BDGP Sequence Production Resources |
Search the DGRC for LD25907
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 259 |
Well: | 7 |
Vector: | pOT2 |
Associated Gene/Transcript | numb-RB |
Protein status: | LD25907.pep: validated not full length |
Preliminary Size: | 2339 |
Sequenced Size: | 2354 |
Gene | Date | Evidence |
---|---|---|
CG3779 | 2001-01-01 | Release 2 assignment |
CG3779 | 2001-07-04 | Blastp of sequenced clone |
CG3779 | 2003-01-01 | Sim4 clustering to Release 3 |
numb | 2008-04-29 | Release 5.5 accounting |
numb | 2008-08-15 | Release 5.9 accounting |
numb | 2008-12-18 | 5.12 accounting |
2354 bp (2354 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051728
> LD25907.complete AATCCTCGAAGCCGCATCAATGGCAGGCGGACGAGGAGGCCGTGCGATCG GCCACCTGCTCCTTTTCCGTCAAGTATCTGGGATGTGTCGAGGTCTTTGA ATCGCGCGGCATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAAT CCCGTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTG CGAGTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGA GAAGGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCT ACATATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTG GCGTGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTT TGCCGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGA CAATGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTC CGTCAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAA TGAGCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGG CCACCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACG CCCAACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAG TCAGTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGT CCAATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCA ATGCAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGC CAAGTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATT CTGTGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTTGACC CAGACAGACGCCCTATTAGCCGCCGGCGAGGATCTAAACTTCAACAACAA TCGCAGCATTAATCAGAACATCATTGCCGCCGAGAAGCAGGTGCAACATG TACACTCATATGCCCCGCCGACGGCACAAGTGACGCCTCGAGTGGCCAGC ACCACGCCCACATATCAGACGCTCCATTCGCAGTCGCCCTCGCGATCGGA GCAGAGCATCGAAACCTCGACGGAACTGCCCAATGCCGAGCAATGGCTGG GTCATGTGGTGCGCAGTACGTCTCCGGCAGCACCGAAGCGGCCCACTTAT TTGGCCAACGTTGGCCGAGCTCAGACACTGGCCAGTGGCACTGGCGCTGC AGTTGGAGGCGGTGGCCCAGACGATCCATTTGACGCCGAGTGGGTGGCCA ATGTGGCAGCGGCCAAGCAATTGTCGCCAGACTTGCCAATCCCGAGCACT GCGCGCTCGCCTCTGGCCAGGCACAGCACCAATCCGTTCATCTCACCGCC CAAGGCGCCGGCGCAGTCATTCCAGGTGCAGCTCTAGGCAGCGATTGCGG GGTCACCAGGGGGACAAAGTGTGGTTCGCTTGAAAAAAACGTAACTTAGT TTAAAGTTCAGGGGCAGGATCGGGCCAAACAGAGAATCGAACAAAGATGG TTAGATGGATGGCTGGATCGGATGGAGGTTATCAGAGATACTTAACGCAA ACATAACTAATGTTGAATATGCATATATAGAAAACATAAACTACAGTTAC TCACACGCAAAACGCATCAAGTACAGTAAATAAATCCATCAATGGCGCTT AGCACTAGGCCAAAACTTAAATTGCTTCGAGTAAAATAAATCATCAGTTC GTAAGAGATCTTATACCGAATTTCAGTCTTATAAGCGGTTTTGAGTATGC AACTAGGAATTAAAGTTCTACGACATGTAATTTTTAAAAGACTTGAGTCA TACTTCGATCATTCTTCCCATACTAAAAGACCGTTTCCATTGACTAGACT GATACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTACCAAG TTACCCACGAAAGTCCACCATAAAGTAAACAACAAAACAAAAACAAATGG CACCCTCTAAGCTTAAATGCAAACTCTGTATTATACTTTGGTAATGCCCT TCCACTACTTGTTGATTGATCCCACTAAGAATAATGATTAGATACATAAA TATGTATGTTGATATATAGGAAGCTCTATGTCATAGAGCCGATTATTATT TTATCAGTGTCAGTTTTGCGGTACACCGTTTTTATATCAAATCTTTTATT ATTTAACTTAATTTTTAAATCTGTACAAAATGTATTATACTTAAATTATA AATATAATTTAAAAATAAACAAAACGGAAACGTAAAAAAAAAAAAAAAAA AAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9459499..9459644 | 1..146 | 99 | -> | Plus |
chr2L | 9459817..9461886 | 147..2216 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 62..1548 | 1..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 62..1548 | 1..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 185..1671 | 1..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 62..1548 | 1..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RA | 185..1671 | 1..1487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 581..2913 | 1..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 581..2913 | 1..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RD | 1003..3335 | 1..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RB | 581..2913 | 1..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
