Clone LD26007 Report

Search the DGRC for LD26007

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:260
Well:7
Vector:pOT2
Associated Gene/Transcriptmeso18E-RA
Protein status:LD26007.pep: gold
Preliminary Size:2454
Sequenced Size:2494

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14233 2001-01-01 Release 2 assignment
CG14233 2001-09-19 Blastp of sequenced clone
CG14233 2003-01-01 Sim4 clustering to Release 3
meso18E 2008-04-29 Release 5.5 accounting
meso18E 2008-08-15 Release 5.9 accounting
meso18E 2008-12-18 5.12 accounting

Clone Sequence Records

LD26007.complete Sequence

2494 bp (2494 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058570

> LD26007.complete
TTAGTTGGAATCTCAGGACGGCGGACTACGGAGAACGGCACACACACGCA
CAATCGCCACGCTCTAGACGTTAAGTGTCACAAAGGTTACATTGCGTTCA
CACTAGTTACATTTGAAATGCAAACGCCGCCAGGCCAACGCAGCATCCGC
AAAAACAAACACAAAAACATAAGCAATAACAACAACAACAACAACGAGCA
GAGCCGGAGAGTCCACAATTGAAACACTCGAAAGAATCTGCAGCGGATCG
GAGAAGAGGATAGCAGCAGCAGAAATTAGACAATATCACCGTCCAGCATT
GCGCCTGCTCAGCAGAATCGGGCCATCCAGAAGCTGCTGACACCACAGAA
TTCCCAAATGGATACGAAGAATCCCCCGCCGGTGACGAGCAGCTATCACC
ACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTGCCGGAGTCG
GTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAGCGCGTTCCA
GTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCGCCGAGGTGC
TCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGCTGCAATCGG
TACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAATCCCGAGCG
CCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGGAGATCGAGG
AGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTGGCGCTCATA
ACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACGGCAGGCGGC
CGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGCACCAGCACA
GCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCACTCGCACGCC
CACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCGCTTCCTGCC
CAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCCCGGTCGGTG
GCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTCGACGAGAAT
CCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGCCGCCGTGGC
CGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCGGCGTTCAAA
TGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCAGCATTTAAA
AACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTTGGGCCACGC
GCCAATGGACGACTCTGGCGAAGCACCCGACTTCGAAAAGGACTGCAATG
GAGCACTCAACATGCACCACCAGAACAACAATCACAACGAGAACCACATA
TCAATGAAGTCGGAGCCACTTTCGGAGGGCGAGTTCAATCCGGACGACAT
CCAGCTGATGCAGACGAACTACAATGGAGCGCAGAACTACTATTCGCCGG
GCATGGATGCGAATATACTGCACCCCGATGTGATCGTCGACACGGACATC
CTGTCCGACTGCTCCTCATCGACAACGCTGAAGAAGAAGCGCAAGATGTC
CACCTCGACCGACGGCGACAGCACCAATTACGAGCTGATCGAGTATCTGA
AGCGGCGCGAGAAGCGGGACGAGGAGCTCCTCAAGCGGATGGATGCGCGC
GAGGACCGGCTGATGAACCTGCTGGAGCGCACGGTTGTGGCCATTGAAAC
GCTGGCCGTAAAGCGGGCACTTACGTTTCCAGTTAATCCAACCAAAGAGA
ACGCGCCAGCGACAGCCAGACCGTTGTCTCCGCCACCACCAGAGGCTCAG
TTTGCAGCGCCGCCAGCTACGCAGGAGCAGCCCACCAGTCCGGAACGCAA
CGGCATTGCGACAGGCAGGAGCGGCACCATTCCCGTCGCGAATCAGGATG
CCGCCATTGAGGTGCCAGACGACGGCGATAGCGGTGACGATGTTCAGGTG
AAGGACAAGCTGGCCAAGCTGACACCAAAGGCTGGCGGCGATGAACGGAC
GGATGGCAGGCAGACGTAGAATATAATGCATCCACTACTCGCTAGATCTA
CTTAAGACTTCTACCTACATACATATATATATATATAACCCTTCCCTACC
GCCACTCCTCTCACCGGATGGCGGCAGAGGATACAGTGCCAAAGAAGAGC
CATGTCTCGAATTTCAGTTGAGATTGCCATTTTTACTTAGAGAGCCTACA
CAAGTGCTTAGCGGACGAATGAAACTTAATTGCAATGTTGAATATTAAGC
GCCGCAATTTTTGTTGAAGCGATAATCTTAATTCACTTAATTAGCTTTTA
GTTAGGCGGAATCCCACCAGCGGATGCCGAATGAATCTCAACAGAGCCGG
ATTCACACCGCTACGATAATCTAGTTGGAGCTGCAACGGGGCTCAAATGC
ATTTGTGCAGTAACTAAAGCACAAACATTTCATTTTTTTTTTTTGTAATC
TAGATGAATACATGTACCATTTACAAAAAAAAAAAAAAAAAAAA

