Clone LD25913 Report

Search the DGRC for LD25913

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:259
Well:13
Vector:pOT2
Associated Gene/Transcriptfal-RB
Protein status:LD25913.pep: gold
Preliminary Size:1973
Sequenced Size:1922

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9670 2001-01-01 Release 2 assignment
CG9670 2001-07-04 Blastp of sequenced clone
CG9670 2003-01-01 Sim4 clustering to Release 3
fal 2008-04-29 Release 5.5 accounting
fal 2008-08-15 Release 5.9 accounting
fal 2008-12-18 5.12 accounting

Clone Sequence Records

LD25913.complete Sequence

1922 bp (1922 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051729

> LD25913.complete
CTTGACGAATCGGAGTCGCTATAAAATGTAAAAAAATACCCGGATGTTAT
ATATTCGCACAAATCGGCGGGAAGACAGCCTTCAAGACGTCGTGCTGTGC
GCATTTTCGGGTTTGCTTCGGACGCGGATTGTCGATAAGCAGGAATCCAA
TTAGAATGTCAGCCAGCGCAGTGATTCACTCCCTCGCTCAGCGACGGCGC
TCTCTTTCTCTTCCCCTCTCCAACGAACCAAAGAACTCGAAACTCCCGCT
TTCCCAACAACAACTACAACAGCAGCAGCATGGACACCACGAACAACAAC
AACGCCCATCTATGCTTATTGAGGATGAGGTTCACGGTGTAATCGAACTG
TCGAGCCATATCCAAGAGATCGTCGAGCATCCACTCTTCCAGCGCCTCAA
ACATGTCCACCAGTTGGGTCTCCTTCCGTGGGCCATCGATAAGAAGGCCG
ATCACAAGCGATACGATCATTGCCTTGGAGCCTACAAAAGCGCGCAGGAT
CACCTTAGGGCCATCGAACGTAATTCGCATTACGAGCCAAAGCTTCCGGA
TTGGTGTCGTCAGGCGGTGGAGATAGCCGCTCTCCTTCACGACATTGGTC
ACGGACCAATGTCACATGCCTGGGAGTTGGTGACCCACCATGAATTTGAT
CACGAGGAAAACGCAATGGCCTGTGTGGATAAAATTTTTAAGGATGCCCT
CAATCAGGAGCTAGTCTCCTTGAGAGATGATGGTGGCGGGCGAGGTGTTC
AATTGATAAAGGCTTTGATATTGGGATCCAGTGAGAATCTGCCGTTCCCC
ATGCTGGGACATACCTACATCTTTGATATTGTGCATAATCGTCGCTGCGG
ATTGGATGTGGATAAATGGGATTATCTGCGGCGTGATAACAAGCGCCTGA
AAATACTCAGCTCTGCGGAAATGGACTTTGATGATGTATTTCTTCAGGCT
CGCATATCACCTGATGGTCAACGCATAGAGTATCGTTATGCTGACTATCA
TCGGGTATATCGCTTGTTCGAGGCGCGATCGCTGCTCCACGTAAAGGCCT
ATCAATATCCGCTAACTTGTGCCATGGATGTTATTTTTGTCAGTGTAGTA
CAACGTATTGCTCCAGAACTACTAAGTATTCGCTCAAAGGATCCAAAGTG
GCTGGAATTGACCGACGAGTATGTTTTAAATGTCATTGAAAAGGATCCTA
TATCGAGATATGTAAAAGAACCTCATCGACTCGTAGAAGTCCCCAGCAAC
GACTGTTCCGGATCGGACATCATACGGGTGAACAGGGTCATACCTGGACC
TTGGGAGCTTATAAAATCCGCAAGGGAGTTAGCTTTCTTTGGCAATAAGC
GCAAGAAGCGTCCAATTACCCGATGTGTAAGCCCGACGATAGTCAACAAG
TGCTTTAAGTTAGAGTAGAAACATCCACCAGAGAATAGTTCATGTTAAGT
CAACAAACAAACGTATGTTATTGTTTCCATTCGCTTCGTTTTCTTATATT
TAATAAACTATATTTCATAAAAAGATGTACAAATACTCCAACGGTTGCGT
TCGTAGTGCGGCCATTCTTATTGCCATTTACATTTTGTTATCCAGCATAG
TCGTTGAGTTTTTTTTAGTTATTTAATGTTCTTTATTTTTATTTTTCGTT
TCCATTTATAGTTAAAACTGTGAAATCAGTGGAAAGACAATATGTTCTTA
AAATATTCATTTATTAGTTTATACAGTGTTTATCATAATCGACTTAAAAC
TAAAATACTAAACCAAAAATTTCAACAGTTCACTTGAAGACATCACAATT
CAAACTCAGGTCTTTATAACATAAGGTACTTACTAATCTATATAAATATA
AGATGCATTTGTCATATTTTTGATAACCGCTTTGAAATATACACAAGAGA
AAACAAAAAAAAAAAAAAAAAA

