BDGP Sequence Production Resources |
Search the DGRC for LD26292
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 262 |
Well: | 92 |
Vector: | pOT2 |
Associated Gene/Transcript | Atg4a-RA |
Protein status: | LD26292.pep: gold |
Preliminary Size: | 2029 |
Sequenced Size: | 2076 |
Gene | Date | Evidence |
---|---|---|
CG4428 | 2001-01-01 | Release 2 assignment |
CG4428 | 2001-09-19 | Blastp of sequenced clone |
CG4428 | 2003-01-01 | Sim4 clustering to Release 3 |
Atg4 | 2008-04-29 | Release 5.5 accounting |
Atg4 | 2008-08-15 | Release 5.9 accounting |
Atg4 | 2008-12-18 | 5.12 accounting |
2076 bp (2076 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058573
> LD26292.complete TCATACTAACAGCTACGTCACTGCGTTGTAATCAACAAAAAAGAAAAATA AATCAAACTAAACCAGCCGCAGACTGATCAAATGCTGGTTATCGCATAGT TTGTAATCAGCGCCCGTCACTGCCAACAACAAATGAAACCCCTGTGACCT CGGGCCAGAAGCAGGAGCATTGCCGTTGCTGCCAGCGAAAACACAGGCCA AAACAAAGGCCCACCCGAAAAACAGAACGTCATTCGAAGGCAATTATCGT ATAGACGAGCAGCGGAGGCCCTGGTGTCCACCCCCTTCTCCTTCTGCCAG CGCACCGGGCAGTAGATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGAT CATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCTA GTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCGA AGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGGA GCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATATC GCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGGC TGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGAT CGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGATG CCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTTC TACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGGT CGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTAG TGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAGC ACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGTG GAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATTA ACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAGT TGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCTA TGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACGG GCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGACC TACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCTC GCTGGCGGTTTGTTTCCTCTGCAAGACCAGTGATAGTTTCGAGTCCCTGT TAACCAAGTTGAAGGAGGAGGTGCTCAGCCTCTGCTCGCCTGCGCTCTTC GAGATCAGTCAAACCCGCGCGGTCGATTGGGACACCACGGAGGACATCGA CTGGCCCACCATGCCGGACATCGATTGGCCTGCGGGCACCTCGGATTCGG ACTCTTTTGCCATAGTTGAAGAGAGCGGCAGGGACAGCGACGCCGGCTGT AGCGGCGCCATTGGCAGCGGCAAAAAGCCCAGTGAGAGAGCCGTCATTTG AGAGGTCGCCGGCGGAGCGCCTGCGCCTGCGCCGCACCAGAGCAGATGAA GCCCAGCCAGGCGAAAGTGGAGCACCCAATGAGGAGAAAGAGAGTGGGCC GGGAGGTCGAGCCCCTGCGGATGCTGCGAATGCAATAAACTAAGGCTAAA GTGCATAATTAGACGAGTGGTTGAGATTTAGATTTTAGTATGTTTACGAT TTGTACGAATGCGGTTCTTAGCGATTCATAATGCTGCTTTATTGTACGCG ATTGACTCCACGGGAGACAATTTGGCAAAACACACACACACAGAGCGACA CTTACGGACACATACCGCTTTTTGATGATCAATTAAACATTTTTATGCAA CGTTGTACATTGAAGACTCGATGAGATCGAGGCAATCGCCTTAGCCCGGT GTGTATTTATATGTTTGTAATCGTAATATTCATTTTCCTTTCGTATATTC GTCTGTATATGCTCAAAAATGGACCAACAACTAAATACATAATACTTGGA CTATATGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1082675..1083265 | 1468..2058 | 2940 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 1082003..1082552 | 919..1468 | 2675 | 99.1 | Plus |
chr2L | 23010047 | chr2L | 1080815..1081314 | 1..499 | 2390 | 99 | Plus |
chr2L | 23010047 | chr2L | 1081464..1081807 | 499..842 | 1690 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 1081860..1081943 | 839..922 | 405 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1082788..1083379 | 1468..2059 | 2960 | 100 | Plus |
2L | 23513712 | 2L | 1082116..1082665 | 919..1468 | 2735 | 99.8 | Plus |
2L | 23513712 | 2L | 1080929..1081427 | 1..499 | 2495 | 100 | Plus |
2L | 23513712 | 2L | 1081577..1081920 | 499..842 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 1081973..1082056 | 839..922 | 405 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1082788..1083379 | 1468..2059 | 2960 | 100 | Plus |
2L | 23513712 | 2L | 1082116..1082665 | 919..1468 | 2735 | 99.8 | Plus |
2L | 23513712 | 2L | 1080929..1081427 | 1..499 | 2495 | 100 | Plus |
