BDGP Sequence Production Resources |
Search the DGRC for LD25916
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 259 |
Well: | 16 |
Vector: | pOT2 |
Associated Gene/Transcript | CG12728-RA |
Protein status: | LD25916.pep: gold |
Preliminary Size: | 1948 |
Sequenced Size: | 1807 |
Gene | Date | Evidence |
---|---|---|
CG12728 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12728 | 2008-04-29 | Release 5.5 accounting |
1807 bp (1807 high quality bases) assembled on 2005-08-09
GenBank Submission: BT023834
> LD25916.complete TGATGTTTCTTTCCTTTGATTTCTGATCCTTCTAAACGTAACTTCAAAAT GCTATTGAAAGTAGTGAATATAAATGGCTTGCAGCACCTGTTCGCCTGCA CTGAGGGGCAGCATGATGAAACCCTAACTATTCACGTTTTCCGTCCTCGC GAGAAGTGGACTTACTCCGAGACTTTGATGAAACGCGATTACCAGCAGCG TTTGAAAACGCTCAACGCGCGTGTGAAGTTTCCCGAGGAATTGGTGCGCC AGGTCCTGCTCAACAAGGATCCATTGCATGTCGAACAGGATTACCAGCAC CCATTGAACGTCCTGAAACTGAAGTATGCCATGGCGAATTTCAAAGTTTT CCTCAAGTGGGAATGGCACCTGAGACCCATGGATGCCGCACAGTTGTATA GCCAAATGTTCTTGAACACAATGTCCACGGCTTTGGGACTACGGGTTCAG ATACCCCTTCTGCTAGGGATTATCCATGCCAAGGACAAGGAGCTGAACCA GTATCGCACCGAGGGATGCCAGCTGCGCAAAGTGACTGTGGAAACCAAGC CCTTTGATCTCGAGGCTTTTATGAATAAGCACAAGCAATTGCTGGACTGT TCCGCTGCCTACCAGAAGGCGCAGAGTACTTTTTTTGCTGATAAGCCATC GCCTAATTGGACATCGCTTTCTTCGCCATGGGCACGGGATGTCGCGCCCT ATTCTTCGTCAAACGGCTACTTTGCTTCTTCGAAGGCATCAAGCCCAAAA GAAGCTCCTCGCATTAGGAAGCGCAAGGCTCTTGAAATCAATACCAATCA TATGGAGCGCAAGGTAATGCAGCGCCGCTCCAATCCGCTTGTCGAGTACA AAAGCTCGCAGAGTTCCCAAGAGACAAACGTAAATTTAATCTTAAAAGTA GAGCTAGCGCCAATGGACACCAAGAATGATCTCACTGATGATGACGAAGA GTCATCCACATCTTCGGGGCTTTCCCAAGGATGGTCGGCCAAACTAACCA AATTTAATCCAACCGTCGGAAGTGGTGTATATGAACTTGCATCTCAGGAA CAGTATGCTTCTTCTGAAGATGAGGATGCTTCTTCTAAAAATGGGGATAC TTCTTCTAAATATGAGGATGCTTCTTCTAAAGATGAGGATGCTTCTTCCA AAGATGAGAATACTTCTTCTAAAGATGAGGATGCTCCGTCTAAAGATGAG GATACTTCTTCTAAAGATGAGGATGCTTCTTCTGAATATGAAGAGGTCAC TAGGGAGGCATCGAACGCTTTCAATTTCGTCATAAAGAAGGTTGAATCTT TAAAAGAGTTTTACGATGCCCCAAGGGAACTCATCCAAGAACCCAAAGTC GGAAAGTCCGATCAGAATTGGGATTTAATTCTTCGAACTGTGCTGGAAGA TATCAAAGCCGTACTGATTTACTCAACTGAACGCATCGAAAAAGCGATCC AGAGCTATATCAATAAGTTAGCGCAAAAATAATTTGGAAACGATCTCATT CTAAATGGTGCTACAAGCAAAACTTCACACTTAGTACATACGTTTTTTTT TTTTTGTTTTTTTTTTTTTTTTTAGATAAAAACAAGTCCTTAGTGATAAA AGGATAAAATACATGATTCCATTTGTTGATTAGGTATTCGTACCTAAGTC CATCGAACAGCAATCAAATGAAACAAAGAACTGTATAGTGTTGTAGATAT TAAAAAGACGTCTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTA AAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATAAAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12728-RA | 1874 | CG12728-RA | 55..1774 | 1..1720 | 8570 | 99.8 | Plus |
CG32756-RA | 2131 | CG32756-RA | 4..1226 | 1..1223 | 5590 | 97.4 | Plus |
CG32756-RA | 2131 | CG32756-RA | 1492..1661 | 1552..1721 | 655 | 92.3 | Plus |
CG32756-RA | 2131 | CG32756-RA | 1061..1253 | 1076..1271 | 565 | 86.7 | Plus |
CG32756-RA | 2131 | CG32756-RA | 1408..1512 | 1459..1563 | 375 | 90.4 | Plus |
CG32756-RA | 2131 | CG32756-RA | 1297..1410 | 1336..1449 | 285 | 83.3 | Plus |
CG12728-RA | 1874 | CG12728-RA | 1807..1874 | 1578..1646 | 245 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5835984..5836938 | 766..1720 | 4745 | 99.8 | Plus |
chrX | 22417052 | chrX | 5839060..5839952 | 766..1721 | 2365 | 84.6 | Plus |
