Clone LD26292 Report

Search the DGRC for LD26292

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:262
Well:92
Vector:pOT2
Associated Gene/TranscriptAtg4a-RA
Protein status:LD26292.pep: gold
Preliminary Size:2029
Sequenced Size:2076

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4428 2001-01-01 Release 2 assignment
CG4428 2001-09-19 Blastp of sequenced clone
CG4428 2003-01-01 Sim4 clustering to Release 3
Atg4 2008-04-29 Release 5.5 accounting
Atg4 2008-08-15 Release 5.9 accounting
Atg4 2008-12-18 5.12 accounting

Clone Sequence Records

LD26292.complete Sequence

2076 bp (2076 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058573

> LD26292.complete
TCATACTAACAGCTACGTCACTGCGTTGTAATCAACAAAAAAGAAAAATA
AATCAAACTAAACCAGCCGCAGACTGATCAAATGCTGGTTATCGCATAGT
TTGTAATCAGCGCCCGTCACTGCCAACAACAAATGAAACCCCTGTGACCT
CGGGCCAGAAGCAGGAGCATTGCCGTTGCTGCCAGCGAAAACACAGGCCA
AAACAAAGGCCCACCCGAAAAACAGAACGTCATTCGAAGGCAATTATCGT
ATAGACGAGCAGCGGAGGCCCTGGTGTCCACCCCCTTCTCCTTCTGCCAG
CGCACCGGGCAGTAGATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGAT
CATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCTA
GTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCGA
AGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGGA
GCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATATC
GCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGGC
TGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGAT
CGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGATG
CCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTTC
TACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGGT
CGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTAG
TGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAGC
ACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGTG
GAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATTA
ACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAGT
TGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCTA
TGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACGG
GCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGACC
TACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCTC
GCTGGCGGTTTGTTTCCTCTGCAAGACCAGTGATAGTTTCGAGTCCCTGT
TAACCAAGTTGAAGGAGGAGGTGCTCAGCCTCTGCTCGCCTGCGCTCTTC
GAGATCAGTCAAACCCGCGCGGTCGATTGGGACACCACGGAGGACATCGA
CTGGCCCACCATGCCGGACATCGATTGGCCTGCGGGCACCTCGGATTCGG
ACTCTTTTGCCATAGTTGAAGAGAGCGGCAGGGACAGCGACGCCGGCTGT
AGCGGCGCCATTGGCAGCGGCAAAAAGCCCAGTGAGAGAGCCGTCATTTG
AGAGGTCGCCGGCGGAGCGCCTGCGCCTGCGCCGCACCAGAGCAGATGAA
GCCCAGCCAGGCGAAAGTGGAGCACCCAATGAGGAGAAAGAGAGTGGGCC
GGGAGGTCGAGCCCCTGCGGATGCTGCGAATGCAATAAACTAAGGCTAAA
GTGCATAATTAGACGAGTGGTTGAGATTTAGATTTTAGTATGTTTACGAT
TTGTACGAATGCGGTTCTTAGCGATTCATAATGCTGCTTTATTGTACGCG
ATTGACTCCACGGGAGACAATTTGGCAAAACACACACACACAGAGCGACA
CTTACGGACACATACCGCTTTTTGATGATCAATTAAACATTTTTATGCAA
CGTTGTACATTGAAGACTCGATGAGATCGAGGCAATCGCCTTAGCCCGGT
GTGTATTTATATGTTTGTAATCGTAATATTCATTTTCCTTTCGTATATTC
GTCTGTATATGCTCAAAAATGGACCAACAACTAAATACATAATACTTGGA
CTATATGTAAAAAAAAAAAAAAAAAA

LD26292.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4-RA 2105 Atg4-RA 46..2104 1..2059 10295 100 Plus
CG4629-RC 3127 CG4629-RC 2829..3127 2059..1761 1495 100 Minus
CG4629-RA 3146 CG4629-RA 2857..3146 2059..1770 1450 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1082675..1083265 1468..2058 2940 99.8 Plus
chr2L 23010047 chr2L 1082003..1082552 919..1468 2675 99.1 Plus
chr2L 23010047 chr2L 1080815..1081314 1..499 2390 99 Plus
chr2L 23010047 chr2L 1081464..1081807 499..842 1690 99.4 Plus
chr2L 23010047 chr2L 1081860..1081943 839..922 405 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1082788..1083379 1468..2059 2960 100 Plus
2L 23513712 2L 1082116..1082665 919..1468 2735 99.8 Plus
2L 23513712 2L 1080929..1081427 1..499 2495 100 Plus
2L 23513712 2L 1081577..1081920 499..842 1720 100 Plus
2L 23513712 2L 1081973..1082056 839..922 405 98.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1082788..1083379 1468..2059 2960 100 Plus
2L 23513712 2L 1082116..1082665 919..1468 2735 99.8 Plus
2L 23513712 2L 1080929..1081427 1..499 2495 100 Plus
2L 23513712 2L 1081577..1081920 499..842 1720 100 Plus
2L 23513712 2L 1081973..1082056 839..922 405 98.8 Plus
Blast to na_te.dros performed on 2019-03-16 16:36:22 has no hits.

