Clone LD25551 Report

Search the DGRC for LD25551

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:255
Well:51
Vector:pOT2
Associated Gene/Transcriptdik-RA
Protein status:LD25551.pep: gold
Sequenced Size:2699

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
dik 2008-04-29 Picked prior to 5.5
dik 2008-08-15 Release 5.9 accounting
dik 2008-12-18 5.12 accounting

Clone Sequence Records

LD25551.complete Sequence

2699 bp assembled on 2008-05-14

GenBank Submission: BT032840

> LD25551.complete
CACACTGCCATATCGACGCAAAACAAATTGCGATTTTCACAACACAAGAA
AAGCAGGAAAAACAGCAAATATATCCGCAATCTAGCTAACACACAGGTCC
CCAACCAGTCGCAGTCGCGTTCCATGAGTGCGAACCTGAAGAATATCAAA
CTGGCCCACTTCAGTGGTTCGCTCGGTTCCGGTGGCTTTGGCATCTCTGC
GTCATCCGGAGGAGCTGGAAAACTGCCCACAAATGGCACAGGTGGCGGCA
AATCCGCCCCAACGAGCACCTTCCTGGACTCCGAGGTGCTGGCCACGCCC
GGCGGCGTCGTTATACCAATAATTCGCACTCGGGACGTGCCCAAATTGCT
GCCCACCATTGCAGCGGCACTGCAGCGTCCGGCGGATGATCATTTGGCGG
CCGAGGATCTGGATGCAGTGCAACTGGAGCTGGAACAGATGCTCTCCAAT
GTGGCGCTGCGCACGCGCGTCCTGAAAGCGGAGTATGATAGCCTCGACAA
GGATGAGAAGCGCCAGGATCGAAGAAAGCTCGACCGTGTGCCTGGATCGC
CACCTTGTCCGGCTAGCATGCTCAACGGCTTGCTGGGCATCGGCAGCAAC
TCGTCGACGAGTCTGGGCAGCCCGCTGGGCGGCGGAGGCGCCTCATCCTC
TAGCCAATCGAAGCGCAAGCGGGATGAGCCAACGGGCGTGCGCAAAAAGC
ACTCTTCGATGACCATTCTCAAGCAACAGGGCGTTTCCGGCGGCACCTCG
AAGCACCAGGCCAAGAACAGCCCCTTGGTCGTGCACACCGACGACAGCAT
GGACTATCTGCCCACACTGGCGGCCGCCAATGCCTCTGGATCCGTGCTGC
CGCATCACCAGCCGCTGCCGCAGCTACCGAAAATGACGGTGCCCAAGAAC
GATACGCCCAACAAGTTCTGGCTATCCGTGGAGCCCTACTGCATGCCTCT
AACCAACGAGGATCTGCGCCTAATCGATGACCTGCTGGAGCAGTATTGGG
GTCCACTGGTGCCGCCAGTGCCACCTCTGGGTCCCCACTACTCCACAGTT
TGGGCCCAGGAGGATATAAAGGCGCTGCAGCCGGGCGGAGCTCGAATTAA
ATCGAACAATTCCAGCGGAATGCTCAAAAAGGCCGAAGGCATGGTGGATG
AGAGCATCACTGGTCCACTCACCCAGCGTTTGGTGTCCGCCTTAATGGAG
GAGTCCCTGATGACGCTGCCCAGCGAACAGGCCGCCGTGGGCGAGCACAG
CAACAGCACCACGAGCAGCAGCAACGAGAACACCCACTCGCACTCCTCGT
CCTCGGCAAATGCTGCCGCAGCAGCTGCTTCCGGGAACTTTCGATCTCTC
GCCATGATGAAACACGGCGTGGGCATCGAACAGCGCCTGAAGAAGACTCT
CATCGAGAACGGACTGATCGATGCCAGTGAGTTTGCGGCCCACGAAGACG
TGGACGAGGTGCTGATGGAGATCAAGCGCGTAACGACCGAAATCAGCACC
ATTTCGCAGTTTAACAGCGAGGAATTGAAGCGACTGCGTGCCGTTGCCAG
TGAGGAAATCAAGCGCATTGCCATCAAACAGAAATTGGACATGGTGGACC
AGGAGATACTCGAGTGCTACAAGCGAATGCTGCAGTATCGGGCCAAGCGC
AAGGGCCACACCATCGAGGAGAAGCAGGAGATACTGCGGCTGACCAACGA
GCAGCGCCTACTTGCGGATCAGCTGGAGCGTATGCAGATGCATCTGCCCT
GCATCGGCGGCTCCGGCAACTCCCTGTTAGAGCCAAAGATGTAGGACAGG
AGCCTGGCCTGGGGCTGGTGCCAGCTAATGGCCATGCATCAGGCAAAGAG
GCAGGTCCGCGACGCTAGCCTCAAGCTGCAGTGCGTCTGAAGGAGCTGCT
CCTCCTTACTCGCCACTCCTTTCATTTCGCCAGACTGTAAATTAGCCACG
CTATTCGACACGTACACGTAGCCTCTAGTGTCCGCAATCCAAGTTGTGGA
CGTTTTGGGAAGATGCGCTCATGGTGGCGGAAAATGTTTTGCATAAGTTT
TCCTCGAGTTTTGGCATTCGTTTTCCCCAAATCGAACGCCACTTTTGAGT
CGTTTTCGACTAGCTTCCAAACCCGTATTCTTATCTTCGTCACCAGACTG
TACATTAACAAAGATACATTAGCTCATAGAATGTAGTGTTCAAGATTAAA
GTGAAATTAATTATTTAGATAAGATCTTCAAGTGGCGGAGAGTAGCGTTT
GCGTATTTTAAACTGTTCTTTTACAAAATCATAATTTCCCTTTCCTTGCT
TAGTAACGTATTCCGTATTCTGTAAGCCTACAGTTTTTTGCCAATTTGTT
TGTAATTGCCTGAAAATTAAATGGATATCCGTAGATTTTACATGCTAAAT
GCTAAATTTGATTTTGTGTACATAAAAGTGGAGGGTGAGATTCGCATTAT
TCGCTAAATGAACTGAAAAACTTTCCGCTACTGGAATTTCCCAAAATTTT
ACGAGCACGTTGTTTTCCTCATGTCTTTCGCAACTATAAATATTGATTCA
CCCTATTTAACACTCCCAAATACATACACTTTGTATAGCTTAAGTTATCG
CGCGGCAATAAAGTCGTCACTATCGAGAGTAAAAAAAAAAAAAAAAAAAA
AAAAAATAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