LD26007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E.c 3712 meso18E.c 1219..3704 1..2486 12430 100 Plus
meso18E.b 3464 meso18E.b 971..3456 1..2486 12430 100 Plus
meso18E-RA 2802 meso18E-RA 309..2794 1..2486 12430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19595190..19596240 2474..1427 5080 99.3 Minus
chrX 22417052 chrX 19596913..19597913 1360..360 4885 99.2 Minus
chrX 22417052 chrX 19600705..19601024 361..39 1520 98.8 Minus
chrX 22417052 chrX 19596311..19596379 1427..1359 345 100 Minus
chrX 22417052 chrX 19601718..19601755 38..1 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19706406..19707465 2486..1427 5300 100 Minus
X 23542271 X 19708150..19709150 1360..360 5005 100 Minus
X 23542271 X 19711944..19712268 361..37 1625 100 Minus
X 23542271 X 19707536..19707604 1427..1359 345 100 Minus
X 23542271 X 19712961..19712998 38..1 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19714504..19715563 2486..1427 5300 100 Minus
X 23527363 X 19716248..19717248 1360..360 5005 100 Minus
X 23527363 X 19720042..19720366 361..37 1625 100 Minus
X 23527363 X 19715634..19715702 1427..1359 345 100 Minus
X 23527363 X 19721059..19721096 38..1 190 100 Minus
Blast to na_te.dros performed 2019-03-16 04:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6859 140..275 147 60.1 Plus

LD26007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:07:00 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19595190..19596239 1428..2474 99 <- Minus
chrX 19596311..19596379 1359..1427 100 <- Minus
chrX 19596915..19597912 361..1358 99 <- Minus
chrX 19600706..19601025 38..360 86 <- Minus
chrX 19601719..19601755 1..37 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:08 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 1..1662 358..2019 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:50 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 1..1662 358..2019 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:34 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 1..1662 358..2019 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:19 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 1..1662 358..2019 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:41 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RB 1..1662 358..2019 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:52 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 44..2517 1..2474 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:50 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 44..2517 1..2474 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:34 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 48..2521 1..2474 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:19 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 44..2517 1..2474 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:41 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
meso18E-RA 48..2521 1..2474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:00 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
X 19706418..19707464 1428..2474 100 <- Minus
X 19707536..19707604 1359..1427 100 <- Minus
X 19708152..19709149 361..1358 100 <- Minus
X 19711945..19712267 38..360 100 <- Minus
X 19712962..19712998 1..37 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:00 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
X 19706418..19707464 1428..2474 100 <- Minus
X 19707536..19707604 1359..1427 100 <- Minus
X 19708152..19709149 361..1358 100 <- Minus
X 19711945..19712267 38..360 100 <- Minus
X 19712962..19712998 1..37 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:00 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
X 19706418..19707464 1428..2474 100 <- Minus
X 19707536..19707604 1359..1427 100 <- Minus
X 19708152..19709149 361..1358 100 <- Minus
X 19711945..19712267 38..360 100 <- Minus
X 19712962..19712998 1..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:34 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19600451..19601497 1428..2474 100 <- Minus
arm_X 19601569..19601637 1359..1427 100 <- Minus
arm_X 19602185..19603182 361..1358 100 <- Minus
arm_X 19605978..19606300 38..360 100 <- Minus
arm_X 19606995..19607031 1..37 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:58 Download gff for LD26007.complete
Subject Subject Range Query Range Percent Splice Strand
X 19714516..19715562 1428..2474 100 <- Minus
X 19715634..19715702 1359..1427 100 <- Minus
X 19716250..19717247 361..1358 100 <- Minus
X 19720043..19720365 38..360 100 <- Minus
X 19721060..19721096 1..37 100   Minus

