Clone LD25351 Report

Search the DGRC for LD25351

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:253
Well:51
Vector:pOT2
Associated Gene/TranscriptPapss-RA
Protein status:LD25351.pep: gold
Preliminary Size:2368
Sequenced Size:2400

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8363 2001-01-01 Release 2 assignment
CG8363 2001-07-04 Blastp of sequenced clone
CG8363 2003-01-01 Sim4 clustering to Release 3
Paps 2008-04-29 Release 5.5 accounting
Papss 2008-08-15 Release 5.9 accounting
Papss 2008-12-18 5.12 accounting

Clone Sequence Records

LD25351.complete Sequence

2400 bp (2400 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051724

> LD25351.complete
CGTATCCCAAATTTAAACGTTTGCTTGCGATATAACTAGACTTTAAGCTA
TTTAGTGCAATAGTCCAGCTGCTGCGAGTGCTACACCTATTTGGAAAACA
TTTTGTTTGGAATTGCTTGGCAGGAGGACGTGCTACTTTGGTGGGTCATA
ATAGGCGAGCACAGTTCCCCTCGAGAAATGAGTGAAGTTCCGGAGAGCAG
CAAAAAGCGTCAAAAGACGTGCCTACAGGTGGCGACGAATGTGACCGAGC
AAAAGCACCATGTCACCAGGGAGACGCGCGGCAAGAATTTGGGACTCTGT
CGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGG
AAAGACCTCGATTGCCTTCGAACTGGAGGCGTACCTGGTATCCCGGGGCA
TTCCGGCCTACGGGTTGGACGGCGACAACATTCGCACCGGACTGAACAAG
AACCTGGGCTTCACGCCCGCCGATCGCGAGGAAAACATTCGCCGCGTGGG
CGAGGTGGCCAAGTTGTTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCT
TCGTTTCGCCCTTCGCCGACGATCGTGAGATGGCGCGCAAGATCCACAAG
GATGCGGGTCTGAAGTTCTATGAGATATTCGTGGACACACCGCTGGATGT
GTGCGAAACCCGGGACGTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCG
TAATCAAAGGATTCACGGGCATTACGCAGGAGTACGAGCGACCCCAGATG
CCGGAGCTGGTGGTCAACACGCACGGCTACACGGTGCGCGAGTCCACTCA
GAAGCTGGTGACGCTGCTCGAACAGGAGGGCATTATTCCGCGCTCGCTGC
GCGACGTAGACCTGCTGCCGGAGCTTTATCCCAGCGAATCCATTGCCACG
GAGGCACTGCGTCACGAGGCCGAGTCGCTGCAAGCCATCGAAATCAGCAC
CGTGGAGCTGCAGTGGGTGCAAGTACTGGCCGAGGGATGGGCATATCCAC
TGCGCGGCTTCATGCGCGAGGATGAGTACCTGCAGACGCTGCACTTCAAC
ACACTTCAGAGCGGCATGGACGGTTCCTATCGCGAGAACCACTCGGTGCC
CATTGTTTTGAGCGCCACGCAGGCGGACAAGGATCGTCTGGACGGCTGCT
CCTCGCTGACTCTCAAATACCAAGGCAAGGCGGTAGCCATTCTGCGGCGT
CCCGAGTTCTACTTTCAGCGTAAGGAGGAGCGGCTGGCCCGCCAGTTCGG
CACCAGCAATCCCAATCACCCGTACAGTAAGCAGGTCTACGAGTCCGGGG
ATTATTTGGTCGGTGGCGATCTGGCAGTGATCGAACGTATCCGCTGGGAG
GACGGACTGGATCAGTACAGGCTGACTCCCAACGAGTTAAGGCGCCGCTT
TAAGGAGCTGAATGCCGACGCCATCTTCGCCTTTCAGTTGCGCAATCCCA
TCCACAACGGCCATGCCCTGCTCATGCAAGACACTCGCCGCCAGCTGCTG
GAGCGCGGCTTCAAGCAGCCAGTGCTGCTGCTGCATCCTCTGGGTGGCTG
GACCAAGGACGACGATGTGCCGCTGGATGTGCGCATGAAGCAGCACCAGG
CCGTGCTCGACGCAGGTGTCTTGCGACGAGAGGACACAGTGCTGGCCATC
TTCCCCTCGCCAATGATGTACGCCGGTCCCACGGAGGTGCAGTGGCACGC
AAAGGCGCGCATGAACGCCGGTGCGAACTTCTACATTGTAGGCCGTGATC
CGGCTGGCATGCCGCATCCGGCCAAGGAAACTTATCCGGATGGAAACCTA
TACGATGCCACCCATGGTGCGCGAGTGCTTAAGATGGCCCAGGGACTAGA
CAGCATGGAGATCCTGCCCTTCCGTGTTGCTGCCTATGACAAGAGCGCCA
GTAGAATGGCCTTCTTCGAGCCCAAGAGGAAGGATGAGTTTGAGTTCATC
TCGGGAACCAAGATGCGCACCCTGGCCAAAACGGGAGCCAGTCCGCCGGA
TGGCTTCATGGAACCGGAGGCTTGGCGCATCCTGGCCACCTACTACCAGA
ACCTGCCGCAGTCGTAACCCGCTGCTCACACTCGATCCGCAACGTGCAAT
TCCTCCTAGTTATAGCTCGTGTGCTTATTATACATAAATATTTCAAGCTA
AAGGCGCTTACCACTTACCACATCTTTTTTCCATTGTTCTAAGCCGAAAT
CCGTGGCTGTCCCCGTGTGTGAATGTTGTGCTCCTCCTAACTAAATGTTC
GTATCGTACAATCTACTTGTATCTACACTTAAGTCACCCAATTCTTTTTA
TCTTAAGCAAAATATCGTGCAGCTATTTTGTGGACGGTTTTTAATACATA
TATAAATAATAAAATAGAAAATTACTTATTGAAAAAAAAAAAAAAAAAAA

