Clone LD25644 Report

Search the DGRC for LD25644

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:256
Well:44
Vector:pOT2
Associated Gene/Transcripttadr-RB
Protein status:LD25644.pep: wuzgold
Sequenced Size:2672

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9264 2002-11-12 Blastp of sequenced clone
CG9264 2003-01-01 Sim4 clustering to Release 3
CG9264 2008-04-29 Release 5.5 accounting
CG9264 2008-08-15 Release 5.9 accounting
CG9264 2008-12-18 5.12 accounting

Clone Sequence Records

LD25644.complete Sequence

2672 bp (2672 high quality bases) assembled on 2002-11-12

GenBank Submission: BT001489

> LD25644.complete
AAATGGTGTATGGCTGGCCGTTCTTAAAGATTTCGTCACATCTTCGGATT
GCATAATAGGCAAATTTTTGTTATTTGACTTGATATCGTTTGTTTTGTAT
ACGTGCGTTTTTTAGACTTCGATTTGCATTTTGAGCAAGAAGTCATGCGG
GTCAAGAAACTGATAAAAATGTTTAAGGCCACTTGCGGAATTATGTGAGC
ACTTTTGGGCACAAAAATAAAAAAAAAATTCTTTCACTTTCTATGCTTAT
ATTAAACATACTTAACTCCACTTATTCACCGCTGGGTGTTATTACCTGCA
AATACACATCCTGCTGGACGTGCTCTGCAGCGGCAGTGGCGCCCGTTTGG
CCCTCGGAGCCTCGGTAATCTCCTATCTGATTGTCTACAACGAGGCTTCC
GCTCCCAGCCTGCTGGTTGGCGTTGTCTTGGCCACCGTTTATGGCGCAAT
GGCAGCCCGCTGTAAAACTAGCCTCCGCAGCCTGCAAATGCCGTATGTGC
GGGCCACAAATAAATTCGACTTTAGCTGTTTGTTTCTGGCCATCTGGCTA
GATGCTCTGGCCACCGTGTGTGCCTGCGCTGCCCTGGCGAGGACCCTCAG
TGCCTGCTTGGACGCCATGACCGGAGGTCTGGCCAGGATTCTCATATTGG
GCCGCAATGCACCCGCGAATGAGCCGTGGCCGGATGTTCTTGGCGTGTCG
GTTGTCTTCCTCGTCACTGGGATGTTCATGCTGGGCCTGGAGCACTCGAG
GGCCTTCAGCCTCATCCTGACTCTTGGCATGTTTGGCTTGAACGCCATTT
TAAGCGCCGTCGGCTGGTGGCGGGGCGACATGTTGGCCTGGTCTGCGGAT
AGCTACTTCCAGCCCGATGGCATTAGCAGTGTCTTCCTGGGTACTGCCCT
GCTCACCTACTCCTTCCCCGGCGATTGGCCCCAACAACTTCGAGGTGGAC
GATTCACGGCGACTCTAATTACGGGATTGGTCAGTACTTCGCTGCTGCTG
ACGGCCATTTGTCTGTCGACGGTGGTGCATTATAGATCTCAGGAGGACTA
TGTAGCCGTGCCCTTGTTCAACATTCTGGATGAAAACGGCTTCCATAAGT
TGGTTCCTGCCTCGGCTTGCATGTTGCTTTTGACGAGTTCGGCGGCATTT
CTGGAGCTCTTTCCGGAACTATATGGTATTGTTGTGCGACTGGCCACCTC
GGAGTGGAGAATACTGTCCAAGCAGATCAGTTATGAGAGCTCGGAGAGTG
GTAACCCCGTGCTGGCTGTGTTCATCGCCGGCAGCATGTGTGCCATGTTG
GCCTTCGCCTGTCCACTACAGCATCTCAGTTACACATTAGCCGCTGGCCA
CATGGGTGGGGTATTCCTGAGGGCCCTTTACCTCCTATACATCCCTTACA
GACCCAAATATATGGCGCCCAGCAGCGAGTCTTCACTGTCGTACAGTCGC
CTATCCACAGCACCGTTTGCCAAGAGCAGCAGCTACAGCAGTGCCGCAAC
TTCCAGTTCGAGTCGCTTAAAGAGAAGTCTCTGGAAGATCGGTCTGCCCA
AGCACAGTAACTTAAAAAAGCCGAAGACCAAGCCCAGGAACAAACAAGAG
CTGGAAAAGGAGTGGCTGCTCCTGGGTGAACCCACCTCGCCCTGTCCTCA
ACGAGAGGGCAGGGATGTGGAGTCCACCATTCTTTCCGATGGCGAGCCAC
CGCCATCTGACTTTGAGTACCCAGATAAATTTGACAAAAGTGACTCGGAC
ACCTCCACCGACATTGATGCCATTGTGGATGAGTATCGTGAAAAGATTAA
GGTAACCACCGCCGGACCTTTGGAGCGCAGTGTGCGAGTGCCTACGGTGA
GTTCCTGGCGCGTGACCATTTTCGCCATTGTGGTGATTGGATTGGGCATT
GCCCTATGCATTGCCGGGCTCATGATGCACTGGGCTCCGGCAGCGTTGAC
CGGAGGGATTGGGGTTCTTATCGTGACCATTATGATGGGTTTTATACCCA
AATACACGGGCAGTGTGATCAACGTGAGTCCCGTGATCTGTGGAATGTCG
CTGCTGATGGGCGTGATCCTATTCAGTGGCTGTGCTATACATTCCTGGCC
GGGATTGCTTATCTGGCTGATGGCTGGACTCATTCTGGTGATCAGATGCG
ATAAATACTGTTGCAATTGTTTTGAGCACACCACCATAATGAATGCCCAG
CTGATACCTAGTGTCTCGGGAAAGAGCAACATGGGGTCAGCGTCGGGATC
GGCATCAAATTTAGCGGGTCCCTCCACCAGCATCCGGATACCCAGACCGC
CCAAGGGAATGGGCGTAGTCGGCTTGCCACAGCGCATCAACGAGCACAGA
TGACAGTCGGAGTCCTCGGAGGAGGAAGGCGAAGACCTGTTCCACGAGGA
CTTCAATGTGCGCGACTTTGACGAGGAGGATGACGAAGATTGCTGGACTG
ATTAGCTTGCGCCTTTTAAAATCCGTTTAGAAAACTATTTAATTGCTATG
CGGATCCCCAGGACGATCCAGCTTCGAGCCACATATGCCTGAAATTTTCT
AGCTAGCTAAATTGATTGTCGAAATTTACTTATGTATTTACAAATATATA
GCTAGGCGACTCTCTGTACAACTAAGTTCAGAATAAATTAAATTTTTCAA
AACGAAAAAAAAAAAAAAAAAA