LD26007.pep Sequence

Translation from 357 to 2018

> LD26007.pep
MDTKNPPPVTSSYHHQRAPRTPESYFNVPESVALLNIVKSERIQSAFQSN
RKNHASVWEMVAEVLNRFSARKRTAKQCCNRYENLKKIYTQLKKNPERHV
RRNWPYMFLFKEIEEQRGECWGSNGKRLALITKNHNELSYYQRRRQAAEL
GVLLNKDNLTPHQHSLLQSLSQSQSQSHSHAHSTDSSQSGSKLDRFLPNH
FVEAQLSEVAGPVGGSASGVSGMSAGGFDENPLQMQMVQAAAAAAAVAAH
KRHELQMASVGGVQMTPEDDDEDEPQRPAFKNHLHVLGHGHGLGLGHAPM
DDSGEAPDFEKDCNGALNMHHQNNNHNENHISMKSEPLSEGEFNPDDIQL
MQTNYNGAQNYYSPGMDANILHPDVIVDTDILSDCSSSTTLKKKRKMSTS
TDGDSTNYELIEYLKRREKRDEELLKRMDAREDRLMNLLERTVVAIETLA
VKRALTFPVNPTKENAPATARPLSPPPPEAQFAAPPATQEQPTSPERNGI
ATGRSGTIPVANQDAAIEVPDDGDSGDDVQVKDKLAKLTPKAGGDERTDG
RQT*

LD26007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20467-PA 554 GF20467-PA 1..554 1..553 1805 71 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18027-PA 548 GG18027-PA 1..548 1..553 2461 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12254-PA 549 GH12254-PA 7..450 2..447 1663 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-PD 553 CG14233-PD 1..553 1..553 2905 100 Plus
meso18E-PC 553 CG14233-PC 1..553 1..553 2905 100 Plus
meso18E-PB 553 CG14233-PB 1..553 1..553 2905 100 Plus
meso18E-PA 553 CG14233-PA 1..553 1..553 2905 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11014-PA 577 GI11014-PA 1..206 1..213 1018 89.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18303-PA 584 GL18303-PA 1..469 1..459 1709 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12846-PA 580 GA12846-PA 1..469 1..459 1712 78.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22710-PA 238 GM22710-PA 1..230 107..336 1205 97 Plus
Dsec\GM16184-PA 188 GM16184-PA 2..188 368..553 746 81.6 Plus
Dsec\GM22711-PA 103 GM22711-PA 1..103 428..553 437 73 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15613-PA 545 GJ15613-PA 5..463 2..453 1708 72.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15888-PA 610 GK15888-PA 43..517 2..474 1700 71.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17356-PA 550 GE17356-PA 1..550 1..553 2461 93.7 Plus

LD26007.hyp Sequence

Translation from 357 to 2018

> LD26007.hyp
MDTKNPPPVTSSYHHQRAPRTPESYFNVPESVALLNIVKSERIQSAFQSN
RKNHASVWEMVAEVLNRFSARKRTAKQCCNRYENLKKIYTQLKKNPERHV
RRNWPYMFLFKEIEEQRGECWGSNGKRLALITKNHNELSYYQRRRQAAEL
GVLLNKDNLTPHQHSLLQSLSQSQSQSHSHAHSTDSSQSGSKLDRFLPNH
FVEAQLSEVAGPVGGSASGVSGMSAGGFDENPLQMQMVQAAAAAAAVAAH
KRHELQMASVGGVQMTPEDDDEDEPQRPAFKNHLHVLGHGHGLGLGHAPM
DDSGEAPDFEKDCNGALNMHHQNNNHNENHISMKSEPLSEGEFNPDDIQL
MQTNYNGAQNYYSPGMDANILHPDVIVDTDILSDCSSSTTLKKKRKMSTS
TDGDSTNYELIEYLKRREKRDEELLKRMDAREDRLMNLLERTVVAIETLA
VKRALTFPVNPTKENAPATARPLSPPPPEAQFAAPPATQEQPTSPERNGI
ATGRSGTIPVANQDAAIEVPDDGDSGDDVQVKDKLAKLTPKAGGDERTDG
RQT*

LD26007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
meso18E-PD 553 CG14233-PD 1..553 1..553 2905 100 Plus
meso18E-PC 553 CG14233-PC 1..553 1..553 2905 100 Plus
meso18E-PB 553 CG14233-PB 1..553 1..553 2905 100 Plus
meso18E-PA 553 CG14233-PA 1..553 1..553 2905 100 Plus