LD25913.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
fal-RA 2187 fal-RA 252..2157 1..1906 9530 100 Plus
fal.b 2215 fal.b 280..2185 1..1906 9530 100 Plus
fal-RB 2187 fal-RB 252..2157 1..1906 9530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19287008..19287708 651..1351 3490 99.9 Plus
chr3L 24539361 chr3L 19287766..19288319 1351..1904 2755 99.8 Plus
chr3L 24539361 chr3L 19284268..19284578 1..311 1510 99 Plus
chr3L 24539361 chr3L 19286761..19286937 474..650 870 99.4 Plus
chr3L 24539361 chr3L 19286536..19286702 312..478 820 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19297519..19298219 651..1351 3505 100 Plus
3L 28110227 3L 19298277..19298832 1351..1906 2780 100 Plus
3L 28110227 3L 19294788..19295098 1..311 1555 100 Plus
3L 28110227 3L 19297272..19297448 474..650 870 99.4 Plus
3L 28110227 3L 19297046..19297212 312..478 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19290619..19291319 651..1351 3505 100 Plus
3L 28103327 3L 19291377..19291932 1351..1906 2780 100 Plus
3L 28103327 3L 19287888..19288198 1..311 1555 100 Plus
3L 28103327 3L 19290372..19290548 474..650 870 99.4 Plus
3L 28103327 3L 19290146..19290312 312..478 835 100 Plus
Blast to na_te.dros performed 2019-03-16 00:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2584..2666 220..302 172 67.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3275..3323 251..302 145 78.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6829 255..302 141 77.1 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 515..573 239..300 141 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2487..2541 255..309 140 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2385 226..303 138 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2430 255..303 137 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6878 256..303 132 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2400 218..303 130 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2442 255..303 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2484..2546 255..318 128 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6788 255..303 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6809 255..303 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6842 255..303 128 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2379 255..303 128 73.5 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 543..591 255..303 128 73.5 Plus
roo 9092 roo DM_ROO 9092bp 1112..1160 255..303 128 73.5 Plus
roo 9092 roo DM_ROO 9092bp 1110..1157 256..306 122 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2490 255..303 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2880..2928 255..303 119 71.4 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2057..2196 1851..1711 116 56.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1542..1589 255..302 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6767 256..303 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2343 267..303 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2838 255..300 113 71.7 Plus

LD25913.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:53:28 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19284268..19284521 1..254 98 == Plus
chr3L 19286536..19286702 312..478 99 -> Plus
chr3L 19286766..19286937 479..650 100 -> Plus
chr3L 19287008..19287708 651..1351 99 -> Plus
chr3L 19287767..19288319 1352..1904 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:04:59 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RA 1..1263 156..1418 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:13 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RA 1..1263 156..1418 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:59:35 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RC 1..1107 312..1418 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:20 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RA 1..1263 156..1418 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:16:53 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RC 1..1107 312..1418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:56 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RB 20..1923 1..1904 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:13 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RB 20..1923 1..1904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:35 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RB 22..1925 1..1904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:20 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RB 20..1923 1..1904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:16:53 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
fal-RB 22..1925 1..1904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:28 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19294788..19295098 1..311 100 -> Plus
3L 19297046..19297212 312..478 100 -> Plus
3L 19297277..19297448 479..650 100 -> Plus
3L 19297519..19298219 651..1351 100 -> Plus
3L 19298278..19298830 1352..1904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:28 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19294788..19295098 1..311 100 -> Plus
3L 19297046..19297212 312..478 100 -> Plus
3L 19297277..19297448 479..650 100 -> Plus
3L 19297519..19298219 651..1351 100 -> Plus
3L 19298278..19298830 1352..1904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:28 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19294788..19295098 1..311 100 -> Plus
3L 19297046..19297212 312..478 100 -> Plus
3L 19297277..19297448 479..650 100 -> Plus
3L 19297519..19298219 651..1351 100 -> Plus
3L 19298278..19298830 1352..1904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:35 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19287888..19288198 1..311 100 -> Plus
arm_3L 19290146..19290312 312..478 100 -> Plus
arm_3L 19290377..19290548 479..650 100 -> Plus
arm_3L 19290619..19291319 651..1351 100 -> Plus
arm_3L 19291378..19291930 1352..1904 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:26 Download gff for LD25913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19287888..19288198 1..311 100 -> Plus
3L 19290146..19290312 312..478 100 -> Plus
3L 19290377..19290548 479..650 100 -> Plus
3L 19290619..19291319 651..1351 100 -> Plus
3L 19291378..19291930 1352..1904 100   Plus