chrX | 22417052 | chrX | 5835688..5835925 | 531..768 | 1190 | 100 | Plus |
chrX | 22417052 | chrX | 5838764..5839001 | 531..768 | 1145 | 98.7 | Plus |
chrX | 22417052 | chrX | 5834948..5835154 | 1..207 | 1035 | 100 | Plus |
chrX | 22417052 | chrX | 5838020..5838226 | 1..207 | 1035 | 100 | Plus |
chrX | 22417052 | chrX | 5835216..5835401 | 208..393 | 930 | 100 | Plus |
chrX | 22417052 | chrX | 5838288..5838473 | 208..393 | 930 | 100 | Plus |
chrX | 22417052 | chrX | 5835466..5835606 | 392..532 | 705 | 100 | Plus |
chrX | 22417052 | chrX | 5838538..5838675 | 392..529 | 675 | 99.3 | Plus |
chrX | 22417052 | chrX | 5836965..5837091 | 1578..1705 | 470 | 93 | Plus |
chrX | 22417052 | chrX | 5836276..5836417 | 1100..1241 | 455 | 88 | Plus |
chrX | 22417052 | chrX | 5836318..5836459 | 1058..1199 | 455 | 88 | Plus |
chrX | 22417052 | chrX | 5836273..5836396 | 1118..1241 | 410 | 88.7 | Plus |
chrX | 22417052 | chrX | 5836336..5836459 | 1055..1178 | 410 | 88.7 | Plus |
chrX | 22417052 | chrX | 5839392..5839517 | 1053..1181 | 325 | 85.3 | Plus |
chrX | 22417052 | chrX | 5839352..5839454 | 1139..1241 | 320 | 87.4 | Plus |
chrX | 22417052 | chrX | 5836273..5836366 | 1139..1232 | 305 | 88.3 | Plus |
chrX | 22417052 | chrX | 5836357..5836450 | 1055..1148 | 305 | 88.3 | Plus |
chrX | 22417052 | chrX | 5836276..5836354 | 1163..1241 | 275 | 89.9 | Plus |
chrX | 22417052 | chrX | 5836381..5836459 | 1058..1136 | 275 | 89.9 | Plus |
chrX | 22417052 | chrX | 5839355..5839433 | 1163..1241 | 275 | 89.9 | Plus |
chrX | 22417052 | chrX | 5836273..5836333 | 1181..1241 | 185 | 86.9 | Plus |
chrX | 22417052 | chrX | 5836399..5836459 | 1055..1115 | 185 | 86.9 | Plus |
chrX | 22417052 | chrX | 5839352..5839412 | 1181..1241 | 185 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 5943671..5944625 | 766..1720 | 4745 | 99.8 | Plus |
X | 23542271 | X | 5946753..5947645 | 766..1721 | 2365 | 84.6 | Plus |
X | 23542271 | X | 5943375..5943612 | 531..768 | 1190 | 100 | Plus |
X | 23542271 | X | 5946457..5946694 | 531..768 | 1145 | 98.7 | Plus |
X | 23542271 | X | 5942635..5942841 | 1..207 | 1035 | 100 | Plus |
X | 23542271 | X | 5945713..5945919 | 1..207 | 1035 | 100 | Plus |
X | 23542271 | X | 5942903..5943088 | 208..393 | 930 | 100 | Plus |
X | 23542271 | X | 5945981..5946166 | 208..393 | 930 | 100 | Plus |
X | 23542271 | X | 5943153..5943293 | 392..532 | 705 | 100 | Plus |
X | 23542271 | X | 5946231..5946368 | 392..529 | 675 | 99.3 | Plus |
X | 23542271 | X | 5944658..5944784 | 1578..1705 | 470 | 93 | Plus |
X | 23542271 | X | 5943963..5944104 | 1100..1241 | 455 | 88 | Plus |
X | 23542271 | X | 5944005..5944146 | 1058..1199 | 455 | 88 | Plus |
X | 23542271 | X | 5943960..5944083 | 1118..1241 | 410 | 88.7 | Plus |
X | 23542271 | X | 5944023..5944146 | 1055..1178 | 410 | 88.7 | Plus |
X | 23542271 | X | 5947085..5947210 | 1053..1181 | 325 | 85.3 | Plus |
X | 23542271 | X | 5947045..5947147 | 1139..1241 | 320 | 87.4 | Plus |
X | 23542271 | X | 5943960..5944053 | 1139..1232 | 305 | 88.3 | Plus |
X | 23542271 | X | 5944044..5944137 | 1055..1148 | 305 | 88.3 | Plus |
X | 23542271 | X | 5943963..5944041 | 1163..1241 | 275 | 89.9 | Plus |
X | 23542271 | X | 5944068..5944146 | 1058..1136 | 275 | 89.9 | Plus |
