BDGP Sequence Production Resources |
Search the DGRC for LD25827
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 258 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | PSR-RA |
Protein status: | LD25827.pep: gold |
Preliminary Size: | 1786 |
Sequenced Size: | 1613 |
Gene | Date | Evidence |
---|---|---|
CG5383 | 2001-01-01 | Release 2 assignment |
CG5383 | 2001-07-04 | Blastp of sequenced clone |
CG5383 | 2003-01-01 | Sim4 clustering to Release 3 |
PSR | 2008-04-29 | Release 5.5 accounting |
PSR | 2008-08-15 | Release 5.9 accounting |
PSR | 2008-12-18 | 5.12 accounting |
1613 bp (1613 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051727
> LD25827.complete CCACACTGCACTCACGCTGCTTTAATTTCCAGGAGCTGTGGAAAATTGGC CAATTTCAGCAGGATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCCGCA AGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGCGAG AATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTGGGA TTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGTCGG AGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGCGGC TGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCTGGC CAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGGGCT ATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGCACG CGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACACCA TCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTCGCG ACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGCTGG TTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCCACT GGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGTGCC TGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCCATG GGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATATCC GCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAGTGC TGCAGGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCACGTG GTGCTCAACATGGACGACACCATTGCCATCACCCAGAACTTCAGTTCGCA GACGAACTTCCCCTGCGTCTGGCACAAGACTGTTCGCGGCCGGCCAAAGT TGTCACGCAAGTGGCTGCGCGTGCTGCGAGACCAGCGACCGGAGCTGGCC CAGATCGCCGATAGTATTAACCTGAACGAGAGCACCGGCTTCGCATCGGA CAGCTCCAGCAATTCAAGCTCCTCCTCGTCGAGCAGCTCCTCGTCTTCGG AGGAGGAGGAGAGCGACGATGGCGGCGATTCCAACACGGACAGCGGCCAG GAGAGTCTGACGGCCAAGAAGAAAAAGAAGCGGCGCATGGCTGGCGGCGG CTCCGGGTCCGGCTCCATGGGCGGATCATCGCGTTCCTGATCCAGGGAGC GGGCCAAGCGCAAGGGCTTGCTCATGCGCCTCTTTCAACGCCAACTGATG CTGCTGAGAGGACTGCCCCGCCGCTGCCGGCTCAGTTAGCACTGAGGTCG CGATCATACTCTGCAGAGTTTTGTGTATTTTTCTACTTGGACCAGCATGT TTGCAGCTCCTGGATCCCGTGCTCGCCCTCATCGAATGCCTGCTCCCTGA TTTCAATAGATGCTCCGGACGTGACTCATTAGCGTAAACCCTAAATGCAA ATAAATAAATGAATCCAATATGTTTGTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PSR-RA | 1758 | PSR-RA | 176..1753 | 1..1578 | 7890 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18184339..18185916 | 1577..1 | 7735 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22360781..22362358 | 1578..1 | 7890 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22101612..22103189 | 1578..1 | 7890 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18184339..18185916 | 1..1577 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 1..1227 | 64..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 1..1227 | 64..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RB | 1..1326 | 64..1389 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 1..1227 | 64..1290 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RB | 1..1326 | 64..1389 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 176..1752 | 1..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 176..1752 | 1..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 14..1590 | 1..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 176..1752 | 1..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