LD25351.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Papss-RA 2495 Papss-RA 111..2493 1..2383 11915 100 Plus
Papss.b 2658 Papss.b 495..2658 219..2382 10820 100 Plus
Papss.c 2643 Papss.c 480..2643 219..2382 10820 100 Plus
Papss.c 2643 Papss.c 33..252 1..220 1100 100 Plus
Papss.b 2658 Papss.b 148..267 101..220 600 100 Plus
Papss.b 2658 Papss.b 33..133 1..101 505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19848178..19849704 334..1860 7590 99.8 Plus
chr3L 24539361 chr3L 19849765..19850287 1859..2381 2615 100 Plus
chr3L 24539361 chr3L 19834875..19834993 101..219 595 100 Plus
chr3L 24539361 chr3L 19847741..19847857 219..335 585 100 Plus
chr3L 24539361 chr3L 19834692..19834791 1..100 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19858814..19860340 334..1860 7635 100 Plus
3L 28110227 3L 19860403..19860927 1859..2383 2625 100 Plus
3L 28110227 3L 19845512..19845630 101..219 595 100 Plus
3L 28110227 3L 19858377..19858493 219..335 585 100 Plus
3L 28110227 3L 19845329..19845428 1..100 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19851914..19853440 334..1860 7635 100 Plus
3L 28103327 3L 19853503..19854027 1859..2383 2625 100 Plus
3L 28103327 3L 19838612..19838730 101..219 595 100 Plus
3L 28103327 3L 19851477..19851593 219..335 585 100 Plus
3L 28103327 3L 19838429..19838528 1..100 500 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:08:57 has no hits.