LD25644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
tadr-RB 2654 tadr-RB 1..2654 1..2654 13270 100 Plus
tadr-RA 2598 tadr-RA 317..2149 310..2142 9150 99.9 Plus
tadr-RA 2598 tadr-RA 2144..2598 2200..2654 2275 100 Plus
nc_4097.a 165 nc_4097.a 23..165 881..1023 715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21078680..21079536 1800..2654 4205 99.6 Plus
chr2L 23010047 chr2L 21077769..21078437 1034..1702 3315 99.7 Plus
chr2L 23010047 chr2L 21069490..21069798 1..309 1545 100 Plus
chr2L 23010047 chr2L 21076041..21076239 453..651 995 100 Plus
chr2L 23010047 chr2L 21077450..21077601 881..1032 760 100 Plus
chr2L 23010047 chr2L 21075840..21075985 310..455 730 100 Plus
chr2L 23010047 chr2L 21076752..21076893 741..882 710 100 Plus
chr2L 23010047 chr2L 21078517..21078620 1702..1805 520 100 Plus
chr2L 23010047 chr2L 21076576..21076668 650..742 465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21080199..21081057 1800..2658 4295 100 Plus
2L 23513712 2L 21079288..21079956 1034..1702 3345 100 Plus
2L 23513712 2L 21071008..21071316 1..309 1545 100 Plus
2L 23513712 2L 21077560..21077758 453..651 995 100 Plus
2L 23513712 2L 21078967..21079121 881..1035 775 100 Plus
2L 23513712 2L 21077359..21077504 310..455 730 100 Plus
2L 23513712 2L 21078269..21078410 741..882 710 100 Plus
2L 23513712 2L 21080036..21080139 1702..1805 520 100 Plus
2L 23513712 2L 21078093..21078185 650..742 465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21080199..21081057 1800..2658 4295 100 Plus
2L 23513712 2L 21079288..21079956 1034..1702 3345 100 Plus
2L 23513712 2L 21071008..21071316 1..309 1545 100 Plus
2L 23513712 2L 21077560..21077758 453..651 995 100 Plus
2L 23513712 2L 21078967..21079121 881..1035 775 100 Plus
2L 23513712 2L 21077359..21077504 310..455 730 100 Plus
2L 23513712 2L 21078269..21078410 741..882 710 100 Plus
2L 23513712 2L 21080036..21080139 1702..1805 520 100 Plus
2L 23513712 2L 21078093..21078185 650..742 465 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:09:21 has no hits.