PSR-RA | 14..1590 | 1..1577 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22360782..22362358 | 1..1577 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22360782..22362358 | 1..1577 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22360782..22362358 | 1..1577 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18186504..18188080 | 1..1577 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22101613..22103189 | 1..1577 | 100 | Minus |
Translation from 0 to 1289
> LD25827.hyp PHCTHAALISRSCGKLANFSRMSEEFKLPKRSRKRTREVKRKARPELDGE NAWSAMRYCEKFEPFWDFTDNLERIEESQVPESEFIERFERPYKPVVIRG CTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMKYYVEYMQST RDDSPLYIFDSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRW FVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQTPKELLKVTSAM GGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVPGGWWHV VLNMDDTIAITQNFSSQTNFPCVWHKTVRGRPKLSRKWLRVLRDQRPELA QIADSINLNESTGFASDSSSNSSSSSSSSSSSSEEEESDDGGDSNTDSGQ ESLTAKKKKKRRMAGGGSGSGSMGGSSRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PSR-PB | 441 | CG5383-PB | 1..408 | 22..429 | 2196 | 100 | Plus |
PSR-PA | 408 | CG5383-PA | 1..408 | 22..429 | 2196 | 100 | Plus |
CG7200-PB | 425 | CG7200-PB | 174..309 | 176..324 | 204 | 34.4 | Plus |
CG7200-PA | 425 | CG7200-PA | 174..309 | 176..324 | 204 | 34.4 | Plus |
Translation from 63 to 1289
> LD25827.pep MSEEFKLPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDN LERIEESQVPESEFIERFERPYKPVVIRGCTDGWLALEKWTLARLAKKYR NQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDSSFGEHHRRRK LLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSA WNTLIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQL PSWPEQYRPIEVLQGAGETVFVPGGWWHVVLNMDDTIAITQNFSSQTNFP CVWHKTVRGRPKLSRKWLRVLRDQRPELAQIADSINLNESTGFASDSSSN SSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTAKKKKKRRMAGGGSGSG SMGGSSRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16939-PA | 407 | GF16939-PA | 1..394 | 1..393 | 1833 | 91.4 | Plus |
Dana\GF14855-PA | 425 | GF14855-PA | 171..320 | 153..316 | 216 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12525-PA | 405 | GG12525-PA | 1..405 | 1..408 | 2118 | 97.5 | Plus |
Dere\GG21717-PA | 424 | GG21717-PA | 173..310 | 155..305 | 202 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19722-PA | 410 | GH19722-PA | 1..390 | 1..392 | 1762 | 89 | Plus |
Dgri\GH10542-PA | 434 | GH10542-PA | 30..317 | 51..316 | 214 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PSR-PB | 441 | CG5383-PB | 1..408 | 1..408 | 2196 | 100 | Plus |
PSR-PA | 408 | CG5383-PA | 1..408 | 1..408 | 2196 | 100 | Plus |
JMJD4-PB | 425 | CG7200-PB | 174..309 | 155..303 | 204 | 34.4 | Plus |
JMJD4-PA | 425 | CG7200-PA | 174..309 | 155..303 | 204 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22281-PA | 402 | GI22281-PA | 1..389 | 1..394 | 1750 | 88.3 | Plus |
Dmoj\GI20889-PA | 417 | GI20889-PA | 169..317 | 155..316 | 236 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24169-PA | 402 | GL24169-PA | 1..382 | 1..384 | 1776 | 90.4 | Plus |
Dper\GL19437-PA | 429 | GL19437-PA | 174..323 | 153..316 | 219 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18839-PA | 402 | GA18839-PA | 1..382 | 1..384 | 1776 | 90.4 | Plus |
Dpse\GA20176-PA | 429 | GA20176-PA | 174..323 | 153..316 | 220 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23660-PA | 408 | GM23660-PA | 1..408 | 1..408 | 2183 | 99.8 | Plus |
Dsec\GM17099-PA | 425 | GM17099-PA | 174..311 | 155..305 | 200 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18469-PA | 408 | GD18469-PA | 1..408 | 1..408 | 2183 | 99.8 | Plus |
Dsim\GD21842-PA | 425 | GD21842-PA | 174..311 | 155..305 | 200 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24074-PA | 405 | GJ24074-PA | 1..390 | 1..392 | 1767 | 89 | Plus |
Dvir\GJ19851-PA | 442 | GJ19851-PA | 173..321 | 155..316 | 239 | 35.9 | Plus |