Clone LD25916 Report

Search the DGRC for LD25916

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:259
Well:16
Vector:pOT2
Associated Gene/TranscriptCG12728-RA
Protein status:LD25916.pep: gold
Preliminary Size:1948
Sequenced Size:1807

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12728 2003-01-01 Sim4 clustering to Release 3
CG12728 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LD25916.complete Sequence

1807 bp (1807 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023834

> LD25916.complete
TGATGTTTCTTTCCTTTGATTTCTGATCCTTCTAAACGTAACTTCAAAAT
GCTATTGAAAGTAGTGAATATAAATGGCTTGCAGCACCTGTTCGCCTGCA
CTGAGGGGCAGCATGATGAAACCCTAACTATTCACGTTTTCCGTCCTCGC
GAGAAGTGGACTTACTCCGAGACTTTGATGAAACGCGATTACCAGCAGCG
TTTGAAAACGCTCAACGCGCGTGTGAAGTTTCCCGAGGAATTGGTGCGCC
AGGTCCTGCTCAACAAGGATCCATTGCATGTCGAACAGGATTACCAGCAC
CCATTGAACGTCCTGAAACTGAAGTATGCCATGGCGAATTTCAAAGTTTT
CCTCAAGTGGGAATGGCACCTGAGACCCATGGATGCCGCACAGTTGTATA
GCCAAATGTTCTTGAACACAATGTCCACGGCTTTGGGACTACGGGTTCAG
ATACCCCTTCTGCTAGGGATTATCCATGCCAAGGACAAGGAGCTGAACCA
GTATCGCACCGAGGGATGCCAGCTGCGCAAAGTGACTGTGGAAACCAAGC
CCTTTGATCTCGAGGCTTTTATGAATAAGCACAAGCAATTGCTGGACTGT
TCCGCTGCCTACCAGAAGGCGCAGAGTACTTTTTTTGCTGATAAGCCATC
GCCTAATTGGACATCGCTTTCTTCGCCATGGGCACGGGATGTCGCGCCCT
ATTCTTCGTCAAACGGCTACTTTGCTTCTTCGAAGGCATCAAGCCCAAAA
GAAGCTCCTCGCATTAGGAAGCGCAAGGCTCTTGAAATCAATACCAATCA
TATGGAGCGCAAGGTAATGCAGCGCCGCTCCAATCCGCTTGTCGAGTACA
AAAGCTCGCAGAGTTCCCAAGAGACAAACGTAAATTTAATCTTAAAAGTA
GAGCTAGCGCCAATGGACACCAAGAATGATCTCACTGATGATGACGAAGA
GTCATCCACATCTTCGGGGCTTTCCCAAGGATGGTCGGCCAAACTAACCA
AATTTAATCCAACCGTCGGAAGTGGTGTATATGAACTTGCATCTCAGGAA
CAGTATGCTTCTTCTGAAGATGAGGATGCTTCTTCTAAAAATGGGGATAC
TTCTTCTAAATATGAGGATGCTTCTTCTAAAGATGAGGATGCTTCTTCCA
AAGATGAGAATACTTCTTCTAAAGATGAGGATGCTCCGTCTAAAGATGAG
GATACTTCTTCTAAAGATGAGGATGCTTCTTCTGAATATGAAGAGGTCAC
TAGGGAGGCATCGAACGCTTTCAATTTCGTCATAAAGAAGGTTGAATCTT
TAAAAGAGTTTTACGATGCCCCAAGGGAACTCATCCAAGAACCCAAAGTC
GGAAAGTCCGATCAGAATTGGGATTTAATTCTTCGAACTGTGCTGGAAGA
TATCAAAGCCGTACTGATTTACTCAACTGAACGCATCGAAAAAGCGATCC
AGAGCTATATCAATAAGTTAGCGCAAAAATAATTTGGAAACGATCTCATT
CTAAATGGTGCTACAAGCAAAACTTCACACTTAGTACATACGTTTTTTTT
TTTTTGTTTTTTTTTTTTTTTTTAGATAAAAACAAGTCCTTAGTGATAAA
AGGATAAAATACATGATTCCATTTGTTGATTAGGTATTCGTACCTAAGTC
CATCGAACAGCAATCAAATGAAACAAAGAACTGTATAGTGTTGTAGATAT
TAAAAAGACGTCTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTA
AAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATAAAAAAAAAAA
AAAAAAA