LD25644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:10:15 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21069490..21069798 1..309 100 -> Plus
chr2L 21075840..21075985 310..455 100 -> Plus
chr2L 21076044..21076238 456..650 100 -> Plus
chr2L 21076577..21076668 651..742 100 -> Plus
chr2L 21076754..21076891 743..880 100 -> Plus
chr2L 21077450..21077604 881..1035 99 -> Plus
chr2L 21077771..21078437 1036..1702 99 -> Plus
chr2L 21078518..21078616 1703..1801 100 -> Plus
chr2L 21078682..21079536 1802..2654 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:41:58 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
CG9264-RB 1..1905 449..2353 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:44 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RB 1..1905 449..2353 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:06:51 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RD 12..2160 307..2455 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:54:57 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
CG9264-RB 1..1905 449..2353 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:58:16 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RD 12..2160 307..2455 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:41:57 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
CG9264-RB 1..2653 2..2654 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:44 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RB 1..2653 2..2654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:51 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RC 309..2656 307..2654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:54:57 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
CG9264-RB 1..2653 2..2654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:58:16 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
tadr-RC 309..2656 307..2654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:15 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21071008..21071316 1..309 100 -> Plus
2L 21077359..21077504 310..455 100 -> Plus
2L 21077563..21077757 456..650 100 -> Plus
2L 21078094..21078185 651..742 100 -> Plus
2L 21078271..21078408 743..880 100 -> Plus
2L 21078967..21079121 881..1035 100 -> Plus
2L 21079290..21079956 1036..1702 100 -> Plus
2L 21080037..21080135 1703..1801 100 -> Plus
2L 21080201..21081053 1802..2654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:15 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21071008..21071316 1..309 100 -> Plus
2L 21077359..21077504 310..455 100 -> Plus
2L 21077563..21077757 456..650 100 -> Plus
2L 21078094..21078185 651..742 100 -> Plus
2L 21078271..21078408 743..880 100 -> Plus
2L 21078967..21079121 881..1035 100 -> Plus
2L 21079290..21079956 1036..1702 100 -> Plus
2L 21080037..21080135 1703..1801 100 -> Plus
2L 21080201..21081053 1802..2654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:15 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21071008..21071316 1..309 100 -> Plus
2L 21077359..21077504 310..455 100 -> Plus
2L 21077563..21077757 456..650 100 -> Plus
2L 21078094..21078185 651..742 100 -> Plus
2L 21078271..21078408 743..880 100 -> Plus
2L 21078967..21079121 881..1035 100 -> Plus
2L 21079290..21079956 1036..1702 100 -> Plus
2L 21080037..21080135 1703..1801 100 -> Plus
2L 21080201..21081053 1802..2654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:51 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21078967..21079121 881..1035 100 -> Plus
arm_2L 21078094..21078185 651..742 100 -> Plus
arm_2L 21078271..21078408 743..880 100 -> Plus
arm_2L 21071008..21071316 1..309 100 -> Plus
arm_2L 21077359..21077504 310..455 100 -> Plus
arm_2L 21077563..21077757 456..650 100 -> Plus
arm_2L 21079290..21079956 1036..1702 100 -> Plus
arm_2L 21080037..21080135 1703..1801 100 -> Plus
arm_2L 21080201..21081053 1802..2654 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:16 Download gff for LD25644.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21071008..21071316 1..309 100 -> Plus
2L 21077359..21077504 310..455 100 -> Plus
2L 21077563..21077757 456..650 100 -> Plus
2L 21078094..21078185 651..742 100 -> Plus
2L 21078271..21078408 743..880 100 -> Plus
2L 21078967..21079121 881..1035 100 -> Plus
2L 21079290..21079956 1036..1702 100 -> Plus
2L 21080037..21080135 1703..1801 100 -> Plus
2L 21080201..21081053 1802..2654 100   Plus

