LD26231.complete Sequence
4000 bp (4000 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060377
> LD26231.complete
CCGAGTGTGTGTTAGCTGTTGTCTCCAACTGTCGAATGGGCCTCAAAATG
GAGTGTCCTTTGCCCAGGCTCCGCTCCTTGGACTCCAGTATCAGCACGGA
ATGCTTCGCATTTTTGGTTATGGCCACAGGGAGCGTAAAATATGACCGGT
AATGAGAATGGGGTGTCCTGTCCGAAGGAGCAGAAGCGTTGAGAGTTCGC
ACGAAGCGAATCCTTCGACTTTGACTTCGACTTCGAGTGTCACGTTTGCA
ACAAATGGCGCATGGCACGCAAAGGGCTAATGTAATTCGTGTATTTTACT
TGATTTCATGTTACGTGCACAATCGGCCAAATTGCAAGGCATCGAACCAG
GGCTAAGTTGCCTTGAGTTGACTCCTCAGGCTGAGAGGCCCAAAAACCAA
AACCAAAACCAAAACCAAAACTGTAACGCCGACGGGGTACTTTCATTTTT
GGGTTGACACTACGGCCATGGCCAAGGATTGCAATTGGAAAGTGGCACCA
AATTGGGGGAAATGCATGTGGCAACCAGCCGGAGTTCCCGATTCTACAAC
TGGGATTTCAGGTTGGTACGATGGCAGGATGGCAGGATGGCAGGATTGCA
CGATGGCAAGATGGCAGGATAGCAGGAGCACCGCGACGCATTTATTAGCA
TTTTTATGTGTACACTTTTTCGAGCACTTTTTGAACATTTCTGATTCGGC
GAGGCGAGGGTTTTTAATTAAGTTTGAGAATAGAGAGGTGAGTGGGATGA
GTTTGAAACTCTCCAGTTGAGATTGGGATTGGGCTTTGGGGAGTAAGTCA
GGGTAGTCAGTCGGTAGATGGCAAAAACTTGTATAATTTTACTCGGCTCA
CTCTTTGTGGCCGCCTGTCTATAGTTGCCACTTTTGCTGCTGCTACTCGT
TGTTGGCAAAAGTTGCATTCAAAATTGCAATTTTATATGCACAACGCTCA
CCAGCAACTTTGGAAACAATTTGTGACAGCCTTGAGGGATAATCGAGTGG
CCCAGATTGAGGATGAAATCAATTTGATTGTCAAAGATGGTGCTGCCCAC
TTGATTAAGTAAATGCCTCGCCCGGTTGATTATCAATTTGTGAAAAAAAG
AAAAGACAAAAAAAAAATTAATAACAAAGCATGATTTTTCCACTTGAAAT
TCATTTACTGTGCCATTCCATTATTTGGTAATTGAATAATCTGCTTTCTA
TCATAAATTATAATCCGTAGCATTGATTGCAGCGATAGAATTTCATTAAT
AAGAATGACATGTATTGAAATTTGTTTATTATTTCTAATTCGTTAAAGGA
ACTTTGCCCTAGAGAATTCCTCTCAATCAGTGTCAAAATTTGTTTGATTC
AGGTGAAATAAGTATCCCATTTCAATGAGTCAATTTAATCAAGCTGTAGA
AACGGAATTTTGTTTGACGGCGGAAACAACTATGCTCCAATTAACACATG
TTTGCCGAAAGAAAAAAATTGCCAAAACTCAAGAAAACACAGCAATGTGG
AAAGAACACGAGCATAATTGTTTTTTATACATTTTATGTTCGCTTGGCTA
AAAATTAATTTTATTTTGATGGCGTGAATTGGGATGTATGTGGTGTGGGG
CGTTGAAGGTGCTGGCACTCAGGAATTTCAAAATTAAGCAATCCGAGTAA
CCAGCCCCTCAGCCCCTCAGCTCCTCAGCCTTTTCGTCTCTAATTGTTTT
TTAAATACGTCTCTCAAATGCTCTCTATTTCAAGACGAGAAATGAACAAA
GAGCAGCGCCAGCAAACAACAACGAACAACAAATGCAAAGCACAACTTCT
ACGACAGCCGCCGAATCATTGAAAGAGCCGCGTCTTTGCTTTTGCTTCTG
CTTCAGTTTCTTGCTTTTGCTATGCTTGCGCCATGCTTTTTTCGCCATGC
TTTTTTTGCCGCTTGCCTCGAAAATGGGGCGTGACAGAAATGAGCACATA
AGTGTCATAATCACACACACACATAGCTACACATAGCTACACATGCATTT
GCTTACTTGAGCTAGAGATTTACCTTCAAGTGAGCAGCTCAGCTTTTTAA
CACTTTTACTTTCAGCAATACTCAGCAGCGGTGGGTGGTATGATTTGACT
AGAGAAGCGCCAACTCATTTAATTTGATGCCCCAATCCAACCAGCCATGC
CACTTCCCCACTGAAAGCCCATCTTCCACCCAGCAGCACCTTCTTCTCGC
GAAGCCGTTGCCTAATTGTCGTCTATCTCTAGTCGACAGTCGTGGCCCAT
AACCTCCCACCTGCCACCCACTTGCCATCACCCACTTGCCACCACCCACT
TGCCACCACCCACTGCTGTTTGCTGTCTCAGCGCAAAATGTTGCTGCTCT
AATTAGAATGAAACAATTTTCATTTCATTCTACATTTTCATGTTGTCGTC
GTTGGCATTGCCTTACTGCTTGCTACACGGATAAAAAGCAGCTCTCGGCG
TTAATTTCGTATTTATAGGTCAAATTGAGATTTGCATTGTTTGTATCTGT
TTTAATCAGTAATTAATAAGAATCAAAGAAATATGGCTCAGTTCTCAAGC
TGGCAAAATTGCATCCGAAACAAATGATGCCATAAAGCATTTTGACGTAC
TCGTACTAATACTTAAATGTATTTTGTGGTGGCTTTGTTTTAGATGCTTT
ATAAGTGCAAATAATAATAATAATGCCACAGAAATCACTTTGTTTTCGAT
ATCAATTATTTAAGTGTCGAAAAGTGTGCAAAATTGAGAGAGTATTCTTA
AGTATTCATTTCTAAGAGCGATATATTTTGTCACTGCATACTTTTTGACA
CTTGTTTTGCAAATAAACGATGAAAATGGTCACAAAAGCCCAAGTGTCTA
AAAGTATGCAGCAAATAATGTGTTATTTAAGGAATGTACTTCTAAAAACG
ACGGTTTCTTTATTTGTACAGCATACTTTTTGTCACTTGTTTTCCAAAAT
TATGCGCAAGATCAAGAAAAAAAACCACAATAGCATATGGAATATTTTTT
CCAGTGCACTTGTCGCTTGCTTGGCCCAAAATAAATAATTTACGCCAGTG
TTGCTACTTTCGCTGAGCCAAGCGAATCTCATAGAAATTATGCCATGCCA
AAGAGTAGGACGTTCCTTCCTTCCATTTTAATTTCAATCTACTCGCTGGC
