Clone LD25827 Report

Search the DGRC for LD25827

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:258
Well:27
Vector:pOT2
Associated Gene/TranscriptPSR-RA
Protein status:LD25827.pep: gold
Preliminary Size:1786
Sequenced Size:1613

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5383 2001-01-01 Release 2 assignment
CG5383 2001-07-04 Blastp of sequenced clone
CG5383 2003-01-01 Sim4 clustering to Release 3
PSR 2008-04-29 Release 5.5 accounting
PSR 2008-08-15 Release 5.9 accounting
PSR 2008-12-18 5.12 accounting

Clone Sequence Records

LD25827.complete Sequence

1613 bp (1613 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051727

> LD25827.complete
CCACACTGCACTCACGCTGCTTTAATTTCCAGGAGCTGTGGAAAATTGGC
CAATTTCAGCAGGATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCCGCA
AGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGCGAG
AATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTGGGA
TTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGTCGG
AGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGCGGC
TGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCTGGC
CAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGGGCT
ATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGCACG
CGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACACCA
TCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTCGCG
ACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGCTGG
TTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCCACT
GGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGTGCC
TGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCCATG
GGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATATCC
GCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAGTGC
TGCAGGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCACGTG
GTGCTCAACATGGACGACACCATTGCCATCACCCAGAACTTCAGTTCGCA
GACGAACTTCCCCTGCGTCTGGCACAAGACTGTTCGCGGCCGGCCAAAGT
TGTCACGCAAGTGGCTGCGCGTGCTGCGAGACCAGCGACCGGAGCTGGCC
CAGATCGCCGATAGTATTAACCTGAACGAGAGCACCGGCTTCGCATCGGA
CAGCTCCAGCAATTCAAGCTCCTCCTCGTCGAGCAGCTCCTCGTCTTCGG
AGGAGGAGGAGAGCGACGATGGCGGCGATTCCAACACGGACAGCGGCCAG
GAGAGTCTGACGGCCAAGAAGAAAAAGAAGCGGCGCATGGCTGGCGGCGG
CTCCGGGTCCGGCTCCATGGGCGGATCATCGCGTTCCTGATCCAGGGAGC
GGGCCAAGCGCAAGGGCTTGCTCATGCGCCTCTTTCAACGCCAACTGATG
CTGCTGAGAGGACTGCCCCGCCGCTGCCGGCTCAGTTAGCACTGAGGTCG
CGATCATACTCTGCAGAGTTTTGTGTATTTTTCTACTTGGACCAGCATGT
TTGCAGCTCCTGGATCCCGTGCTCGCCCTCATCGAATGCCTGCTCCCTGA
TTTCAATAGATGCTCCGGACGTGACTCATTAGCGTAAACCCTAAATGCAA
ATAAATAAATGAATCCAATATGTTTGTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD25827.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
PSR-RA 1758 PSR-RA 176..1753 1..1578 7890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18184339..18185916 1577..1 7735 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22360781..22362358 1578..1 7890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22101612..22103189 1578..1 7890 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:26:02 has no hits.

LD25827.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:27:18 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18184339..18185916 1..1577 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:55 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 1..1227 64..1290 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:20 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 1..1227 64..1290 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:23 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RB 1..1326 64..1389 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:38 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 1..1227 64..1290 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:19 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RB 1..1326 64..1389 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:06 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 176..1752 1..1577 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:20 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 176..1752 1..1577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:23 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 14..1590 1..1577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:38 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 176..1752 1..1577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:19 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
PSR-RA 14..1590 1..1577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:18 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22360782..22362358 1..1577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:18 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22360782..22362358 1..1577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:27:18 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22360782..22362358 1..1577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:23 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18186504..18188080 1..1577 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:35 Download gff for LD25827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22101613..22103189 1..1577 100   Minus