LD25644.hyp Sequence

Translation from 448 to 2352

> LD25644.hyp
MAARCKTSLRSLQMPYVRATNKFDFSCLFLAIWLDALATVCACAALARTL
SACLDAMTGGLARILILGRNAPANEPWPDVLGVSVVFLVTGMFMLGLEHS
RAFSLILTLGMFGLNAILSAVGWWRGDMLAWSADSYFQPDGISSVFLGTA
LLTYSFPGDWPQQLRGGRFTATLITGLVSTSLLLTAICLSTVVHYRSQED
YVAVPLFNILDENGFHKLVPASACMLLLTSSAAFLELFPELYGIVVRLAT
SEWRILSKQISYESSESGNPVLAVFIAGSMCAMLAFACPLQHLSYTLAAG
HMGGVFLRALYLLYIPYRPKYMAPSSESSLSYSRLSTAPFAKSSSYSSAA
TSSSSRLKRSLWKIGLPKHSNLKKPKTKPRNKQELEKEWLLLGEPTSPCP
QREGRDVESTILSDGEPPPSDFEYPDKFDKSDSDTSTDIDAIVDEYREKI
KVTTAGPLERSVRVPTVSSWRVTIFAIVVIGLGIALCIAGLMMHWAPAAL
TGGIGVLIVTIMMGFIPKYTGSVINVSPVICGMSLLMGVILFSGCAIHSW
PGLLIWLMAGLILVIRCDKYCCNCFEHTTIMNAQLIPSVSGKSNMGSASG
SASNLAGPSTSIRIPRPPKGMGVVGLPQRINEHR*

LD25644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
tadr-PD 719 CG9264-PD 52..685 1..634 3282 100 Plus
tadr-PC 685 CG9264-PC 52..685 1..634 3282 100 Plus

LD25644.pep Sequence

Translation from 448 to 2352

> LD25644.pep
MAARCKTSLRSLQMPYVRATNKFDFSCLFLAIWLDALATVCACAALARTL
SACLDAMTGGLARILILGRNAPANEPWPDVLGVSVVFLVTGMFMLGLEHS
RAFSLILTLGMFGLNAILSAVGWWRGDMLAWSADSYFQPDGISSVFLGTA
LLTYSFPGDWPQQLRGGRFTATLITGLVSTSLLLTAICLSTVVHYRSQED
YVAVPLFNILDENGFHKLVPASACMLLLTSSAAFLELFPELYGIVVRLAT
SEWRILSKQISYESSESGNPVLAVFIAGSMCAMLAFACPLQHLSYTLAAG
HMGGVFLRALYLLYIPYRPKYMAPSSESSLSYSRLSTAPFAKSSSYSSAA
TSSSSRLKRSLWKIGLPKHSNLKKPKTKPRNKQELEKEWLLLGEPTSPCP
QREGRDVESTILSDGEPPPSDFEYPDKFDKSDSDTSTDIDAIVDEYREKI
KVTTAGPLERSVRVPTVSSWRVTIFAIVVIGLGIALCIAGLMMHWAPAAL
TGGIGVLIVTIMMGFIPKYTGSVINVSPVICGMSLLMGVILFSGCAIHSW
PGLLIWLMAGLILVIRCDKYCCNCFEHTTIMNAQLIPSVSGKSNMGSASG
SASNLAGPSTSIRIPRPPKGMGVVGLPQRINEHR*

LD25644.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21052-PA 621 GF21052-PA 1..621 1..634 2629 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21272-PA 664 GG21272-PA 52..664 1..634 3110 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10405-PA 679 GH10405-PA 52..679 1..634 2477 78.9 Plus
Dgri\GH23426-PA 679 GH23426-PA 52..679 1..634 2462 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
tadr-PD 719 CG9264-PD 52..685 1..634 3282 100 Plus
tadr-PC 685 CG9264-PC 52..685 1..634 3282 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23251-PA 727 GI23251-PA 74..694 1..629 2474 77.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25883-PA 685 GL25883-PA 57..652 6..623 2469 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21655-PA 684 GA21655-PA 57..684 6..634 2672 87.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23387-PA 261 GM23387-PA 52..255 1..204 1063 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12041-PA 377 GD12041-PA 1..377 225..634 1725 91 Plus
Dsim\GD24291-PA 245 GD24291-PA 52..119 1..68 350 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23762-PA 676 GJ23762-PA 52..676 1..634 2562 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24314-PA 679 GK24314-PA 53..674 1..628 2538 81.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12890-PA 685 GE12890-PA 52..685 1..634 3231 96.1 Plus