LD25916.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12728-RA 1874 CG12728-RA 55..1774 1..1720 8570 99.8 Plus
CG32756-RA 2131 CG32756-RA 4..1226 1..1223 5590 97.4 Plus
CG32756-RA 2131 CG32756-RA 1492..1661 1552..1721 655 92.3 Plus
CG32756-RA 2131 CG32756-RA 1061..1253 1076..1271 565 86.7 Plus
CG32756-RA 2131 CG32756-RA 1408..1512 1459..1563 375 90.4 Plus
CG32756-RA 2131 CG32756-RA 1297..1410 1336..1449 285 83.3 Plus
CG12728-RA 1874 CG12728-RA 1807..1874 1578..1646 245 92.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5835984..5836938 766..1720 4745 99.8 Plus
chrX 22417052 chrX 5839060..5839952 766..1721 2365 84.6 Plus
chrX 22417052 chrX 5835688..5835925 531..768 1190 100 Plus
chrX 22417052 chrX 5838764..5839001 531..768 1145 98.7 Plus
chrX 22417052 chrX 5834948..5835154 1..207 1035 100 Plus
chrX 22417052 chrX 5838020..5838226 1..207 1035 100 Plus
chrX 22417052 chrX 5835216..5835401 208..393 930 100 Plus
chrX 22417052 chrX 5838288..5838473 208..393 930 100 Plus
chrX 22417052 chrX 5835466..5835606 392..532 705 100 Plus
chrX 22417052 chrX 5838538..5838675 392..529 675 99.3 Plus
chrX 22417052 chrX 5836965..5837091 1578..1705 470 93 Plus
chrX 22417052 chrX 5836276..5836417 1100..1241 455 88 Plus
chrX 22417052 chrX 5836318..5836459 1058..1199 455 88 Plus
chrX 22417052 chrX 5836273..5836396 1118..1241 410 88.7 Plus
chrX 22417052 chrX 5836336..5836459 1055..1178 410 88.7 Plus
chrX 22417052 chrX 5839392..5839517 1053..1181 325 85.3 Plus
chrX 22417052 chrX 5839352..5839454 1139..1241 320 87.4 Plus
chrX 22417052 chrX 5836273..5836366 1139..1232 305 88.3 Plus
chrX 22417052 chrX 5836357..5836450 1055..1148 305 88.3 Plus
chrX 22417052 chrX 5836276..5836354 1163..1241 275 89.9 Plus
chrX 22417052 chrX 5836381..5836459 1058..1136 275 89.9 Plus
chrX 22417052 chrX 5839355..5839433 1163..1241 275 89.9 Plus
chrX 22417052 chrX 5836273..5836333 1181..1241 185 86.9 Plus
chrX 22417052 chrX 5836399..5836459 1055..1115 185 86.9 Plus
chrX 22417052 chrX 5839352..5839412 1181..1241 185 86.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5943671..5944625 766..1720 4745 99.8 Plus
X 23542271 X 5946753..5947645 766..1721 2365 84.6 Plus
X 23542271 X 5943375..5943612 531..768 1190 100 Plus
X 23542271 X 5946457..5946694 531..768 1145 98.7 Plus
X 23542271 X 5942635..5942841 1..207 1035 100 Plus
X 23542271 X 5945713..5945919 1..207 1035 100 Plus
X 23542271 X 5942903..5943088 208..393 930 100 Plus
X 23542271 X 5945981..5946166 208..393 930 100 Plus
X 23542271 X 5943153..5943293 392..532 705 100 Plus
X 23542271 X 5946231..5946368 392..529 675 99.3 Plus
X 23542271 X 5944658..5944784 1578..1705 470 93 Plus
X 23542271 X 5943963..5944104 1100..1241 455 88 Plus
X 23542271 X 5944005..5944146 1058..1199 455 88 Plus
X 23542271 X 5943960..5944083 1118..1241 410 88.7 Plus
X 23542271 X 5944023..5944146 1055..1178 410 88.7 Plus
X 23542271 X 5947085..5947210 1053..1181 325 85.3 Plus
X 23542271 X 5947045..5947147 1139..1241 320 87.4 Plus
X 23542271 X 5943960..5944053 1139..1232 305 88.3 Plus
X 23542271 X 5944044..5944137 1055..1148 305 88.3 Plus
X 23542271 X 5943963..5944041 1163..1241 275 89.9 Plus
X 23542271 X 5944068..5944146 1058..1136 275 89.9 Plus
X 23542271 X 5947048..5947126 1163..1241 275 89.9 Plus
X 23542271 X 5943960..5944020 1181..1241 185 86.9 Plus
X 23542271 X 5944086..5944146 1055..1115 185 86.9 Plus
X 23542271 X 5947045..5947105 1181..1241 185 86.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5951769..5952723 766..1720 4745 99.7 Plus
X 23527363 X 5954851..5955308 766..1223 1840 94.3 Plus
X 23527363 X 5951473..5951710 531..768 1190 100 Plus
X 23527363 X 5954555..5954792 531..768 1145 98.7 Plus
X 23527363 X 5953811..5954017 1..207 1035 100 Plus
X 23527363 X 5950733..5950939 1..207 1035 100 Plus
X 23527363 X 5954079..5954264 208..393 930 100 Plus
X 23527363 X 5951001..5951186 208..393 930 100 Plus
X 23527363 X 5951251..5951391 392..532 705 100 Plus
X 23527363 X 5954329..5954466 392..529 675 99.2 Plus
X 23527363 X 5955574..5955743 1552..1721 655 92.3 Plus
X 23527363 X 5955143..5955335 1076..1271 565 86.7 Plus
X 23527363 X 5952756..5952882 1578..1705 480 92.9 Plus
X 23527363 X 5955490..5955594 1459..1563 375 90.4 Plus
X 23527363 X 5955379..5955492 1336..1449 285 83.3 Plus
Blast to na_te.dros performed 2019-03-16 19:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 2586..2626 1698..1738 115 75.6 Plus
Tabor 7345 Tabor TABOR 7345bp 1404..1485 1695..1780 115 61.6 Plus