LD25351.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:10:03 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19834692..19834791 1..100 100 -> Plus
chr3L 19834875..19834993 101..219 100 -> Plus
chr3L 19847742..19847856 220..334 100 -> Plus
chr3L 19848179..19849704 335..1860 99 -> Plus
chr3L 19849767..19850242 1861..2336 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:28 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RB 1..1890 178..2067 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:52 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RB 1..1890 178..2067 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:06:36 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 1..1890 178..2067 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:32 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RB 1..1890 178..2067 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:57:49 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 1..1890 178..2067 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:28 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 33..2413 1..2381 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:52 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 33..2413 1..2381 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:36 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 37..2417 1..2381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:33 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 33..2413 1..2381 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:57:49 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
Papss-RA 37..2417 1..2381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:03 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19845329..19845428 1..100 100 -> Plus
3L 19845512..19845630 101..219 100 -> Plus
3L 19858378..19858492 220..334 100 -> Plus
3L 19858815..19860340 335..1860 100 -> Plus
3L 19860405..19860925 1861..2381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:03 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19845329..19845428 1..100 100 -> Plus
3L 19845512..19845630 101..219 100 -> Plus
3L 19858378..19858492 220..334 100 -> Plus
3L 19858815..19860340 335..1860 100 -> Plus
3L 19860405..19860925 1861..2381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:03 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19845329..19845428 1..100 100 -> Plus
3L 19845512..19845630 101..219 100 -> Plus
3L 19858378..19858492 220..334 100 -> Plus
3L 19858815..19860340 335..1860 100 -> Plus
3L 19860405..19860925 1861..2381 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:36 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19838429..19838528 1..100 100 -> Plus
arm_3L 19838612..19838730 101..219 100 -> Plus
arm_3L 19851478..19851592 220..334 100 -> Plus
arm_3L 19851915..19853440 335..1860 100 -> Plus
arm_3L 19853505..19854025 1861..2381 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:03 Download gff for LD25351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19838429..19838528 1..100 100 -> Plus
3L 19838612..19838730 101..219 100 -> Plus
3L 19851478..19851592 220..334 100 -> Plus
3L 19851915..19853440 335..1860 100 -> Plus
3L 19853505..19854025 1861..2381 100   Plus

LD25351.pep Sequence

Translation from 177 to 2066

> LD25351.pep
MSEVPESSKKRQKTCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTVW
LTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADR
EENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYEI
FVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTHG
YTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAES
LQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDGS
YRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRKE
ERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRLT
PNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPVL
LLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYAG
PTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGARV
LKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTLA
KTGASPPDGFMEPEAWRILATYYQNLPQS*

LD25351.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23598-PA 629 GF23598-PA 1..629 1..629 3291 96.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16064-PA 629 GG16064-PA 1..628 1..628 3352 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14663-PA 629 GH14663-PA 1..629 1..629 3121 91.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
Papss-PG 629 CG8363-PG 1..629 1..629 3289 100 Plus
Papss-PB 629 CG8363-PB 1..629 1..629 3289 100 Plus
Papss-PA 629 CG8363-PA 1..629 1..629 3289 100 Plus
Papss-PC 629 CG8363-PC 1..629 1..629 3289 100 Plus
Papss-PD 657 CG8363-PD 35..657 7..629 3228 99 Plus
Papss-PH 630 CG8363-PH 13..630 12..629 3223 99.5 Plus
Papss-PF 630 CG8363-PF 13..630 12..629 3223 99.5 Plus
Papss-PE 630 CG8363-PE 13..630 12..629 3223 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11647-PA 629 GI11647-PA 1..629 1..629 3120 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15741-PA 625 GL15741-PA 1..625 1..629 3111 91.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21020-PA 629 GA21020-PA 1..629 1..629 3187 93.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19669-PA 533 GM19669-PA 94..487 16..409 2096 99.5 Plus
Dsec\GM19674-PA 77 GM19674-PA 1..77 553..629 410 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14833-PA 595 GD14833-PA 1..595 1..629 3145 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11328-PA 630 GJ11328-PA 13..630 12..629 3064 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16974-PA 658 GK16974-PA 39..658 10..629 3135 92.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19629-PA 630 GE19629-PA 13..629 12..628 3300 99.4 Plus
Dyak\GE19630-PA 315 GE19630-PA 20..314 334..628 1597 99.7 Plus

LD25351.hyp Sequence

Translation from 177 to 2066

> LD25351.hyp
MSEVPESSKKRQKTCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTVW
LTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADR
EENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYEI
FVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTHG
YTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAES
LQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDGS
YRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRKE
ERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRLT
PNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPVL
LLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYAG
PTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGARV
LKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTLA
KTGASPPDGFMEPEAWRILATYYQNLPQS*

LD25351.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Papss-PG 629 CG8363-PG 1..629 1..629 3289 100 Plus
Papss-PB 629 CG8363-PB 1..629 1..629 3289 100 Plus
Papss-PA 629 CG8363-PA 1..629 1..629 3289 100 Plus
Papss-PC 629 CG8363-PC 1..629 1..629 3289 100 Plus
Papss-PD 657 CG8363-PD 35..657 7..629 3228 99 Plus