LD25551.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
dik-RA 2664 dik-RA 32..2664 1..2633 13165 100 Plus
CG7536-RB 2986 CG7536-RB 126..181 2633..2578 280 100 Minus
CG7536.c 3485 CG7536.c 112..167 2633..2578 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17975114..17977746 1..2633 13165 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18085789..18088421 1..2633 13165 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18093887..18096519 1..2633 13165 100 Plus
Blast to na_te.dros performed 2019-03-16 01:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2475..2567 1236..1326 136 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6857 1244..1325 136 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6890 1244..1325 136 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6818 1244..1325 135 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6839 1244..1328 133 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1578 1242..1284 125 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2400 1244..1287 123 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1116..1154 1244..1281 120 82.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2466 1247..1328 115 61.6 Plus
TART-A 13424 TART-A 13424bp 10448..10496 1335..1285 115 72.5 Minus

LD25551.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:19 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17975114..17977743 1..2630 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:30 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 1..1671 124..1794 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:55:15 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 1..1671 124..1794 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:21 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RC 1..1767 124..1890 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:54:20 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 1..1671 124..1794 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:29:31 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RC 1..1767 124..1890 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:19:06 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 32..2661 1..2630 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:55:15 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 32..2661 1..2630 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:21 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 32..2661 1..2630 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:54:21 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 32..2661 1..2630 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:29:31 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
dik-RA 29..2658 1..2630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:19 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
X 18085789..18088418 1..2630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:19 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
X 18085789..18088418 1..2630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:19 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
X 18085789..18088418 1..2630 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:21 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17979822..17982451 1..2630 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:32:19 Download gff for LD25551.complete
Subject Subject Range Query Range Percent Splice Strand
X 18093887..18096516 1..2630 100   Plus