numb-RD | 1003..3335 | 1..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460608..9460753 | 1..146 | 100 | -> | Plus |
2L | 9460938..9463124 | 147..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460608..9460753 | 1..146 | 100 | -> | Plus |
2L | 9460938..9463124 | 147..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460608..9460753 | 1..146 | 100 | -> | Plus |
2L | 9460938..9463124 | 147..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9460608..9460753 | 1..146 | 100 | -> | Plus |
arm_2L | 9460938..9463124 | 147..2333 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9460608..9460753 | 1..146 | 100 | -> | Plus |
2L | 9460938..9463124 | 147..2333 | 100 | Plus |
Translation from 2 to 1486
> LD25907.hyp SSKPHQWQADEEAVRSATCSFSVKYLGCVEVFESRGMQVCEEALKVLRQS RRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSY ICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQRRDKECGVT MTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVDGPGSAMPGPPAA TVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSPFKRQMSLRINDLPS NADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSAGADPLSAAAVAADS VSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSINQNIIAAEKQVQHV HSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSIETSTELPNAEQWLG HVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGGGGPDDPFDAEWVAN VAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAPAQSFQVQL*
Translation from 110 to 1486
> LD25907.pep MQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVS FCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVC LERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERS VDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLSTIGSQSP FKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAEVSPAKSA GADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLNFNNNRSI NQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSPSRSEQSI ETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASGTGAAVGG GGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPFISPPKAP AQSFQVQL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22745-PA | 556 | GF22745-PA | 99..556 | 1..458 | 2114 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25352-PA | 560 | GG25352-PA | 99..560 | 1..458 | 2370 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13024-PA | 555 | GH13024-PA | 99..555 | 1..458 | 1731 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
numb-PD | 556 | CG3779-PD | 99..556 | 1..458 | 2363 | 100 | Plus |
numb-PB | 515 | CG3779-PB | 58..515 | 1..458 | 2363 | 100 | Plus |
numb-PA | 556 | CG3779-PA | 99..556 | 1..458 | 2363 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17641-PA | 575 | GI17641-PA | 99..575 | 1..458 | 1839 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26154-PA | 560 | GL26154-PA | 99..560 | 1..458 | 1918 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17683-PA | 559 | GA17683-PA | 99..559 | 1..458 | 1908 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17464-PA | 556 | GM17464-PA | 99..556 | 1..458 | 2417 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23607-PA | 556 | GD23607-PA | 99..556 | 1..458 | 2420 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18207-PA | 552 | GJ18207-PA | 99..552 | 1..458 | 1823 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24208-PA | 561 | GK24208-PA | 99..561 | 1..458 | 1913 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18844-PA | 556 | GE18844-PA | 99..556 | 1..458 | 2394 | 98.3 | Plus |
Dyak\GE14752-PA | 132 | GE14752-PA | 12..132 | 338..458 | 537 | 96.7 | Plus |
Dyak\GE25448-PA | 132 | GE25448-PA | 12..132 | 338..458 | 537 | 96.7 | Plus |