Clone LD26240 Report

Search the DGRC for LD26240

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:262
Well:40
Vector:pOT2
Associated Gene/TranscriptCG1868-RA
Protein status:LD26240.pep: wuzgold
Preliminary Size:2312
Sequenced Size:2324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1868 2001-07-04 Blastp of sequenced clone
CG1868 2003-01-01 Sim4 clustering to Release 3
CG1868 2008-04-29 Release 5.5 accounting
CG1868 2008-08-15 Release 5.9 accounting
CG1868 2008-12-18 5.12 accounting

Clone Sequence Records

LD26240.complete Sequence

2324 bp (2324 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051734

> LD26240.complete
AACGTTTGGCAAGAACTTTCTCCCAGCAGAACGAACTGATAACCCTGAAT
GAGAACTACAAGGATGAGTTCGAAACCTTCAAGTCATTGGCATCCATGCC
AGCGGACATTCTGCAGATATTCCAGAAGCTGGCGCTCGACTTGCTGCAGG
ATTTGGAGCAACCGGTTGACAGGAAAGGATGCGCAGAACGTTCGAAAAAT
CTGCGCGAGGAGGGAAACCTTATGTTCAAAGAGTCCGCATCGGGATCCTC
CAAGGACTCGGTTCTGAAAGCATGCAGGCTTTACTCGGAAGCCGTTTTCG
AGGCTGAGAATGCTGTGGAAGAGCTGTCGCTGGCGTTTGCCAACCGAGGA
ATAGCTTTGCAGGAGTACGGGTACTACAGAGAAGCCTATGACGACTGCTC
CAATGCGCTGGAGTGCGGATACCCGGAAAGGCTGCGGCACAAGGTGATCA
TGCGGCAGGCCTTCTGCGCCTGGAAGCTGAAGAAGATTGCTTCGCTAGAG
GAGCATTTGGATTATCTCGGGCAGCTGCAGCTTAAAGAGAGCTTTGAGCA
GCAGCTGGAAGACCTGAAGCAGAAACTGGAGCTGCTAAAGAACCAACCCA
GAGAGCAGGAAACACAAGGGAAAGTGGTGGATAAATCTCTAGGGGAAATC
CTTACAGATCCTGGTCCCCGTGGTCGATATATGGTGGCTAAGGAAGCGAT
TAGCAAAGGCAACGTAATCTTTTCAGAGCGCGCCTCCTGCTTTGTTCCAT
TGGAGCAACTGCTTATTTGCCAGCAGTGCGCCGCCACCTTAATGAGCGCA
CCCATACCCTGCCCCAATTGCCATCAGCGGGTAGTCTACTGCTCTAGGAA
GTGTCGGGAGGCGCACTCGGCCATCCACAAATTCGAGTGTGCCGCCTACA
GAAAGGATATCCTCCGACTTTTGGGCATTTCGCATTTGGCCTTGCGATTG
CTTTTGACTTACATTCCCTACATAAGGCCTCATTTGCAAGAGATGACCAG
TGCAAAGGGTATGTGGGAAGAAATAATGAATCTGTCCCGAAAACCGGAAG
AGAGTGAAAACGCTCCAGAGTATTTGCGAAGCCTGCGCATGGTCAGTCAA
CTGGATCAGGCTATCGATGAGGAGTTAAATTACCACATCCTCTGTGCCAA
TCTCCTTCAACTTTACCTGAAAGAGCACACCGATTTCTACGATCAGTTCC
ACTCATTGCCAGCCAGCATTGAAGATTGGCAACTGATTATATCAGCACTG
ATTCTGCGCTTCGCCGGCCAGTTGCTGGCGAATGGGCATGTAGGCGATGC
GTTGCTCGGAGTTGGCATGGAGCCAAAAGAGTTTGTCATGCTGCAGCCGG
AGTTGTGGCAAAAGCCTCGACACCTGAAACGCGGCCAGCTGCACAATCTA
TCCCACTCGGATCCTATCACGGCTATCAATCTGCCCTACTTGAGCTTGTG
CAACCACGCCTGCGAACCCTCAATTCGCACCAAGTTCGATGGATGTTCCG
TGGTGAACTACGCTGCAAAGGACATTCTAGAAGGCGAAGAGATCTTCAAT
TGCTATACAATGGATTACAGAAACAGTTTAAAGCTACAACGATCTCATCC
GCTCAAGGCCATCTACAAATTTGAGTGCACATGCGCTAAGTGCACACGAA
CTGATCCCGACCAGAACTATCTTTCTTTTCATCGTTATCGCTGCGAAAAG
CCCAACTGCCGACAAGAATTTCTGCCAGACGCCAAAGTTCAGCAGAATAA
TCTTCGCTGGTGGCTGAGATGCAATGCAGAGAAACCGATTACTTGCACGG
TGTGCCACGAGCTTCAACATTTCGCCTGGTACAATGAGTTCCTTGGACTC
ATCGGCAGCAGTGCCGATTCGTCAAAAAGGCAGGCGCTGTTCAAGGCATT
CGATGATCTAGACAAGTGGCTTGTGGATCACCACAGCTTAAAAAGAATTA
TGGCCGAGGAACTGGTAACAGCCTGTTTTTATGAGATAGATGGAGGCACT
TCATTGGATGAGTTTGAGTATGAAGATCTGGCGAGGATTATCCGCAAACA
GCTGGAAGGCATTGCTGCGCAGTGTGGCGATAACTCAACGGAATACATTG
CTCGCATGACCTATTTGTGGGATATCATAGCCCAGAAGAAATGCCGCACC
GATAGAAAGGAACTGCTAGAGATGAAAGGTAAGGTGGATTATCTGGCTAG
CGAGCATCGCGAGGTTTTCTTGAACTATTACAACGATTTTATTGAGCAAT
AATGTAAATAACGATATACACGCATTAAATTCGCTAGTTTCGAGCTACAA
GCATTAAAAAAAAAAAAAAAAAAA