LD25913.pep Sequence

Translation from 155 to 1417

> LD25913.pep
MSASAVIHSLAQRRRSLSLPLSNEPKNSKLPLSQQQLQQQQHGHHEQQQR
PSMLIEDEVHGVIELSSHIQEIVEHPLFQRLKHVHQLGLLPWAIDKKADH
KRYDHCLGAYKSAQDHLRAIERNSHYEPKLPDWCRQAVEIAALLHDIGHG
PMSHAWELVTHHEFDHEENAMACVDKIFKDALNQELVSLRDDGGGRGVQL
IKALILGSSENLPFPMLGHTYIFDIVHNRRCGLDVDKWDYLRRDNKRLKI
LSSAEMDFDDVFLQARISPDGQRIEYRYADYHRVYRLFEARSLLHVKAYQ
YPLTCAMDVIFVSVVQRIAPELLSIRSKDPKWLELTDEYVLNVIEKDPIS
RYVKEPHRLVEVPSNDCSGSDIIRVNRVIPGPWELIKSARELAFFGNKRK
KRPITRCVSPTIVNKCFKLE*

LD25913.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23671-PA 368 GF23671-PA 1..367 53..419 1455 72.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16031-PA 419 GG16031-PA 1..419 1..420 1834 82.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17173-PA 409 GH17173-PA 35..408 46..419 1074 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
fal-PD 368 CG9670-PD 1..368 53..420 1961 100 Plus
fal-PB 368 CG9670-PB 1..368 53..420 1961 100 Plus
fal-PC 368 CG9670-PC 1..368 53..420 1961 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11786-PA 415 GI11786-PA 45..415 51..420 1070 54.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20931-PA 368 GL20931-PA 1..368 53..420 1407 68.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21953-PA 407 GA21953-PA 38..407 51..420 1399 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15021-PA 444 GM15021-PA 77..444 53..420 1896 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14799-PA 419 GD14799-PA 1..419 1..420 2022 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13487-PA 414 GJ13487-PA 45..413 51..419 1134 56.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20191-PA 409 GK20191-PA 13..409 29..420 1157 57.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23074-PA 368 GE23074-PA 1..368 53..420 1780 88.9 Plus

LD25913.hyp Sequence

Translation from 155 to 1417

> LD25913.hyp
MSASAVIHSLAQRRRSLSLPLSNEPKNSKLPLSQQQLQQQQHGHHEQQQR
PSMLIEDEVHGVIELSSHIQEIVEHPLFQRLKHVHQLGLLPWAIDKKADH
KRYDHCLGAYKSAQDHLRAIERNSHYEPKLPDWCRQAVEIAALLHDIGHG
PMSHAWELVTHHEFDHEENAMACVDKIFKDALNQELVSLRDDGGGRGVQL
IKALILGSSENLPFPMLGHTYIFDIVHNRRCGLDVDKWDYLRRDNKRLKI
LSSAEMDFDDVFLQARISPDGQRIEYRYADYHRVYRLFEARSLLHVKAYQ
YPLTCAMDVIFVSVVQRIAPELLSIRSKDPKWLELTDEYVLNVIEKDPIS
RYVKEPHRLVEVPSNDCSGSDIIRVNRVIPGPWELIKSARELAFFGNKRK
KRPITRCVSPTIVNKCFKLE*

LD25913.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
fal-PD 368 CG9670-PD 1..368 53..420 1961 100 Plus
fal-PB 368 CG9670-PB 1..368 53..420 1961 100 Plus
fal-PC 368 CG9670-PC 1..368 53..420 1961 100 Plus