Clone LD25280 Report

Search the DGRC for LD25280

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:252
Well:80
Vector:pOT2
Associated Gene/TranscriptCG9967-RA
Protein status:LD25280.pep: gold
Preliminary Size:1696
Sequenced Size:1650

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9967 2001-09-19 Blastp of sequenced clone
CG9967 2003-01-01 Sim4 clustering to Release 3
CG9967 2008-04-29 Release 5.5 accounting
CG9967 2008-08-15 Release 5.9 accounting
CG9967 2008-12-18 5.12 accounting

Clone Sequence Records

LD25280.complete Sequence

1650 bp (1650 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058564

> LD25280.complete
CGAATCAAAAACAACTTGCGATTGAAATCGAAGTTCGAAAAGTTAGTTGT
AGCTAACCAGCTTTGGCCAAATGGTATCAAAGAGACCTGGATCGTTGTGC
TCCGGGTTTTCCCTTCTCAAGAACCGAATCAACCGAACCAGCTAAAGTGA
ACTGAATGTCTCTTAATTGTGCAATTGTTTGTTTAAAGTGCATGTGAACA
AGATACGCTAATAAAAGTCTTCGGATCGGTGGTAAACTATAAAACTATAA
AACCGCAGCTTACATAATTAGCCTGATTAAACCAGGCCAAAGTTGGTCGG
ATGTCAAAGGGTTTTGAGTGAAAGTACAAGTGAAAGCCCGATCGCCGCCG
ACATTTTAGTGCTGCAAACCACTTTATCCCTAAAATCATAGAAGTCGGCA
CGTTGAGTTGGCCTGGCCAAAAGCCACAAGCACCAAAGGCAGCTGGCCAC
GGGGACGAGGAGAGTGGCACAATAGACAAAGTGTATCAATTATAATACGG
GCACAAGGCGAAGGATCCCCAGCCGGGGGCCAAAGGAAGGGGATCCGGGG
TCCAGTAACCAGGAGCCGAAAAGCAGGATACCAGAGTTGCAGCTAACACA
AAGAGAAAAGGAACTAAAGAGGCAACCACACTTGCAGAGCCATGTTGGCT
ACGACAAGTACAACCACAATTACCTCGGATCCGGGCATCCTCTGTTTTCA
TCACTGCAACGTGAAAGTTTTCTGCTTCACTTTGCCGCACACTTGTCCCC
ATTGCAATGCCCCACTGGACGCGGATGTGGATGCGCATGGGGATGTCGAT
GGGGATGCGGATCCGAGTGCGCAACTAGACAGGGCCGGGCCACGCCTCCT
CCTCCTGCCCTTCCGCCTGCCATATCCTTTTGTGCGGGCCACGCAGCATC
CGTGCGCCATTGTCCTGCGTCCCTCCGCCGGCGATTTCCTCAACGATTAC
AGCAACGCCACCGATTTGCATATCGCAGTGACCACATCCGGCGGCGACAT
CGTGGAGTTCGATCGCTTTGGCCTTCGCCGCCATCGGCGGGATGATAATC
CTCCGGAGTGGCGGCAGTCGCTGATGGTGGGCGATGTGCCGGAGCCGTGG
CACGACTTTTGGGACGAGGTCCTGCAGCAGATCTGCGCCCAATCGGTGCG
CTGGTCCATCGCCAGTTATGCGGAGGAGAGCCACAACTGCTACGCCTTCG
TCCTGGCCTTCCTGCAGGCCCTCGGCCACGCCCACCTGAGCGAGGCCGCC
CGCAGCAAGACCGCCTTCTGTGAGCAGTGCATTGTTCCAAGGACGACGAC
AGCGGGCAAGTACATCTCGCTGTATCGCAAAATCCGCAGGAGCGGCATCT
ACGTCCATCGCCAGCAGCCTAAAAACCGCAGTAAGCCAGCATCCGCAACT
CCTCCAAGTTCCTACCCCTCAGACTCGTGCGATGGCCTTGGCAGCAGCAA
AAAGGTCTCAAAAAAAGGATACTCCAGCAGCAGTATTACAGGACTTGCCA
ACCGCCCGCGGCCCACGCTCTGCACCATCGAAGAGTAATTAATCGATTAG
ATAGAAATTGTGTTTGCAACTTTGCAAAGACTTTAGCGTAGTTAAATTTA
ATAAATTCAGAACAAAAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD25280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-RA 1715 CG9967-RA 53..1676 1..1624 8120 100 Plus
CG9967-RB 1804 CG9967-RB 501..1714 411..1624 6070 100 Plus
CG9967-RB 1804 CG9967-RB 1..401 10..410 2005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2308550..2309045 1623..1128 2405 99 Minus
chr2L 23010047 chr2L 2309878..2310203 943..618 1570 98.8 Minus
chr2L 23010047 chr2L 2356789..2357043 255..1 1275 100 Minus
chr2L 23010047 chr2L 2310414..2310623 619..410 1035 99.5 Minus
chr2L 23010047 chr2L 2309268..2309464 1130..934 955 99 Minus
chr2L 23010047 chr2L 2330362..2330518 411..255 785 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308797..2309293 1624..1128 2485 100 Minus
2L 23513712 2L 2310126..2310451 943..618 1630 100 Minus
2L 23513712 2L 2357078..2357332 255..1 1275 100 Minus
2L 23513712 2L 2310662..2310871 619..410 1050 100 Minus
2L 23513712 2L 2309516..2309712 1130..934 955 99 Minus
2L 23513712 2L 2330655..2330811 411..255 785 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308797..2309293 1624..1128 2485 100 Minus
2L 23513712 2L 2310126..2310451 943..618 1630 100 Minus
2L 23513712 2L 2357078..2357332 255..1 1275 100 Minus
2L 23513712 2L 2310662..2310871 619..410 1050 100 Minus
2L 23513712 2L 2309516..2309712 1130..934 955 98.9 Minus
2L 23513712 2L 2330655..2330811 411..255 785 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:32:26 has no hits.