X | 23542271 | X | 5947048..5947126 | 1163..1241 | 275 | 89.9 | Plus |
X | 23542271 | X | 5943960..5944020 | 1181..1241 | 185 | 86.9 | Plus |
X | 23542271 | X | 5944086..5944146 | 1055..1115 | 185 | 86.9 | Plus |
X | 23542271 | X | 5947045..5947105 | 1181..1241 | 185 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 5951769..5952723 | 766..1720 | 4745 | 99.7 | Plus |
X | 23527363 | X | 5954851..5955308 | 766..1223 | 1840 | 94.3 | Plus |
X | 23527363 | X | 5951473..5951710 | 531..768 | 1190 | 100 | Plus |
X | 23527363 | X | 5954555..5954792 | 531..768 | 1145 | 98.7 | Plus |
X | 23527363 | X | 5953811..5954017 | 1..207 | 1035 | 100 | Plus |
X | 23527363 | X | 5950733..5950939 | 1..207 | 1035 | 100 | Plus |
X | 23527363 | X | 5954079..5954264 | 208..393 | 930 | 100 | Plus |
X | 23527363 | X | 5951001..5951186 | 208..393 | 930 | 100 | Plus |
X | 23527363 | X | 5951251..5951391 | 392..532 | 705 | 100 | Plus |
X | 23527363 | X | 5954329..5954466 | 392..529 | 675 | 99.2 | Plus |
X | 23527363 | X | 5955574..5955743 | 1552..1721 | 655 | 92.3 | Plus |
X | 23527363 | X | 5955143..5955335 | 1076..1271 | 565 | 86.7 | Plus |
X | 23527363 | X | 5952756..5952882 | 1578..1705 | 480 | 92.9 | Plus |
X | 23527363 | X | 5955490..5955594 | 1459..1563 | 375 | 90.4 | Plus |
X | 23527363 | X | 5955379..5955492 | 1336..1449 | 285 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 2586..2626 | 1698..1738 | 115 | 75.6 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 1404..1485 | 1695..1780 | 115 | 61.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5834948..5835154 | 1..207 | 100 | -> | Plus |
chrX | 5835216..5835401 | 208..393 | 100 | -> | Plus |
chrX | 5835468..5835606 | 394..532 | 100 | -> | Plus |
chrX | 5835690..5835924 | 533..767 | 100 | -> | Plus |
chrX | 5835986..5836935 | 768..1717 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 1..1434 | 49..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 1..1434 | 49..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 1..1434 | 49..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 1..1434 | 49..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 1..1434 | 49..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 28..1509 | 1..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 28..1744 | 1..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RB | 30..1746 | 1..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RA | 28..1509 | 1..1482 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12728-RB | 30..1746 | 1..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5942903..5943088 | 208..393 | 100 | -> | Plus |
X | 5943155..5943293 | 394..532 | 100 | -> | Plus |
X | 5942635..5942841 | 1..207 | 100 | -> | Plus |
X | 5943377..5943611 | 533..767 | 100 | -> | Plus |
X | 5943673..5944622 | 768..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5942903..5943088 | 208..393 | 100 | -> | Plus |
X | 5943155..5943293 | 394..532 | 100 | -> | Plus |
X | 5942635..5942841 | 1..207 | 100 | -> | Plus |
X | 5943377..5943611 | 533..767 | 100 | -> | Plus |
X | 5943673..5944622 | 768..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5942903..5943088 | 208..393 | 100 | -> | Plus |