LD26292.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:37:35 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1080815..1081314 1..499 99 -> Plus
chr2L 1081465..1081807 500..842 99 -> Plus
chr2L 1081864..1081943 843..922 100 -> Plus
chr2L 1082007..1082552 923..1468 99 -> Plus
chr2L 1082676..1083258 1469..2051 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:21 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 1..1236 316..1551 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:02:42 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 1..1236 316..1551 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:33 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 1..1236 316..1551 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:13 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 1..1236 316..1551 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:35:14 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4a-RA 1..1236 316..1551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:05 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 17..2074 1..2058 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:42 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 17..2074 1..2058 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:33 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 19..2076 1..2058 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:13 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 17..2074 1..2058 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:35:14 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4a-RA 19..2076 1..2058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:35 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1080929..1081427 1..499 100 -> Plus
2L 1081578..1081920 500..842 100 -> Plus
2L 1081977..1082056 843..922 100 -> Plus
2L 1082120..1082665 923..1468 100 -> Plus
2L 1082789..1083378 1469..2058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:35 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1080929..1081427 1..499 100 -> Plus
2L 1081578..1081920 500..842 100 -> Plus
2L 1081977..1082056 843..922 100 -> Plus
2L 1082120..1082665 923..1468 100 -> Plus
2L 1082789..1083378 1469..2058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:35 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1080929..1081427 1..499 100 -> Plus
2L 1081578..1081920 500..842 100 -> Plus
2L 1081977..1082056 843..922 100 -> Plus
2L 1082120..1082665 923..1468 100 -> Plus
2L 1082789..1083378 1469..2058 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:33 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1080929..1081427 1..499 100 -> Plus
arm_2L 1081578..1081920 500..842 100 -> Plus
arm_2L 1081977..1082056 843..922 100 -> Plus
arm_2L 1082120..1082665 923..1468 100 -> Plus
arm_2L 1082789..1083378 1469..2058 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:01 Download gff for LD26292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1081977..1082056 843..922 100 -> Plus
2L 1080929..1081427 1..499 100 -> Plus
2L 1081578..1081920 500..842 100 -> Plus
2L 1082120..1082665 923..1468 100 -> Plus
2L 1082789..1083378 1469..2058 100   Plus

LD26292.hyp Sequence

Translation from 315 to 1550

> LD26292.hyp
MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV
WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML
RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ
IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD
DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG
GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH
AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT
RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG
SGKKPSERAVI*

LD26292.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-PA 411 CG4428-PA 1..411 1..411 2172 100 Plus
Atg4a-PB 410 CG4428-PB 1..410 1..411 2155 99.8 Plus
Atg4b-PA 668 CG6194-PA 263..567 63..333 452 32.9 Plus

LD26292.pep Sequence

Translation from 315 to 1550

> LD26292.pep
MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV
WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML
RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ
IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD
DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG
GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH
AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT
RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG
SGKKPSERAVI*

LD26292.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15159-PA 402 GF15159-PA 1..402 1..411 1956 89.1 Plus
Dana\GF23235-PA 668 GF23235-PA 262..566 63..333 444 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24763-PA 411 GG24763-PA 1..411 1..411 2149 97.8 Plus
Dere\GG20629-PA 708 GG20629-PA 303..607 63..333 456 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13687-PA 393 GH13687-PA 1..387 1..386 1702 83.5 Plus
Dgri\GH16873-PA 673 GH16873-PA 267..573 63..333 485 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-PA 411 CG4428-PA 1..411 1..411 2172 100 Plus
Atg4a-PB 410 CG4428-PB 1..410 1..411 2155 99.8 Plus
Atg4b-PA 668 CG6194-PA 263..567 63..333 452 32.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17971-PA 382 GI17971-PA 1..381 1..386 1709 82.2 Plus
Dmoj\GI10728-PA 682 GI10728-PA 276..578 63..333 481 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15485-PA 409 GL15485-PA 1..409 1..411 1879 86.6 Plus
Dper\GL13755-PA 678 GL13755-PA 265..571 63..333 458 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18177-PA 409 GA18177-PA 1..409 1..411 1884 86.9 Plus
Dpse\GA19429-PB 676 GA19429-PB 265..571 63..333 459 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16788-PA 269 GM16788-PA 1..269 143..411 1410 98.5 Plus
Dsec\GM16787-PA 135 GM16787-PA 1..97 1..97 510 99 Plus
Dsec\GM25780-PA 703 GM25780-PA 298..602 63..333 454 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23066-PA 411 GD23066-PA 1..411 1..411 2179 99.3 Plus
Dsim\GD20357-PA 703 GD20357-PA 298..602 63..333 454 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16311-PA 397 GJ16311-PA 1..387 1..393 1728 81.3 Plus
Dvir\GJ10670-PA 672 GJ10670-PA 266..572 63..333 462 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24338-PA 400 GK24338-PA 1..400 1..411 1658 78.8 Plus
Dwil\GK11310-PA 676 GK11310-PA 272..576 63..333 456 32.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17286-PA 411 GE17286-PA 1..411 1..411 2135 96.8 Plus
Dyak\GE26385-PA 706 GE26385-PA 301..605 63..333 457 33.5 Plus