LD25280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:20 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2308550..2309042 1131..1623 98 <- Minus
chr2L 2309268..2309454 944..1130 100 <- Minus
chr2L 2309878..2310201 620..943 98 <- Minus
chr2L 2310414..2310622 411..619 99 <- Minus
chr2L 2330363..2330517 256..410 100 <- Minus
chr2L 2356789..2357043 1..255 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:51:43 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..897 642..1538 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:55 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..897 642..1538 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:04 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 1..897 642..1538 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:29 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..897 642..1538 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:43 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 1..897 642..1538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:43 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..1623 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:54 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..1623 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:04 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 25..1647 1..1623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:29 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..1623 1..1623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:43 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 25..1647 1..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:20 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2310126..2310449 620..943 100 <- Minus
2L 2310662..2310870 411..619 100 <- Minus
2L 2330656..2330810 256..410 100 <- Minus
2L 2357078..2357332 1..255 100   Minus
2L 2308798..2309290 1131..1623 100 <- Minus
2L 2309516..2309702 944..1130 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:20 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2310126..2310449 620..943 100 <- Minus
2L 2310662..2310870 411..619 100 <- Minus
2L 2330656..2330810 256..410 100 <- Minus
2L 2357078..2357332 1..255 100   Minus
2L 2308798..2309290 1131..1623 100 <- Minus
2L 2309516..2309702 944..1130 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:20 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2310126..2310449 620..943 100 <- Minus
2L 2310662..2310870 411..619 100 <- Minus
2L 2330656..2330810 256..410 100 <- Minus
2L 2357078..2357332 1..255 100   Minus
2L 2308798..2309290 1131..1623 100 <- Minus
2L 2309516..2309702 944..1130 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:04 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308798..2309290 1131..1623 100 <- Minus
arm_2L 2309516..2309702 944..1130 100 <- Minus
arm_2L 2310126..2310449 620..943 100 <- Minus
arm_2L 2310662..2310870 411..619 100 <- Minus
arm_2L 2330656..2330810 256..410 100 <- Minus
arm_2L 2357078..2357332 1..255 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:15 Download gff for LD25280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2330656..2330810 256..410 100 <- Minus
2L 2309516..2309702 944..1130 100 <- Minus
2L 2310126..2310449 620..943 100 <- Minus
2L 2310662..2310870 411..619 100 <- Minus
2L 2308798..2309290 1131..1623 100 <- Minus
2L 2357078..2357332 1..255 100   Minus

LD25280.pep Sequence

Translation from 641 to 1537

> LD25280.pep
MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG
DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL
NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP
EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS
EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA
SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*

LD25280.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15281-PA 293 GF15281-PA 1..293 1..298 1192 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24528-PA 302 GG24528-PA 1..302 1..298 1256 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13786-PA 303 GH13786-PA 18..303 12..298 1006 66.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-PC 298 CG9967-PC 1..298 1..298 1615 100 Plus
CG9967-PA 298 CG9967-PA 1..298 1..298 1615 100 Plus
CG9967-PB 298 CG9967-PB 1..298 1..298 1615 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17189-PA 311 GI17189-PA 24..311 12..298 946 66.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19402-PA 306 GL19402-PA 13..306 13..298 1066 72.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22155-PA 305 GA22155-PA 13..305 13..298 1083 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18237-PA 236 GM18237-PA 1..236 1..298 1164 77.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22842-PA 300 GD22842-PA 1..300 1..298 1255 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22259-PA 293 GJ22259-PA 13..293 5..298 1019 67 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14985-PA 289 GK14985-PA 3..289 6..298 1116 70.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15129-PA 301 GE15129-PA 1..301 1..298 1460 95.3 Plus

LD25280.hyp Sequence

Translation from 641 to 1537

> LD25280.hyp
MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG
DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL
NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP
EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS
EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA
SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*

LD25280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-PC 298 CG9967-PC 1..298 1..298 1615 100 Plus
CG9967-PA 298 CG9967-PA 1..298 1..298 1615 100 Plus
CG9967-PB 298 CG9967-PB 1..298 1..298 1615 100 Plus