LD26240.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1868-RB 2404 CG1868-RB 95..2402 1..2308 11540 100 Plus
CG1868-RA 2373 CG1868-RA 64..2371 1..2308 11540 100 Plus
CG1814-RB 1969 CG1814-RB 1854..1969 2308..2193 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5470000..5471020 1670..650 5105 100 Minus
chr2R 21145070 chr2R 5471076..5471724 649..1 3170 99.2 Minus
chr2R 21145070 chr2R 5469623..5469945 1993..1671 1615 100 Minus
chr2R 21145070 chr2R 5469256..5469569 2305..1992 1570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9582505..9583525 1670..650 5105 100 Minus
2R 25286936 2R 9583581..9584229 649..1 3245 100 Minus
2R 25286936 2R 9582128..9582450 1993..1671 1615 100 Minus
2R 25286936 2R 9581758..9582074 2308..1992 1585 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9583704..9584724 1670..650 5105 100 Minus
2R 25260384 2R 9584780..9585428 649..1 3245 100 Minus
2R 25260384 2R 9583327..9583649 1993..1671 1615 100 Minus
2R 25260384 2R 9582957..9583273 2308..1992 1585 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:33:23 has no hits.

LD26240.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:34:11 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5469256..5469568 1993..2305 100 <- Minus
chr2R 5469624..5469945 1671..1992 100 <- Minus
chr2R 5470000..5471020 650..1670 100 <- Minus
chr2R 5471076..5471724 1..649 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:17 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 5..2256 1..2252 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:09 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 5..2256 1..2252 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:11:46 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 5..2256 1..2252 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:10 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 5..2256 1..2252 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:07 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 5..2256 1..2252 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:50 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RA 1..2305 1..2305 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:09 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RA 1..2305 1..2305 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:11:46 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 95..2399 1..2305 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:10 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RA 1..2305 1..2305 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:07 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
CG1868-RB 95..2399 1..2305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:11 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9581761..9582073 1993..2305 100 <- Minus
2R 9582129..9582450 1671..1992 100 <- Minus
2R 9582505..9583525 650..1670 100 <- Minus
2R 9583581..9584229 1..649 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:11 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9581761..9582073 1993..2305 100 <- Minus
2R 9582129..9582450 1671..1992 100 <- Minus
2R 9582505..9583525 650..1670 100 <- Minus
2R 9583581..9584229 1..649 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:11 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9581761..9582073 1993..2305 100 <- Minus
2R 9582129..9582450 1671..1992 100 <- Minus
2R 9582505..9583525 650..1670 100 <- Minus
2R 9583581..9584229 1..649 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:11:46 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5469266..5469578 1993..2305 100 <- Minus
arm_2R 5469634..5469955 1671..1992 100 <- Minus
arm_2R 5470010..5471030 650..1670 100 <- Minus
arm_2R 5471086..5471734 1..649 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:22 Download gff for LD26240.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9582960..9583272 1993..2305 100 <- Minus
2R 9583328..9583649 1671..1992 100 <- Minus
2R 9583704..9584724 650..1670 100 <- Minus
2R 9584780..9585428 1..649 100   Minus

