Clone LD26258 Report

Search the DGRC for LD26258

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:262
Well:58
Vector:pOT2
Associated Gene/Transcriptspz5-RA
Protein status:LD26258.pep: gold
Preliminary Size:2100
Sequenced Size:2005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9972 2001-01-01 Release 2 assignment
CG9972 2001-07-04 Blastp of sequenced clone
CG9972 2003-01-01 Sim4 clustering to Release 3
CG9972 2008-04-29 Release 5.5 accounting
CG9972 2008-08-15 Release 5.9 accounting
CG9972 2008-12-18 5.12 accounting

Clone Sequence Records

LD26258.complete Sequence

2005 bp (2005 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051735

> LD26258.complete
CCGCCGTGAGCATTGGCAAACGCGTGAAACGGAAAAGACGAAAACGAAAT
CGAAATCGAAAACCTAAAGTCCAAAAACCGAAATATCCGCGCTCTTCGGT
ACGTGTTAAGTTTTTTAATTAGTAGAATTTTCAAGTGAGTGTTCGGTGGC
AAAAAAAGAGAAAATATTTCACTGAAATACAAAGAGCATAGCTAAGCTCG
ACAAAAGTGCACATAGTGATCAAAAACATTTGCCAAATACTGTGAAGCAA
AAACCCAAACAAATCTACAAGCCGCACACTAGGTTTCCGAATTCACGTTG
AAGACACTGGCTGAATCGCAATCGAGTCAAATGCAAATGCAAATCGACGG
CGAATGAATTGACAATGACAAAAAGTATTAAACGTCCGCCCCCCTTTAGT
TGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCCGC
CCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCAGT
TCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAAAG
ACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGCCT
CGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAACCT
GGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACGAT
CCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAATGG
ATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGGGG
GTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGTAT
CTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTATAA
CTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAATC
AGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCTTG
GTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCGGA
GGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGACA
ACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACATG
GATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAGCG
TTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGACGA
CATCGCAGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACTGG
ATGTTTGTGGTCAACGAGCAGAACACCGCTCGCCAAATGGTCAAGGCGGA
GCTTTGCGCCTCGAACACCTGCTCGAACCTGTGCGAATTGCCCAACGGCT
ACAACTCGAGATGCGAGCAGAAGTTTGTGCAAAAACGCTTAATTGCGCTC
CAGGGCAACGGGCAGAATCTGTACACGGACACGTTCTGGTTTCCCAGTTG
CTGTGTCTGCACGATAGCCGCCAATTAAATGTGTCCAGCGGACGAAGGAC
GAAGGACGAGACCATACTCTCAGCGGCGATTTTGGCAAATTCATATCTGA
TAACTATAAATGATACGAAAACACACACAACACCCACACATGAAACACTC
AATATCTCTCATGTTGTTACACAAACACACAATGTAGTTCTTAAAAATGT
AATTTAAAATCAAAAACATCGAGTGAGGCATGCAAAATTGGATTTATGCC
CACACAATCCCTTTGAGTTTGCATAGTAGCATTAGTCTTACCCTGTGAGC
GATCTAATGGATATCAAATAAACAAATATTCCACGCGATGCTTTTTCAAG
TTAAACGAGAGGCACTATTTTATTTGGTCTAAATAAGTTTAAATAAATAT
GTATAAATTCACCATTAAGCTCATAAGCTCATAAATCTCCATAAATCTGC
AATAATTAAAAAGAATTCATTAAAGTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAA

LD26258.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 2072 spz5-RA 92..2072 1..1981 9905 100 Plus
spz5.a 1859 spz5.a 160..1859 282..1981 8500 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2883061..2883677 1978..1360 2940 98.7 Minus
chr3L 24539361 chr3L 2885319..2885831 1359..847 2520 99.4 Minus
chr3L 24539361 chr3L 2891278..2891562 284..1 1345 98.9 Minus
chr3L 24539361 chr3L 2886118..2886383 848..583 1315 99.6 Minus
chr3L 24539361 chr3L 2888301..2888458 584..427 775 99.4 Minus
chr3L 24539361 chr3L 2888514..2888660 427..281 735 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2883638..2884259 1981..1360 3110 100 Minus
3L 28110227 3L 2885896..2886408 1359..847 2565 100 Minus
3L 28110227 3L 2891865..2892148 284..1 1420 100 Minus
3L 28110227 3L 2886686..2886952 849..583 1335 100 Minus
3L 28110227 3L 2888888..2889045 584..427 790 100 Minus
3L 28110227 3L 2889101..2889247 427..281 735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2883638..2884259 1981..1360 3110 100 Minus
3L 28103327 3L 2885896..2886408 1359..847 2565 100 Minus
3L 28103327 3L 2891865..2892148 284..1 1420 100 Minus
3L 28103327 3L 2886686..2886952 849..583 1335 100 Minus
3L 28103327 3L 2888888..2889045 584..427 790 100 Minus
3L 28103327 3L 2889101..2889247 427..281 735 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:29:49 has no hits.