X | 5943155..5943293 | 394..532 | 100 | -> | Plus |
X | 5942635..5942841 | 1..207 | 100 | -> | Plus |
X | 5943377..5943611 | 533..767 | 100 | -> | Plus |
X | 5943673..5944622 | 768..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5837188..5837326 | 394..532 | 100 | -> | Plus |
arm_X | 5836668..5836874 | 1..207 | 100 | -> | Plus |
arm_X | 5836936..5837121 | 208..393 | 100 | -> | Plus |
arm_X | 5837410..5837644 | 533..767 | 100 | -> | Plus |
arm_X | 5837706..5838655 | 768..1717 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5951475..5951709 | 533..767 | 100 | -> | Plus |
X | 5951771..5952720 | 768..1717 | 99 | Plus | |
X | 5950733..5950939 | 1..207 | 100 | -> | Plus |
X | 5951001..5951186 | 208..393 | 100 | -> | Plus |
X | 5951253..5951391 | 394..532 | 100 | -> | Plus |
Translation from 48 to 1481
> LD25916.pep MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE DIKAVLIYSTERIEKAIQSYINKLAQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22081-PA | 387 | GF22081-PA | 1..282 | 1..279 | 441 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18802-PA | 422 | GG18802-PA | 1..412 | 1..468 | 1014 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24377-PA | 285 | GH24377-PA | 13..257 | 38..275 | 338 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12728-PB | 477 | CG12728-PB | 1..477 | 1..477 | 2449 | 100 | Plus |
CG12728-PA | 477 | CG12728-PA | 1..477 | 1..477 | 2449 | 100 | Plus |
CG32756-PB | 459 | CG32756-PB | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG32756-PA | 459 | CG32756-PA | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG14692-PE | 2851 | CG14692-PE | 1136..1386 | 182..442 | 164 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15317-PA | 520 | GI15317-PA | 8..206 | 13..189 | 268 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11841-PA | 429 | GL11841-PA | 24..259 | 38..275 | 426 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25142-PA | 429 | GA25142-PA | 24..259 | 38..275 | 435 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12453-PA | 348 | GM12453-PA | 1..340 | 1..364 | 1283 | 73.4 | Plus |
Dsec\GM12451-PA | 162 | GM12451-PA | 1..161 | 1..161 | 734 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16770-PA | 355 | GD16770-PA | 1..344 | 1..368 | 1308 | 73.6 | Plus |
Dsim\GD16768-PA | 162 | GD16768-PA | 1..161 | 1..161 | 730 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14752-PA | 367 | GJ14752-PA | 1..296 | 1..274 | 424 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20128-PA | 349 | GK20128-PA | 1..274 | 1..275 | 398 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17564-PA | 415 | GE17564-PA | 1..408 | 1..471 | 1165 | 51.9 | Plus |
Translation from 48 to 1481
> LD25916.hyp MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE DIKAVLIYSTERIEKAIQSYINKLAQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12728-PB | 477 | CG12728-PB | 1..477 | 1..477 | 2449 | 100 | Plus |
CG12728-PA | 477 | CG12728-PA | 1..477 | 1..477 | 2449 | 100 | Plus |
CG32756-PB | 459 | CG32756-PB | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG32756-PA | 459 | CG32756-PA | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG14692-PE | 2851 | CG14692-PE | 1136..1386 | 182..442 | 164 | 26.3 | Plus |