LD25916.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:37:03 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5834948..5835154 1..207 100 -> Plus
chrX 5835216..5835401 208..393 100 -> Plus
chrX 5835468..5835606 394..532 100 -> Plus
chrX 5835690..5835924 533..767 100 -> Plus
chrX 5835986..5836935 768..1717 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:00 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 1..1434 49..1482 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:12 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 1..1434 49..1482 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:38 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 1..1434 49..1482 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:53 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 1..1434 49..1482 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:20 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 1..1434 49..1482 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:23 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 28..1509 1..1482 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:12 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 28..1744 1..1717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:38 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RB 30..1746 1..1717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:53 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RA 28..1509 1..1482 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:20 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
CG12728-RB 30..1746 1..1717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:37:03 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
X 5942903..5943088 208..393 100 -> Plus
X 5943155..5943293 394..532 100 -> Plus
X 5942635..5942841 1..207 100 -> Plus
X 5943377..5943611 533..767 100 -> Plus
X 5943673..5944622 768..1717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:37:03 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
X 5942903..5943088 208..393 100 -> Plus
X 5943155..5943293 394..532 100 -> Plus
X 5942635..5942841 1..207 100 -> Plus
X 5943377..5943611 533..767 100 -> Plus
X 5943673..5944622 768..1717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:37:03 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
X 5942903..5943088 208..393 100 -> Plus
X 5943155..5943293 394..532 100 -> Plus
X 5942635..5942841 1..207 100 -> Plus
X 5943377..5943611 533..767 100 -> Plus
X 5943673..5944622 768..1717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:38 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5837188..5837326 394..532 100 -> Plus
arm_X 5836668..5836874 1..207 100 -> Plus
arm_X 5836936..5837121 208..393 100 -> Plus
arm_X 5837410..5837644 533..767 100 -> Plus
arm_X 5837706..5838655 768..1717 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:28 Download gff for LD25916.complete
Subject Subject Range Query Range Percent Splice Strand
X 5951475..5951709 533..767 100 -> Plus
X 5951771..5952720 768..1717 99   Plus
X 5950733..5950939 1..207 100 -> Plus
X 5951001..5951186 208..393 100 -> Plus
X 5951253..5951391 394..532 100 -> Plus

LD25916.pep Sequence

Translation from 48 to 1481

> LD25916.pep
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN
QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD
TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV
TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE
DIKAVLIYSTERIEKAIQSYINKLAQK*

LD25916.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22081-PA 387 GF22081-PA 1..282 1..279 441 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18802-PA 422 GG18802-PA 1..412 1..468 1014 45.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24377-PA 285 GH24377-PA 13..257 38..275 338 34.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12728-PB 477 CG12728-PB 1..477 1..477 2449 100 Plus
CG12728-PA 477 CG12728-PA 1..477 1..477 2449 100 Plus
CG32756-PB 459 CG32756-PB 1..459 1..473 2037 85.7 Plus
CG32756-PA 459 CG32756-PA 1..459 1..473 2037 85.7 Plus
CG14692-PE 2851 CG14692-PE 1136..1386 182..442 164 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15317-PA 520 GI15317-PA 8..206 13..189 268 36.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11841-PA 429 GL11841-PA 24..259 38..275 426 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25142-PA 429 GA25142-PA 24..259 38..275 435 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12453-PA 348 GM12453-PA 1..340 1..364 1283 73.4 Plus
Dsec\GM12451-PA 162 GM12451-PA 1..161 1..161 734 85.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16770-PA 355 GD16770-PA 1..344 1..368 1308 73.6 Plus
Dsim\GD16768-PA 162 GD16768-PA 1..161 1..161 730 85.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14752-PA 367 GJ14752-PA 1..296 1..274 424 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20128-PA 349 GK20128-PA 1..274 1..275 398 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17564-PA 415 GE17564-PA 1..408 1..471 1165 51.9 Plus

LD25916.hyp Sequence

Translation from 48 to 1481

> LD25916.hyp
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN
QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD
TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV
TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE
DIKAVLIYSTERIEKAIQSYINKLAQK*

LD25916.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12728-PB 477 CG12728-PB 1..477 1..477 2449 100 Plus
CG12728-PA 477 CG12728-PA 1..477 1..477 2449 100 Plus
CG32756-PB 459 CG32756-PB 1..459 1..473 2037 85.7 Plus
CG32756-PA 459 CG32756-PA 1..459 1..473 2037 85.7 Plus
CG14692-PE 2851 CG14692-PE 1136..1386 182..442 164 26.3 Plus