Clone LD25952 Report

Search the DGRC for LD25952

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:259
Well:52
Vector:pOT2
Associated Gene/TranscriptCG8814-RA
Protein status:LD25952.pep: gold
Preliminary Size:1910
Sequenced Size:1809

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18627 2001-01-01 Release 2 assignment
CG8814 2001-01-01 Release 2 assignment
CG8814 2001-07-04 Blastp of sequenced clone
CG8814 2003-01-01 Sim4 clustering to Release 3
CG8814 2008-04-29 Release 5.5 accounting
CG8814 2008-08-15 Release 5.9 accounting
CG8814 2008-12-18 5.12 accounting

Clone Sequence Records

LD25952.complete Sequence

1809 bp (1809 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051731

> LD25952.complete
CGATTTGCAGAGAGAGTTTTCGGGTTTTTGTTTAGTTTTATTTGATTGCA
ACTCGATTGGAACGACAGCGGTTGGCGCAGCACACAACAATTCCTCAGCG
AGGTCGATAAGAACGGGGGCCAAACTAAGAAAAAGCTCCAGCCGACTCGA
TTCGATTCGAAGCTCAGAAGATTGGACTTCAGAACTCGAACTTTGGCACC
ACAGCAGCGCATCCACGAACGTCGCACCCAAAAATTCATGAATGCCCAGC
AGCGGATTTGGACTCGGATTCGGAATCGGAATCAATAGCGAACGACAACA
ACAAAAGGGGGAGCCGAAAGTGGGGTTTGCAACACCGCGGATTGCACACA
ATAATTAGGTATGGCGGCGATTGAGGAGCGTTTCCAGGCGGCAGTCAATG
TGATAAAGGGTCTGCCCAAAAATGGCCCCTACCAGCCCAGCACCAGCATG
ATGCTCAAGTTCTACGGGCTGTTCAAACAGGCCACCGAGGGTAGACCAGA
TGTGGACAAGAAGCCCGGCTTTTGGGACATCGTAGGCAAGGCCAAGTGGC
AGGCATGGAACGATAACCGTCACTTGACCAAGGAGGAGGCGATGCAGCGC
TATGTGGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCACGGAGAA
TGTGCAGAACTTTGTGGGCAGCCTCGATAGTCTGGGAAACATCAGCCTGG
ACGAACTGGAGCTGGTCTCGCCCGGCATGAAGGAGCTGGCCGAGTCGCAT
CCCAACTCGCCGTTCCACTCGCGCACCAACAGTCCCCAGCACGGCTCCAG
TTGTAATGGCGAACCGGAGCCGGAACCTCAGGCGACTAGCACCGCACCGC
TGGCCACATCCGAAACGATTAAGGAGAATGGCCATAGTTCGCCGCCACTG
ACCAATGGCTATGGACCTAAGCCAACAGCAAGCTACACACAACATGACAC
GCACAACTTTACGAGCAACAGCAGCGTGGCCATCGTGGATCCCTCGGACG
ATGAGTACGACGATCCCTACGATCTCAGCCACGAGCTGACCCAGGCGATT
GGCCAGAACACGGACCTGCTGCGTCAAATCCAGGCTGCTATCACACGGAT
GAACAGCGATGTGGGCGCAGTGCAGCAGCGCGTTCGCAGCCTGGAGCAGT
CGCTCAACGAACTTCGCAGCGGCCAAAAGGCAGCGAAAGGAACGGTGGCG
CAGCCACGATCACTGCCCGCCTGGTGGCCCTTCAGGAACATCTCCCCGCT
CTGGTTTGCCGTCCTCATCCTGTGGCCTTTCCTGGTGAGGCGGTTCGCGC
GGATGCTTCAGTCCAATCCGCAGCGCAGGCACTGACGCAGGAAAGCTATA
CTTGCGGAGGGCGGAACATGTGGTAGTTAAATTTTATCTTCGGTTACGGG
CACGAGCTTGGTCTTTAGCTTTCTTCTATCCTAGAAAGCGCTTCAGTTAT
TGTACAGAGTTGGCCTTATTTATACCTTACTTACCCCCATGGTTATCCAG
TTGCAATATCTCTACCCCCTTTTGTACACGTCTATATATGTATATTGAAT
GTATATTTATTTCGTACACACAAATCGCGACCTTTTTGTCACATTCCCCA
TCTGATTTAGTTCGTAAGTCGAATGTTTTGGCAATTTTGTCCAGCAGAAG
GCGAGTTTTAGCCACCTGAAAGCGCCGATCTACTGAAAATACGGTTGTAA
GCGTATACTTTATTGTGCATTATTTGTTGTTAATTATAATTTTTGTAATA
AAGCAAAAAAAAAGTGAGAAAAAAAAATAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAA

LD25952.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8814-RA 1870 CG8814-RA 108..1870 1..1763 8815 100 Plus
Prx6005.a 824 Prx6005.a 745..824 1769..1690 400 100 Minus
Prx6005-RA 872 Prx6005-RA 793..872 1769..1690 400 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2875034..2876060 357..1383 5090 99.7 Plus
chr2L 23010047 chr2L 2876433..2876810 1384..1761 1875 99.7 Plus
chr2L 23010047 chr2L 2874557..2874917 1..361 1805 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2875384..2876410 357..1383 5135 100 Plus
2L 23513712 2L 2876784..2877169 1384..1769 1930 100 Plus
2L 23513712 2L 2874907..2875267 1..361 1805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2875384..2876410 357..1383 5135 100 Plus
2L 23513712 2L 2876784..2877169 1384..1769 1930 100 Plus
2L 23513712 2L 2874907..2875267 1..361 1805 100 Plus
Blast to na_te.dros performed 2019-03-15 13:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1512..1595 1698..1779 126 65.9 Plus

LD25952.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:38:14 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2874557..2874914 1..358 100 -> Plus
chr2L 2875036..2876060 359..1383 99 -> Plus
chr2L 2876433..2876810 1384..1763 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:03 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 1..975 361..1335 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:15 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 1..975 361..1335 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:06:55 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 1..975 361..1335 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:26 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 1..975 361..1335 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:35:39 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 1..975 361..1335 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:59 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 36..1798 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:15 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 36..1803 1..1768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:06:55 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 36..1803 1..1768 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:26 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 36..1798 1..1763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:35:39 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
CG8814-RA 18..1785 1..1768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:14 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2874907..2875264 1..358 100 -> Plus
2L 2875386..2876410 359..1383 100 -> Plus
2L 2876784..2877154 1384..1754 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:14 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2874907..2875264 1..358 100 -> Plus
2L 2875386..2876410 359..1383 100 -> Plus
2L 2876784..2877154 1384..1754 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:38:14 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2874907..2875264 1..358 100 -> Plus
2L 2875386..2876410 359..1383 100 -> Plus
2L 2876784..2877154 1384..1754 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:06:55 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2876784..2877154 1384..1754 100 -> Plus
arm_2L 2874907..2875264 1..358 100 -> Plus
arm_2L 2875386..2876410 359..1383 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:29 Download gff for LD25952.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2874907..2875264 1..358 100 -> Plus
2L 2875386..2876410 359..1383 100 -> Plus
2L 2876784..2877154 1384..1754 100 -> Plus

LD25952.pep Sequence

Translation from 360 to 1334

> LD25952.pep
MAAIEERFQAAVNVIKGLPKNGPYQPSTSMMLKFYGLFKQATEGRPDVDK
KPGFWDIVGKAKWQAWNDNRHLTKEEAMQRYVESLQEIIETMSFTENVQN
FVGSLDSLGNISLDELELVSPGMKELAESHPNSPFHSRTNSPQHGSSCNG
EPEPEPQATSTAPLATSETIKENGHSSPPLTNGYGPKPTASYTQHDTHNF
TSNSSVAIVDPSDDEYDDPYDLSHELTQAIGQNTDLLRQIQAAITRMNSD
VGAVQQRVRSLEQSLNELRSGQKAAKGTVAQPRSLPAWWPFRNISPLWFA
VLILWPFLVRRFARMLQSNPQRRH*