LD25551.pep Sequence

Translation from 0 to 1793

> LD25551.pep
HTAISTQNKLRFSQHKKSRKNSKYIRNLANTQVPNQSQSRSMSANLKNIK
LAHFSGSLGSGGFGISASSGGAGKLPTNGTGGGKSAPTSTFLDSEVLATP
GGVVIPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSN
VALRTRVLKAEYDSLDKDEKRQDRRKLDRVPGSPPCPASMLNGLLGIGSN
SSTSLGSPLGGGGASSSSQSKRKRDEPTGVRKKHSSMTILKQQGVSGGTS
KHQAKNSPLVVHTDDSMDYLPTLAAANASGSVLPHHQPLPQLPKMTVPKN
DTPNKFWLSVEPYCMPLTNEDLRLIDDLLEQYWGPLVPPVPPLGPHYSTV
WAQEDIKALQPGGARIKSNNSSGMLKKAEGMVDESITGPLTQRLVSALME
ESLMTLPSEQAAVGEHSNSTTSSSNENTHSHSSSSANAAAAAASGNFRSL
AMMKHGVGIEQRLKKTLIENGLIDASEFAAHEDVDEVLMEIKRVTTEIST
ISQFNSEELKRLRAVASEEIKRIAIKQKLDMVDQEILECYKRMLQYRAKR
KGHTIEEKQEILRLTNEQRLLADQLERMQMHLPCIGGSGNSLLEPKM*

LD25551.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19367-PA 575 GF19367-PA 1..551 42..582 2119 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19146-PA 556 GG19146-PA 1..556 42..597 2508 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12450-PA 606 GH12450-PA 92..606 94..593 1614 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ada3-PC 588 CG7098-PC 1..556 42..597 2821 100 Plus
Ada3-PA 556 CG7098-PA 1..556 42..597 2821 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14681-PA 555 GI14681-PA 1..546 42..580 1719 69.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14943-PA 560 GL14943-PA 1..553 42..588 1802 67.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20099-PA 561 GA20099-PA 1..557 42..592 1787 66.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22876-PA 532 GM22876-PA 18..532 71..597 2155 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16588-PA 551 GJ16588-PA 66..543 93..580 1764 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25079-PA 548 GK25079-PA 1..548 42..597 1557 61.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17706-PA 556 GE17706-PA 1..556 42..597 2532 96.2 Plus

LD25551.hyp Sequence

Translation from 0 to 1793

> LD25551.hyp
HTAISTQNKLRFSQHKKSRKNSKYIRNLANTQVPNQSQSRSMSANLKNIK
LAHFSGSLGSGGFGISASSGGAGKLPTNGTGGGKSAPTSTFLDSEVLATP
GGVVIPIIRTRDVPKLLPTIAAALQRPADDHLAAEDLDAVQLELEQMLSN
VALRTRVLKAEYDSLDKDEKRQDRRKLDRVPGSPPCPASMLNGLLGIGSN
SSTSLGSPLGGGGASSSSQSKRKRDEPTGVRKKHSSMTILKQQGVSGGTS
KHQAKNSPLVVHTDDSMDYLPTLAAANASGSVLPHHQPLPQLPKMTVPKN
DTPNKFWLSVEPYCMPLTNEDLRLIDDLLEQYWGPLVPPVPPLGPHYSTV
WAQEDIKALQPGGARIKSNNSSGMLKKAEGMVDESITGPLTQRLVSALME
ESLMTLPSEQAAVGEHSNSTTSSSNENTHSHSSSSANAAAAAASGNFRSL
AMMKHGVGIEQRLKKTLIENGLIDASEFAAHEDVDEVLMEIKRVTTEIST
ISQFNSEELKRLRAVASEEIKRIAIKQKLDMVDQEILECYKRMLQYRAKR
KGHTIEEKQEILRLTNEQRLLADQLERMQMHLPCIGGSGNSLLEPKM*

LD25551.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
dik-PC 588 CG7098-PC 1..556 42..597 2821 100 Plus
dik-PA 556 CG7098-PA 1..556 42..597 2821 100 Plus