LD26240.hyp Sequence

Translation from 2 to 2251

> LD26240.hyp
RLARTFSQQNELITLNENYKDEFETFKSLASMPADILQIFQKLALDLLQD
LEQPVDRKGCAERSKNLREEGNLMFKESASGSSKDSVLKACRLYSEAVFE
AENAVEELSLAFANRGIALQEYGYYREAYDDCSNALECGYPERLRHKVIM
RQAFCAWKLKKIASLEEHLDYLGQLQLKESFEQQLEDLKQKLELLKNQPR
EQETQGKVVDKSLGEILTDPGPRGRYMVAKEAISKGNVIFSERASCFVPL
EQLLICQQCAATLMSAPIPCPNCHQRVVYCSRKCREAHSAIHKFECAAYR
KDILRLLGISHLALRLLLTYIPYIRPHLQEMTSAKGMWEEIMNLSRKPEE
SENAPEYLRSLRMVSQLDQAIDEELNYHILCANLLQLYLKEHTDFYDQFH
SLPASIEDWQLIISALILRFAGQLLANGHVGDALLGVGMEPKEFVMLQPE
LWQKPRHLKRGQLHNLSHSDPITAINLPYLSLCNHACEPSIRTKFDGCSV
VNYAAKDILEGEEIFNCYTMDYRNSLKLQRSHPLKAIYKFECTCAKCTRT
DPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQNNLRWWLRCNAEKPITCTV
CHELQHFAWYNEFLGLIGSSADSSKRQALFKAFDDLDKWLVDHHSLKRIM
AEELVTACFYEIDGGTSLDEFEYEDLARIIRKQLEGIAAQCGDNSTEYIA
RMTYLWDIIAQKKCRTDRKELLEMKGKVDYLASEHREVFLNYYNDFIEQ*

LD26240.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1868-PC 751 CG1868-PC 3..751 1..749 3962 100 Plus
CG1868-PB 751 CG1868-PB 3..751 1..749 3962 100 Plus
dao-PB 882 CG15267-PB 142..865 40..747 868 31.3 Plus
dao-PA 882 CG15267-PA 142..865 40..747 868 31.3 Plus
dao-PC 808 CG15267-PC 142..775 40..658 699 31 Plus

LD26240.pep Sequence

Translation from 95 to 2251

> LD26240.pep
MPADILQIFQKLALDLLQDLEQPVDRKGCAERSKNLREEGNLMFKESASG
SSKDSVLKACRLYSEAVFEAENAVEELSLAFANRGIALQEYGYYREAYDD
CSNALECGYPERLRHKVIMRQAFCAWKLKKIASLEEHLDYLGQLQLKESF
EQQLEDLKQKLELLKNQPREQETQGKVVDKSLGEILTDPGPRGRYMVAKE
AISKGNVIFSERASCFVPLEQLLICQQCAATLMSAPIPCPNCHQRVVYCS
RKCREAHSAIHKFECAAYRKDILRLLGISHLALRLLLTYIPYIRPHLQEM
TSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHILC
ANLLQLYLKEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVG
DALLGVGMEPKEFVMLQPELWQKPRHLKRGQLHNLSHSDPITAINLPYLS
LCNHACEPSIRTKFDGCSVVNYAAKDILEGEEIFNCYTMDYRNSLKLQRS
HPLKAIYKFECTCAKCTRTDPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQ
NNLRWWLRCNAEKPITCTVCHELQHFAWYNEFLGLIGSSADSSKRQALFK
AFDDLDKWLVDHHSLKRIMAEELVTACFYEIDGGTSLDEFEYEDLARIIR
KQLEGIAAQCGDNSTEYIARMTYLWDIIAQKKCRTDRKELLEMKGKVDYL
ASEHREVFLNYYNDFIEQ*