LD25952.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14989-PA 323 GF14989-PA 3..322 2..323 1264 74.9 Plus
Dana\GF24791-PA 84 GF24791-PA 10..74 18..83 150 47 Plus
Dana\GF25010-PA 84 GF25010-PA 4..74 8..83 142 42.1 Plus
Dana\GF25011-PA 85 GF25011-PA 1..81 4..89 142 37.2 Plus
Dana\GF14408-PA 88 GF14408-PA 13..81 20..89 141 41.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24896-PA 321 GG24896-PA 1..321 1..324 1634 94.1 Plus
Dere\GG14406-PA 86 GG14406-PA 2..82 4..89 158 39.5 Plus
Dere\GG14997-PA 84 GG14997-PA 10..74 18..83 157 50 Plus
Dere\GG23473-PA 90 GG23473-PA 1..83 1..89 149 38.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10684-PA 318 GH10684-PA 1..315 1..318 1068 66.1 Plus
Dgri\GH14518-PA 87 GH14518-PA 2..83 3..89 159 41.4 Plus
Dgri\GH11506-PA 90 GH11506-PA 1..83 1..89 152 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8814-PA 324 CG8814-PA 1..324 1..324 1711 100 Plus
Acbp2-PA 86 CG8627-PA 2..82 4..89 161 39.5 Plus
Acbp2-PB 86 CG8627-PB 2..82 4..89 161 39.5 Plus
Acbp1-PB 90 CG8498-PB 1..83 1..89 151 38.2 Plus
Acbp1-PA 90 CG8498-PA 1..83 1..89 151 38.2 Plus
Acbp4-PA 84 CG8629-PA 10..74 18..83 148 47 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11160-PA 322 GI11160-PA 1..319 1..318 1114 69.8 Plus
Dmoj\GI17002-PA 90 GI17002-PA 1..88 1..94 143 35.1 Plus
Dmoj\GI13295-PA 87 GI13295-PA 2..83 3..89 141 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26292-PA 318 GL26292-PA 1..317 1..323 1335 78.5 Plus
Dper\GL19321-PA 90 GL19321-PA 1..88 1..94 147 37.2 Plus
Dper\GL25142-PA 84 GL25142-PA 10..78 18..87 147 44.3 Plus
Dper\GL25029-PA 87 GL25029-PA 2..83 3..89 146 37.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21340-PA 318 GA21340-PA 1..317 1..323 1336 78.5 Plus
Dpse\GA21120-PA 90 GA21120-PA 1..88 1..94 154 38.3 Plus
Dpse\GA21220-PA 84 GA21220-PA 10..78 18..87 147 44.3 Plus
Dpse\GA21218-PA 87 GA21218-PA 2..83 3..89 145 37.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18376-PA 324 GM18376-PA 1..324 1..324 1681 96.3 Plus
Dsec\GM14822-PA 86 GM14822-PA 2..82 4..89 150 38.4 Plus
Dsec\GM13159-PA 90 GM13159-PA 1..83 1..89 149 38.2 Plus
Dsec\GM13788-PA 84 GM13788-PA 10..74 18..83 148 47 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23191-PA 324 GD23191-PA 1..324 1..324 1676 96 Plus
Dsim\GD13995-PA 86 GD13995-PA 2..82 4..89 153 39.5 Plus
Dsim\GD22437-PA 90 GD22437-PA 1..83 1..89 149 38.2 Plus
Dsim\GD13089-PA 84 GD13089-PA 10..74 18..83 148 47 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18322-PA 316 GJ18322-PA 1..313 1..318 1089 69.1 Plus
Dvir\GJ24270-PA 90 GJ24270-PA 1..83 1..89 151 39.3 Plus
Dvir\GJ12061-PA 87 GJ12061-PA 2..76 3..82 141 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24284-PA 331 GK24284-PA 1..330 1..323 1295 76.9 Plus
Dwil\GK23743-PA 90 GK23743-PA 1..83 1..89 158 40.4 Plus
Dwil\GK16653-PA 87 GK16653-PA 2..83 3..89 151 39.1 Plus
Dwil\GK17538-PA 84 GK17538-PA 10..78 18..87 146 44.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18189-PA 323 GE18189-PA 1..323 1..324 1637 94.1 Plus
Dyak\GE20443-PA 84 GE20443-PA 10..74 18..83 152 48.5 Plus
Dyak\GE11169-PA 90 GE11169-PA 1..83 1..89 152 39.3 Plus
Dyak\GE21596-PA 86 GE21596-PA 2..82 4..89 150 38.4 Plus

LD25952.hyp Sequence

Translation from 360 to 1334

> LD25952.hyp
MAAIEERFQAAVNVIKGLPKNGPYQPSTSMMLKFYGLFKQATEGRPDVDK
KPGFWDIVGKAKWQAWNDNRHLTKEEAMQRYVESLQEIIETMSFTENVQN
FVGSLDSLGNISLDELELVSPGMKELAESHPNSPFHSRTNSPQHGSSCNG
EPEPEPQATSTAPLATSETIKENGHSSPPLTNGYGPKPTASYTQHDTHNF
TSNSSVAIVDPSDDEYDDPYDLSHELTQAIGQNTDLLRQIQAAITRMNSD
VGAVQQRVRSLEQSLNELRSGQKAAKGTVAQPRSLPAWWPFRNISPLWFA
VLILWPFLVRRFARMLQSNPQRRH*

LD25952.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8814-PA 324 CG8814-PA 1..324 1..324 1711 100 Plus
Dbi-PA 86 CG8627-PA 2..82 4..89 161 39.5 Plus
Dbi-PB 86 CG8627-PB 2..82 4..89 161 39.5 Plus
CG8498-PB 90 CG8498-PB 1..83 1..89 151 38.2 Plus
CG8498-PA 90 CG8498-PA 1..83 1..89 151 38.2 Plus