AACTACGTACATATATACATACATGCGTGTGTATATATGTATATATATTA
ATATATATACATCTCTCTATCCGTATCCACAATAATGTATGGCAAAGATG
CGGTATCCTGATGTAATTCCCGCCTCCTCGCCGTCTGAACTGCATCATAT
TGCAGCGGCAACAACCGCATAAAGACATTAAGCGCATTTAATTTGAAGTG
GCAGGATGAATGGAAATTTGCAACGAGGCAAAATGAACACCCACCCACCA
ACCAACCGAGCAATATGACCTGCATTATATGTATGTATGCTCATCGCAGA
TAGGCAAATGGGCGTGGAGCTGGCGAACGGAACGGTGTCTGGGATCAGTG
CCACCAAGTCCGGAGCGGATCCATCCAGTCAATCTCTCCCCTCTCCCCTC
TCCCTCTACCTACCCCAAATCTCATATTGTGGCGGCTTCTGTCCTGGGTG
ACTCAAAGCGGTTAGTCGAAAGCAACTACCAGCTGTTGACAGTTTTCGAT
TGGAGCGCAGTTGGTGGGTGCGATGAGTTGCTGTAGACGATTGTGATGGT
GATGGGTGCGAATGGCTGATGGTGATGGTGTATATGATAATGATGATGAT
GATGATGATGATGATGAGGCTGCCTGATAATATCATTTATGCTAAATGTG
CGGGATTTGTTGGCTGAGTTAAGGATTATGAGTGGCGCAGGCAGATGGAA
ATGGAAATTAGATGCTTTCACGAGCCACACTCAACGCAATTTTATGGACC
TTTTTCGGTATGGCTAAAGAGCTTATGGGCCAAATCTAACTGAAGGGTTA
TCCGCTGCTGGCTAAAACCCAATTTAATGACAAAAAAAAAAAAAAAAAAA
LD26231.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 20:32:11 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chrX | 22417052 | chrX | 19301391..19305366 | 1..3981 | 19735 | 99.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19412585..19416584 | 1..4000 | 20000 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23527363 | X | 19420683..19424682 | 1..4000 | 20000 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 16:36:16 has no hits.
LD26231.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:31 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrX | 19305153..19305366 | 3768..3981 | 100 | | Plus |
| chrX | 19302018..19304548 | 628..3157 | 98 | == | Plus |
| chrX | 19304604..19305107 | 3213..3716 | 100 | == | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:07 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-RA | 1767..1791 | 842..867 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:53:07 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:31 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19412585..19416565 | 1..3981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:31 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19412585..19416565 | 1..3981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:31 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19412585..19416565 | 1..3981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:28 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19306618..19310598 | 1..3981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:28 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19306618..19310598 | 1..3981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:28 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19306618..19310598 | 1..3981 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:20 Download gff for
LD26231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19420683..19424663 | 1..3981 | 100 | | Plus |
LD26231.pep Sequence
Translation from 467 to 769
> LD26231.pep
MAKDCNWKVAPNWGKCMWQPAGVPDSTTGISGWYDGRMAGWQDCTMARWQ
DSRSTATHLLAFLCVHFFEHFLNISDSARRGFLIKFENREVSGMSLKLSS
*
LD26231.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM19517-PA | 48 | GM19517-PA | 1..45 | 1..53 | 167 | 63.2 | Plus |
LD26231.hyp Sequence
Translation from 467 to 769
> LD26231.hyp
MAKDCNWKVAPNWGKCMWQPAGVPDSTTGISGWYDGRMAGWQDCTMARWQ
DSRSTATHLLAFLCVHFFEHFLNISDSARRGFLIKFENREVSGMSLKLSS
*
Sequence LD26231.hyp has no blast hits.
