Clone LD25288 Report

Search the DGRC for LD25288

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:252
Well:88
Vector:pOT2
Associated Gene/TranscriptCG10880-RA
Protein status:LD25288.pep: gold
Preliminary Size:1448
Sequenced Size:1294

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10880 2001-01-01 Release 2 assignment
CG10880 2001-09-19 Blastp of sequenced clone
CG10880 2003-01-01 Sim4 clustering to Release 3
CG10880 2008-04-29 Release 5.5 accounting
CG10880 2008-08-15 Release 5.9 accounting
CG10880 2008-12-18 5.12 accounting

Clone Sequence Records

LD25288.complete Sequence

1294 bp (1294 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058565

> LD25288.complete
CCGATTCTTAACAGCGAATCTAATCTAAGCGCAATTGCATTTTAATGGTA
ATTTAATTGCCATTATTGACAGAGTTTATGGCAACGAAGACGCACACAAT
GTCCGCGGGGGATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCA
TTCAGTTTGAGGCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAA
TTGGACAGTGCTTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAA
GGCTCACAGGGACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGT
GCTCTACCAGCGTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTT
ATTGCCGAGAACATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGA
TTTGGAACTCTTCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGG
AGATGTTCGAAAAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGC
AACCATCCTGAAGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGG
CAACCACTTTATGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGC
TGCAGGTCTCCACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCC
AGCTGCTTTGCCCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGA
GATTGCCAAGGATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGA
GCCAGAAGAAAGTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGC
CTGGCTACTATTTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGC
CTGGTTCTGGTGGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGA
TCTCCGTTCAGACTTAAAAAAAACGCACAACGATGCATTTAATAGTTACA
TTCCGATTTTCTCATAGGACCTAAGTTTATAGAATTTACTTATTACTTCT
TTAAGCATTCGCTTAATCTAAAGCTGTAATGAAGTTTTACTGCCCAACAT
GAACATTTGATAGAAACCATATGTTGTATTAAGTTGAAAAATTGTTTAAT
TTATTGCCTTAAACTGACTTCTTCGGCAAGGAGAAGAAACCCCAGATGGA
CATAGGAGTCCACGTGCTCGGGAAATTCCCATAAAGTTGTGTGCGCAATG
AGCTGGCTTCTTTCAGTCGAGTGAGCAATGTTACCTATAAGAAAAGTAAC
ATGATTATATTTAAGATGGTAAATCGAAAAAAAAAAAAAAAAAA

LD25288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-RA 1364 CG10880-RA 40..1317 1..1278 6390 100 Plus
CG10880.b 1312 CG10880.b 40..1312 1..1276 6310 99.7 Plus
CG10880.a 1270 CG10880.a 1..1270 1..1276 6265 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2215244..2216031 788..1 3865 99.4 Minus
chr2L 23010047 chr2L 2214701..2215190 1276..787 2360 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2215515..2216302 788..1 3940 100 Minus
2L 23513712 2L 2214970..2215461 1278..787 2460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2215515..2216302 788..1 3940 100 Minus
2L 23513712 2L 2214970..2215461 1278..787 2460 100 Minus
Blast to na_te.dros performed 2019-03-16 02:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 415..461 1071..1115 112 76.6 Plus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 3195..3241 1071..1115 112 76.6 Plus

LD25288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:18:01 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2214701..2215188 789..1276 98 <- Minus
chr2L 2215244..2216031 1..788 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:17 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 78..917 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:56 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 78..917 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:34 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 78..917 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:30 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 78..917 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:03:46 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..840 78..917 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:25 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..1272 5..1276 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:56 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 3..1278 1..1276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:34 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 10..1285 1..1276 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:31 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 1..1272 5..1276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:03:46 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
CG10880-RA 10..1285 1..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:01 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2214972..2215459 789..1276 100 <- Minus
2L 2215515..2216302 1..788 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:01 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2214972..2215459 789..1276 100 <- Minus
2L 2215515..2216302 1..788 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:01 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2214972..2215459 789..1276 100 <- Minus
2L 2215515..2216302 1..788 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:34 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2214972..2215459 789..1276 100 <- Minus
arm_2L 2215515..2216302 1..788 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:17 Download gff for LD25288.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2215515..2216302 1..788 100   Minus
2L 2214972..2215459 789..1276 100 <- Minus

LD25288.hyp Sequence

Translation from 77 to 916

> LD25288.hyp
MATKTHTMSAGDVPLVAMAKVPPTIQFEATKNFHSHTEQKELDSAFLGYN
RRPWVRQKAHRDTRREREILNGLLCSTSVETDYASTCVDKLIAENINYLD
LASLTDEDLELFGFKCRKQRQQLLEMFEKIPNQNPSYEYICNHPEAENYN
NQILGNAGNHFMSLRASLAATNYKLQVSTPEDVVVGDKRYASCFAQETLK
SVNQITEEIAKDLAKIEANAQNARSQKKVQGNESHKKKKWSLATILYYTT
LAVGFSCAWFWWWTKFRSAPRLERISVQT*

LD25288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-PA 279 CG10880-PA 1..279 1..279 1468 100 Plus
CG10880-PB 278 CG10880-PB 1..278 1..279 1451 99.6 Plus

LD25288.pep Sequence

Translation from 77 to 916

> LD25288.pep
MATKTHTMSAGDVPLVAMAKVPPTIQFEATKNFHSHTEQKELDSAFLGYN
RRPWVRQKAHRDTRREREILNGLLCSTSVETDYASTCVDKLIAENINYLD
LASLTDEDLELFGFKCRKQRQQLLEMFEKIPNQNPSYEYICNHPEAENYN
NQILGNAGNHFMSLRASLAATNYKLQVSTPEDVVVGDKRYASCFAQETLK
SVNQITEEIAKDLAKIEANAQNARSQKKVQGNESHKKKKWSLATILYYTT
LAVGFSCAWFWWWTKFRSAPRLERISVQT*

LD25288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15298-PA 270 GF15298-PA 1..270 8..279 922 63.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24547-PA 278 GG24547-PA 1..266 8..273 1232 85 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11469-PA 264 GH11469-PA 1..263 8..278 581 48.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10880-PA 279 CG10880-PA 1..279 1..279 1468 100 Plus
CG10880-PB 278 CG10880-PB 1..278 1..279 1451 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16918-PA 269 GI16918-PA 1..268 8..278 688 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19415-PA 259 GL19415-PA 6..259 13..279 611 44.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10615-PA 259 GA10615-PA 6..259 13..279 617 44.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18255-PA 272 GM18255-PA 1..272 8..279 1395 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22864-PA 272 GD22864-PA 1..272 8..279 1406 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17210-PA 261 GJ17210-PA 1..260 8..278 771 55.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15142-PA 265 GK15142-PA 12..257 21..271 547 44.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15198-PA 272 GE15198-PA 1..272 8..279 1317 88.2 Plus