LD26240.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12496-PA 751 GF12496-PA 34..748 1..718 2489 64.4 Plus
Dana\GF14344-PA 887 GF14344-PA 147..870 9..716 855 31.4 Plus
Dana\GF12554-PA 660 GF12554-PA 77..560 44..537 284 26.2 Plus
Dana\GF12292-PA 574 GF12292-PA 64..491 29..516 235 23.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25277-PA 750 GG25277-PA 34..747 1..718 3181 82.5 Plus
Dere\GG25152-PA 881 GG25152-PA 141..864 9..716 821 30.6 Plus
Dere\GG20202-PA 660 GG20202-PA 77..560 44..537 263 25.7 Plus
Dere\GG20247-PA 573 GG20247-PA 64..491 29..516 224 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21957-PA 758 GH21957-PA 34..753 1..718 2013 52.5 Plus
Dgri\GH21386-PA 664 GH21386-PA 74..564 33..537 239 24.8 Plus
Dgri\GH20862-PA 574 GH20862-PA 64..491 29..516 231 23.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd4-1-PC 751 CG1868-PC 34..751 1..718 3808 100 Plus
Smyd4-1-PB 751 CG1868-PB 34..751 1..718 3808 100 Plus
dao-PB 882 CG15267-PB 142..865 9..716 868 31.3 Plus
dao-PA 882 CG15267-PA 142..865 9..716 868 31.3 Plus
dao-PC 808 CG15267-PC 142..775 9..627 699 31 Plus
Smyd4-3-PA 660 CG7759-PA 78..560 45..537 264 26.5 Plus
Smyd4-4-PA 573 CG8378-PA 64..496 29..521 227 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19663-PA 762 GI19663-PA 34..750 1..718 1585 44 Plus
Dmoj\GI20970-PA 574 GI20970-PA 64..491 29..516 241 23.3 Plus
Dmoj\GI18563-PA 666 GI18563-PA 77..566 44..537 210 24.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20110-PA 760 GL20110-PA 34..759 1..718 2339 59.8 Plus
Dper\GL26038-PA 890 GL26038-PA 150..873 9..716 808 30.9 Plus
Dper\GL11690-PA 660 GL11690-PA 77..560 44..537 236 24.2 Plus
Dper\GL16991-PA 574 GL16991-PA 64..491 29..516 224 23.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24934-PA 760 GA24934-PA 34..759 1..718 2341 59.9 Plus
Dpse\GA13614-PA 890 GA13614-PA 150..873 9..716 808 30.9 Plus
Dpse\GA20567-PA 660 GA20567-PA 77..560 44..537 235 24.4 Plus
Dpse\GA20567-PB 567 GA20567-PB 3..467 62..537 225 24.1 Plus
Dpse\GA21031-PA 574 GA21031-PA 64..491 29..516 224 23.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20595-PA 751 GM20595-PA 34..751 1..718 3604 92.6 Plus
Dsec\GM15982-PA 882 GM15982-PA 142..865 9..716 849 31.4 Plus
Dsec\GM21288-PA 660 GM21288-PA 77..560 44..537 259 26.1 Plus
Dsec\GM21333-PA 573 GM21333-PA 64..496 29..521 223 23.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10068-PA 751 GD10068-PA 34..751 1..718 3654 93.5 Plus
Dsim\GD23999-PA 882 GD23999-PA 142..865 9..716 845 31.3 Plus
Dsim\GD10796-PA 646 GD10796-PA 77..560 44..537 261 25.6 Plus
Dsim\GD10841-PA 694 GD10841-PA 64..477 29..505 179 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15028-PA 723 GJ15028-PA 1..719 1..717 1685 47 Plus
Dvir\GJ20689-PA 574 GJ20689-PA 64..491 29..516 237 23.5 Plus
Dvir\GJ20356-PA 662 GJ20356-PA 77..562 44..537 230 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21490-PA 745 GK21490-PA 38..740 7..718 1719 48 Plus
Dwil\GK18318-PA 881 GK18318-PA 140..864 9..716 852 30.4 Plus
Dwil\GK21416-PA 661 GK21416-PA 77..561 44..537 233 25.1 Plus
Dwil\GK19653-PA 574 GK19653-PA 66..491 31..516 204 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22225-PA 753 GE22225-PA 34..750 1..718 3095 81.8 Plus
Dyak\GE20902-PA 886 GE20902-PA 146..869 9..716 845 31.1 Plus
Dyak\GE12361-PA 660 GE12361-PA 77..560 44..537 260 25.9 Plus
Dyak\GE12406-PA 573 GE12406-PA 64..491 29..516 224 22.6 Plus