LD26258.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:30 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2883061..2883677 1360..1978 98 <- Minus
chr3L 2885319..2885831 847..1359 99 <- Minus
chr3L 2886120..2886383 583..846 99 <- Minus
chr3L 2888303..2888457 428..582 99 <- Minus
chr3L 2888514..2888658 283..427 100 <- Minus
chr3L 2891280..2891562 1..282 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:19 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 1..1164 365..1528 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:10 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 1..1164 365..1528 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:26:02 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 1..1164 365..1528 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:53:13 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 1..1164 365..1528 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:54 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 1..1164 365..1528 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:51 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 17..1994 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:10 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 17..1994 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:26:02 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 19..1996 1..1978 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:53:13 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 17..1994 1..1978 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:54 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 19..1996 1..1978 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:30 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2883641..2884259 1360..1978 100 <- Minus
3L 2885896..2886408 847..1359 100 <- Minus
3L 2886689..2886952 583..846 100 <- Minus
3L 2888890..2889044 428..582 100 <- Minus
3L 2889101..2889245 283..427 100 <- Minus
3L 2891867..2892148 1..282 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:30 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2883641..2884259 1360..1978 100 <- Minus
3L 2885896..2886408 847..1359 100 <- Minus
3L 2886689..2886952 583..846 100 <- Minus
3L 2888890..2889044 428..582 100 <- Minus
3L 2889101..2889245 283..427 100 <- Minus
3L 2891867..2892148 1..282 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:30 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2883641..2884259 1360..1978 100 <- Minus
3L 2885896..2886408 847..1359 100 <- Minus
3L 2886689..2886952 583..846 100 <- Minus
3L 2888890..2889044 428..582 100 <- Minus
3L 2889101..2889245 283..427 100 <- Minus
3L 2891867..2892148 1..282 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:26:02 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2883641..2884259 1360..1978 100 <- Minus
arm_3L 2885896..2886408 847..1359 100 <- Minus
arm_3L 2886689..2886952 583..846 100 <- Minus
arm_3L 2888890..2889044 428..582 100 <- Minus
arm_3L 2889101..2889245 283..427 100 <- Minus
arm_3L 2891867..2892148 1..282 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:23 Download gff for LD26258.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2891867..2892148 1..282 100   Minus
3L 2883641..2884259 1360..1978 100 <- Minus
3L 2885896..2886408 847..1359 100 <- Minus
3L 2886689..2886952 583..846 100 <- Minus
3L 2888890..2889044 428..582 100 <- Minus
3L 2889101..2889245 283..427 100 <- Minus

LD26258.pep Sequence

Translation from 364 to 1527

> LD26258.pep
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAAN*

LD26258.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10234-PA 390 GF10234-PA 1..390 1..387 1619 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14494-PA 387 GG14494-PA 1..387 1..387 1880 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14578-PA 391 GH14578-PA 1..391 1..387 1389 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-PA 387 CG9972-PA 1..387 1..387 2110 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13903-PA 410 GI13903-PA 1..410 1..387 1371 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22428-PA 117 GL22428-PA 1..117 262..387 522 82.5 Plus
Dper\GL22427-PA 187 GL22427-PA 4..151 74..219 488 67.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22158-PA 395 GA22158-PA 1..395 1..387 1589 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14097-PA 387 GM14097-PA 1..387 1..387 2030 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13369-PA 387 GD13369-PA 1..387 1..387 2022 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11759-PA 398 GJ11759-PA 1..398 1..387 1382 70 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17627-PA 399 GK17627-PA 1..399 1..387 1489 73.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21683-PA 388 GE21683-PA 1..388 1..387 1895 93.6 Plus

LD26258.hyp Sequence

Translation from 364 to 1527

> LD26258.hyp
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAAN*

LD26258.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-PA 387 CG9972-PA 1..387 1..387 2110 100 Plus