Clone LD26002 Report

Search the DGRC for LD26002

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:260
Well:2
Vector:pOT2
Associated Gene/TranscriptCG33156-RA
Protein status:LD26002.pep: gold
Sequenced Size:1860

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33156 2002-11-12 Blastp of sequenced clone
CG33156 2008-04-29 Release 5.5 accounting
CG33156 2008-08-15 Release 5.9 accounting
CG33156 2008-12-18 5.12 accounting

Clone Sequence Records

LD26002.complete Sequence

1860 bp (1860 high quality bases) assembled on 2002-11-12

GenBank Submission: BT001490

> LD26002.complete
TTAACAATCAGTGCGGTGTACTGCATTTAAACGGCATATATAGCACGGCA
TTCCTCCAGATAGGGCACAGATGTGTCCCTGATCTCTCCAAGCATCTGCA
GGCATACAAGTGGAATGCCAGCACCAGAGGACCTAAACTCCTCCGACCAA
GAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCATCT
GTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGCTC
CGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTCGC
AGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCAT
CATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAAC
GTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTC
AGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCT
GCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATG
TCCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTG
ACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGT
TTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGC
AATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTC
ACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGA
GGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATC
GCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGAT
GGTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGT
CATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGG
ACGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACG
CCCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCA
TCCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTA
GCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTA
TCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAG
GCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATC
CCGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCC
CTAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGA
CGAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGA
TCGAGAACATGAAATTGTACGATGTGTAGTGCGTAAGTCCCTGCAGCTAA
TAGAAACCGTAGGTTAGGGCTTTTAGTTGTAGTTCTAATGCTTTCGCCCT
TTGCTTAGTGTGTAATTTTTGTAGTATTTTCGGTAACAAATTGTTTAAAC
ACATTTGCCAAATGTATGGAAATCATTTTATAACTTTTACTGTTCGAAAC
GCCAGTGCTCTTGCAATATTGTACATTTCAGCTAGTTAAATATAAATGCA
GTTGCAAACTGTAGCAAAAAGTTGTAGAGAGCATTGAATGAATGAATCTC
AAATCTTTGAGAATTAACATTAAAAAGTCCCACTTCTAAAAAGATAAGCA
ATTGAATTATATATTACTTAATAAAATAATACCTGTAAATTCAAAAAAAA
AAAAAAAAAA

LD26002.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RA 2024 CG33156-RA 91..1933 1..1843 9215 100 Plus
CG33156-RC 2120 CG33156-RC 477..2029 291..1843 7765 100 Plus
CG33156-RE 3426 CG33156-RE 776..2328 291..1843 7765 100 Plus
CG33156-RC 2120 CG33156-RC 31..321 1..291 1455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9435545..9436197 1842..1190 3265 100 Minus
chr2R 21145070 chr2R 9436255..9436837 1191..609 2915 100 Minus
chr2R 21145070 chr2R 9436900..9437218 608..290 1595 100 Minus
chr2R 21145070 chr2R 9439408..9439698 291..1 1455 100 Minus
chr2R 21145070 chr2R 9425499..9425769 1191..921 770 85.6 Minus
chr2R 21145070 chr2R 9426405..9426651 539..290 585 83.2 Minus
chr2R 21145070 chr2R 9425926..9426156 839..609 585 83.5 Minus
chr2R 21145070 chr2R 9425100..9425352 1442..1190 545 81 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548243..13548896 1843..1190 3270 100 Minus
2R 25286936 2R 13548954..13549536 1191..609 2915 100 Minus
2R 25286936 2R 13549599..13549917 608..290 1595 100 Minus
2R 25286936 2R 13552107..13552397 291..1 1455 100 Minus
2R 25286936 2R 13538198..13538468 1191..921 770 85.6 Minus
2R 25286936 2R 13538625..13538855 839..609 585 83.5 Minus
2R 25286936 2R 13539104..13539350 539..290 585 83.2 Minus
2R 25286936 2R 13537799..13538051 1442..1190 545 81 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13549442..13550095 1843..1190 3270 100 Minus
2R 25260384 2R 13550153..13550735 1191..609 2915 100 Minus
2R 25260384 2R 13550798..13551116 608..290 1595 100 Minus
2R 25260384 2R 13553306..13553596 291..1 1455 100 Minus
2R 25260384 2R 13539397..13539667 1191..921 770 85.6 Minus
2R 25260384 2R 13539824..13540054 839..609 585 83.5 Minus
2R 25260384 2R 13538998..13539250 1442..1190 545 81 Minus
2R 25260384 2R 13540392..13540549 447..290 490 87.3 Minus
2R 25260384 2R 13540303..13540380 539..462 210 84.6 Minus
Blast to na_te.dros performed on 2019-03-16 05:09:40 has no hits.

