Clone LD25907 Report

Search the DGRC for LD25907

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:259
Well:7
Vector:pOT2
Associated Gene/Transcriptnumb-RB
Protein status:LD25907.pep: validated not full length
Preliminary Size:2339
Sequenced Size:2354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3779 2001-01-01 Release 2 assignment
CG3779 2001-07-04 Blastp of sequenced clone
CG3779 2003-01-01 Sim4 clustering to Release 3
numb 2008-04-29 Release 5.5 accounting
numb 2008-08-15 Release 5.9 accounting
numb 2008-12-18 5.12 accounting

Clone Sequence Records

LD25907.complete Sequence

2354 bp (2354 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051728

> LD25907.complete
AATCCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCGATCG
GCCACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCTTTGA
ATCGCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAAT
CCCGTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTG
CGAGTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGA
GAAGGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCT
ACATATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTG
GCGTGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTT
TGCCGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGA
CAATGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTC
CGTCAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAA
TGAGCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGG
CCACCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACG
CCCAACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAG
TCAGTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGT
CCAATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCA
ATGCAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGC
CAAGTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATT
CTGTGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTTGACC
CAGACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACAACAA
TCGCAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAACATG
TACACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGCCAGC
ACCACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGATCGGA
GCAGAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGGCTGG
GTCATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCACTTAT
TTGGCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCGCTGC
AGTTGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTGGCCA
ATGTGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAGCACT
GCGCGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCACCGCC
CAAGGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATTGCGG
GGTCACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACTTAGT
TTAAAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAGATGG
TTAGATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAACGCAA
ACATAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAGTTAC
TCACACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGCGCTT
AGCACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCAGTTC
GTAAGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGTATGC
AACTAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGAGTCA
TACTTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTAGACT
GATACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTACCAAG
TTACCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAAATGG
CACCCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATGCCCT
TCCACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACATAAA
TATGTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTATTATT
TTATCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTTTATT
ATTTAACTTAATTTTTAAATCTGTACAAAATGTATTATACTTAAATTATA
AATATAATTTAAAAATAAACAAAACGGAAACGTAAAAAAAAAAAAAAAAA
AAAA

LD25907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
numb.d 3054 numb.d 495..2832 1..2338 11690 100 Plus
numb-RA 3622 numb-RA 1063..3400 1..2338 11690 100 Plus
numb.l 3502 numb.l 507..2844 1..2338 11690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9459816..9462002 146..2333 10620 99.1 Plus
chr2L 23010047 chr2L 9459499..9459644 1..146 715 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:17:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 146..2338 10965 100 Plus
2L 23513712 2L 9460608..9460753 1..146 730 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9460937..9463129 146..2338 10965 100 Plus
2L 23513712 2L 9460608..9460753 1..146 730 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:36:09 has no hits.

LD25907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:57 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9459499..9459644 1..146 99 -> Plus
chr2L 9459817..9461886 147..2216 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:58 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 62..1548 1..1487 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:21 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 62..1548 1..1487 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:31 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 185..1671 1..1487 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:41 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 62..1548 1..1487 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:07 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RA 185..1671 1..1487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:18:08 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 581..2913 1..2333 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:21 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 581..2913 1..2333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:31 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RD 1003..3335 1..2333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:41 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RB 581..2913 1..2333 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:07 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
numb-RD 1003..3335 1..2333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:57 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460608..9460753 1..146 100 -> Plus
2L 9460938..9463124 147..2333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:57 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460608..9460753 1..146 100 -> Plus
2L 9460938..9463124 147..2333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:57 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460608..9460753 1..146 100 -> Plus
2L 9460938..9463124 147..2333 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:31 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9460608..9460753 1..146 100 -> Plus
arm_2L 9460938..9463124 147..2333 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:36 Download gff for LD25907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9460608..9460753 1..146 100 -> Plus
2L 9460938..9463124 147..2333 100   Plus

LD25907.hyp Sequence

Translation from 2 to 1486

> LD25907.hyp
SSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQVCEEALKVLRQS
RRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSY
ICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKECGVT
MTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVDGPGSAMPGPPAA
TVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFKRQMSLRINDLPS
NADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGADPLSAAAVAADS
VSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQNIIAAEKQVQHV
HSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIETSTELPNAEQWLG
HVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGGPDDPFDAEWVAN
VAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQSFQVQL*

LD25907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 63..556 1..494 2555 100 Plus
numb-PB 515 CG3779-PB 22..515 1..494 2555 100 Plus
numb-PA 556 CG3779-PA 63..556 1..494 2555 100 Plus

LD25907.pep Sequence

Translation from 110 to 1486

> LD25907.pep
MQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVS
FCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVC
LERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERS
VDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSP
FKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSA
GADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSI
NQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSI
ETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGG
GGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAP
AQSFQVQL*

LD25907.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22745-PA 556 GF22745-PA 99..556 1..458 2114 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25352-PA 560 GG25352-PA 99..560 1..458 2370 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13024-PA 555 GH13024-PA 99..555 1..458 1731 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
numb-PD 556 CG3779-PD 99..556 1..458 2363 100 Plus
numb-PB 515 CG3779-PB 58..515 1..458 2363 100 Plus
numb-PA 556 CG3779-PA 99..556 1..458 2363 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17641-PA 575 GI17641-PA 99..575 1..458 1839 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26154-PA 560 GL26154-PA 99..560 1..458 1918 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17683-PA 559 GA17683-PA 99..559 1..458 1908 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17464-PA 556 GM17464-PA 99..556 1..458 2417 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23607-PA 556 GD23607-PA 99..556 1..458 2420 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18207-PA 552 GJ18207-PA 99..552 1..458 1823 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24208-PA 561 GK24208-PA 99..561 1..458 1913 86.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18844-PA 556 GE18844-PA 99..556 1..458 2394 98.3 Plus
Dyak\GE14752-PA 132 GE14752-PA 12..132 338..458 537 96.7 Plus
Dyak\GE25448-PA 132 GE25448-PA 12..132 338..458 537 96.7 Plus