842-PA | 300 | GD22842-PA | 1..300 | 1..298 | 1255 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22259-PA | 293 | GJ22259-PA | 13..293 | 5..298 | 1019 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14985-PA | 289 | GK14985-PA | 3..289 | 6..298 | 1116 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15129-PA | 301 | GE15129-PA | 1..301 | 1..298 | 1460 | 95.3 | Plus |
Translation from 641 to 1537
> LD25280.hyp MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9967-PC | 298 | CG9967-PC | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PA | 298 | CG9967-PA | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PB | 298 | CG9967-PB | 1..298 | 1..298 | 1615 | 100 | Plus |