LD26002.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:10:26 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9436900..9437217 291..608 100 <- Minus
chr2R 9435545..9436195 1192..1842 100 <- Minus
chr2R 9436255..9436837 609..1191 100 <- Minus
chr2R 9439409..9439698 1..290 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:06 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 1..1365 115..1479 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:05:03 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 1..1365 115..1479 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:07:08 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 1..1365 115..1479 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:11 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 1..1365 115..1479 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:58:33 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 1..1365 115..1479 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:24:28 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 10..1851 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:05:03 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 10..1851 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:08 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 33..1874 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:11 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 10..1851 1..1842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:58:33 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RA 33..1874 1..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:26 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13552108..13552397 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:26 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13552108..13552397 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:26 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13552108..13552397 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:08 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9435749..9436399 1192..1842 100 <- Minus
arm_2R 9436459..9437041 609..1191 100 <- Minus
arm_2R 9437104..9437421 291..608 100 <- Minus
arm_2R 9439613..9439902 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:33 Download gff for LD26002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13549443..13550093 1192..1842 100 <- Minus
2R 13550153..13550735 609..1191 100 <- Minus
2R 13550798..13551115 291..608 100 <- Minus
2R 13553307..13553596 1..290 100   Minus

LD26002.pep Sequence

Translation from 114 to 1478

> LD26002.pep
MPAPEDLNSSDQEEYFCTEKDAAADGSHLLHAPGTVDGATASTSAPGLGG
NHMTSSWWWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWY
KPPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNE
NVRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPP
VMAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDR
KHEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYI
TSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPI
VVPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCI
CAQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMK
LYDV*

LD26002.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11176-PA 543 GF11176-PA 149..543 60..454 1933 95.4 Plus
Dana\GF11178-PA 544 GF11178-PA 103..543 55..453 1599 74.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22480-PA 643 GG22480-PA 249..643 60..454 2089 99.2 Plus
Dere\GG22483-PA 549 GG22483-PA 105..548 55..453 1614 74.6 Plus
Dere\GG22480-PA 643 GG22480-PA 60..117 1..58 268 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22631-PA 442 GH22631-PA 18..442 24..454 1962 85.8 Plus
Dgri\GH22633-PA 564 GH22633-PA 118..563 55..453 1636 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PA 454 CG33156-PA 1..454 1..454 2371 100 Plus
CG33156-PE 490 CG33156-PE 73..490 37..454 2067 96.2 Plus
CG33156-PF 450 CG33156-PF 56..450 60..454 2041 100 Plus
CG33156-PB 453 CG33156-PB 59..453 60..454 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 80..454 1933 100 Plus
CG6145-PA 520 CG6145-PA 53..519 38..453 1665 72.4 Plus
CG6145-PC 548 CG6145-PC 66..547 20..453 1631 69.4 Plus
CG6145-PF 484 CG6145-PF 45..483 60..453 1617 74.3 Plus
CG6145-PE 483 CG6145-PE 44..482 60..453 1617 74.3 Plus
CG6145-PB 420 CG6145-PB 1..419 80..453 1519 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21327-PA 412 GI21327-PA 1..412 53..454 1901 87.2 Plus
Dmoj\GI21329-PA 560 GI21329-PA 114..559 55..453 1641 74.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17065-PA 546 GL17065-PA 114..546 19..454 1922 86.9 Plus
Dper\GL17067-PA 557 GL17067-PA 104..549 55..453 1631 74.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17329-PA 605 GA17329-PA 214..605 60..454 1906 94.4 Plus
Dpse\GA24350-PA 557 GA24350-PA 104..549 55..453 1633 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20268-PA 523 GM20268-PA 129..523 60..454 2085 99.5 Plus
Dsec\GM20270-PA 548 GM20270-PA 104..547 55..453 1610 74.6 Plus
Dsec\GM20267-PA 59 GM20267-PA 1..59 1..59 314 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25753-PA 519 GD25753-PA 52..518 38..453 1655 73.3 Plus
Dsim\GD25751-PA 59 GD25751-PA 1..59 1..59 309 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19672-PA 448 GJ19672-PA 55..448 60..454 1912 90.9 Plus
Dvir\GJ19674-PA 557 GJ19674-PA 81..556 19..453 1625 70.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15608-PA 475 GK15608-PA 85..474 55..453 1907 91.7 Plus
Dwil\GK15610-PA 569 GK15610-PA 118..569 55..454 1625 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13352-PA 454 GE13352-PA 1..454 1..454 2374 98 Plus
Dyak\GE13354-PA 522 GE13354-PA 55..521 38..453 1659 73.3 Plus

LD26002.hyp Sequence

Translation from 114 to 1478

> LD26002.hyp
MPAPEDLNSSDQEEYFCTEKDAAADGSHLLHAPGTVDGATASTSAPGLGG
NHMTSSWWWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWY
KPPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNE
NVRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPP
VMAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDR
KHEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYI
TSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPI
VVPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCI
CAQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMK
LYDV*

LD26002.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PA 454 CG33156-PA 1..454 1..454 2371 100 Plus
CG33156-PE 490 CG33156-PE 73..490 37..454 2067 96.2 Plus
CG33156-PF 450 CG33156-PF 56..450 60..454 2041 100 Plus
CG33156-PB 453 CG33156-PB 59..453 60..454 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 80..454 1933 100 Plus