LD25827.hyp Sequence

Translation from 0 to 1289

> LD25827.hyp
PHCTHAALISRSCGKLANFSRMSEEFKLPKRSRKRTREVKRKARPELDGE
NAWSAMRYCEKFEPFWDFTDNLERIEESQVPESEFIERFERPYKPVVIRG
CTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMKYYVEYMQST
RDDSPLYIFDSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRW
FVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQTPKELLKVTSAM
GGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVPGGWWHV
VLNMDDTIAITQNFSSQTNFPCVWHKTVRGRPKLSRKWLRVLRDQRPELA
QIADSINLNESTGFASDSSSNSSSSSSSSSSSSEEEESDDGGDSNTDSGQ
ESLTAKKKKKRRMAGGGSGSGSMGGSSRS*

LD25827.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
PSR-PB 441 CG5383-PB 1..408 22..429 2196 100 Plus
PSR-PA 408 CG5383-PA 1..408 22..429 2196 100 Plus
CG7200-PB 425 CG7200-PB 174..309 176..324 204 34.4 Plus
CG7200-PA 425 CG7200-PA 174..309 176..324 204 34.4 Plus

LD25827.pep Sequence

Translation from 63 to 1289

> LD25827.pep
MSEEFKLPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDN
LERIEESQVPESEFIERFERPYKPVVIRGCTDGWLALEKWTLARLAKKYR
NQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDSSFGEHHRRRK
LLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSA
WNTLIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQL
PSWPEQYRPIEVLQGAGETVFVPGGWWHVVLNMDDTIAITQNFSSQTNFP
CVWHKTVRGRPKLSRKWLRVLRDQRPELAQIADSINLNESTGFASDSSSN
SSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTAKKKKKRRMAGGGSGSG
SMGGSSRS*

LD25827.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16939-PA 407 GF16939-PA 1..394 1..393 1833 91.4 Plus
Dana\GF14855-PA 425 GF14855-PA 171..320 153..316 216 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12525-PA 405 GG12525-PA 1..405 1..408 2118 97.5 Plus
Dere\GG21717-PA 424 GG21717-PA 173..310 155..305 202 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19722-PA 410 GH19722-PA 1..390 1..392 1762 89 Plus
Dgri\GH10542-PA 434 GH10542-PA 30..317 51..316 214 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
PSR-PB 441 CG5383-PB 1..408 1..408 2196 100 Plus
PSR-PA 408 CG5383-PA 1..408 1..408 2196 100 Plus
JMJD4-PB 425 CG7200-PB 174..309 155..303 204 34.4 Plus
JMJD4-PA 425 CG7200-PA 174..309 155..303 204 34.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22281-PA 402 GI22281-PA 1..389 1..394 1750 88.3 Plus
Dmoj\GI20889-PA 417 GI20889-PA 169..317 155..316 236 34.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24169-PA 402 GL24169-PA 1..382 1..384 1776 90.4 Plus
Dper\GL19437-PA 429 GL19437-PA 174..323 153..316 219 35.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18839-PA 402 GA18839-PA 1..382 1..384 1776 90.4 Plus
Dpse\GA20176-PA 429 GA20176-PA 174..323 153..316 220 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23660-PA 408 GM23660-PA 1..408 1..408 2183 99.8 Plus
Dsec\GM17099-PA 425 GM17099-PA 174..311 155..305 200 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18469-PA 408 GD18469-PA 1..408 1..408 2183 99.8 Plus
Dsim\GD21842-PA 425 GD21842-PA 174..311 155..305 200 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24074-PA 405 GJ24074-PA 1..390 1..392 1767 89 Plus
Dvir\GJ19851-PA 442 GJ19851-PA 173..321 155..316 239 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14253-PA 400 GK14253-PA 1..379 1..384 1722 88.5 Plus
Dwil\GK14582-PA 423 GK14582-PA 173..308 155..303 222 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24049-PA 410 GE24049-PA 1..410 1..408 2127 97.1 Plus
Dyak\GE12742-PA 428 GE12742-PA 177..314 155..305 204 34 Plus