2L | 23513712 | 2L | 1081577..1081920 | 499..842 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 1081973..1082056 | 839..922 | 405 | 98.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1080815..1081314 | 1..499 | 99 | -> | Plus |
chr2L | 1081465..1081807 | 500..842 | 99 | -> | Plus |
chr2L | 1081864..1081943 | 843..922 | 100 | -> | Plus |
chr2L | 1082007..1082552 | 923..1468 | 99 | -> | Plus |
chr2L | 1082676..1083258 | 1469..2051 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 1..1236 | 316..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 1..1236 | 316..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 1..1236 | 316..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 1..1236 | 316..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4a-RA | 1..1236 | 316..1551 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 17..2074 | 1..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 17..2074 | 1..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 19..2076 | 1..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4-RA | 17..2074 | 1..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg4a-RA | 19..2076 | 1..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1080929..1081427 | 1..499 | 100 | -> | Plus |
2L | 1081578..1081920 | 500..842 | 100 | -> | Plus |
2L | 1081977..1082056 | 843..922 | 100 | -> | Plus |
2L | 1082120..1082665 | 923..1468 | 100 | -> | Plus |
2L | 1082789..1083378 | 1469..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1080929..1081427 | 1..499 | 100 | -> | Plus |
2L | 1081578..1081920 | 500..842 | 100 | -> | Plus |
2L | 1081977..1082056 | 843..922 | 100 | -> | Plus |
2L | 1082120..1082665 | 923..1468 | 100 | -> | Plus |
2L | 1082789..1083378 | 1469..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1080929..1081427 | 1..499 | 100 | -> | Plus |
2L | 1081578..1081920 | 500..842 | 100 | -> | Plus |
2L | 1081977..1082056 | 843..922 | 100 | -> | Plus |
2L | 1082120..1082665 | 923..1468 | 100 | -> | Plus |
2L | 1082789..1083378 | 1469..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1080929..1081427 | 1..499 | 100 | -> | Plus |
arm_2L | 1081578..1081920 | 500..842 | 100 | -> | Plus |
arm_2L | 1081977..1082056 | 843..922 | 100 | -> | Plus |
arm_2L | 1082120..1082665 | 923..1468 | 100 | -> | Plus |
arm_2L | 1082789..1083378 | 1469..2058 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1081977..1082056 | 843..922 | 100 | -> | Plus |
2L | 1080929..1081427 | 1..499 | 100 | -> | Plus |
2L | 1081578..1081920 | 500..842 | 100 | -> | Plus |
2L | 1082120..1082665 | 923..1468 | 100 | -> | Plus |
2L | 1082789..1083378 | 1469..2058 | 100 | Plus |
Translation from 315 to 1550
> LD26292.hyp MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG SGKKPSERAVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg4a-PA | 411 | CG4428-PA | 1..411 | 1..411 | 2172 | 100 | Plus |
Atg4a-PB | 410 | CG4428-PB | 1..410 | 1..411 | 2155 | 99.8 | Plus |
Atg4b-PA | 668 | CG6194-PA | 263..567 | 63..333 | 452 | 32.9 | Plus |
Translation from 315 to 1550
> LD26292.pep MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG SGKKPSERAVI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15159-PA | 402 | GF15159-PA | 1..402 | 1..411 | 1956 | 89.1 | Plus |
Dana\GF23235-PA | 668 | GF23235-PA | 262..566 | 63..333 | 444 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24763-PA | 411 | GG24763-PA | 1..411 | 1..411 | 2149 | 97.8 | Plus |
Dere\GG20629-PA | 708 | GG20629-PA | 303..607 | 63..333 | 456 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13687-PA | 393 | GH13687-PA | 1..387 | 1..386 | 1702 | 83.5 | Plus |
Dgri\GH16873-PA | 673 | GH16873-PA | 267..573 | 63..333 | 485 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg4a-PA | 411 | CG4428-PA | 1..411 | 1..411 | 2172 | 100 | Plus |
Atg4a-PB | 410 | CG4428-PB | 1..410 | 1..411 | 2155 | 99.8 | Plus |
Atg4b-PA | 668 | CG6194-PA | 263..567 | 63..333 | 452 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17971-PA | 382 | GI17971-PA | 1..381 | 1..386 | 1709 | 82.2 | Plus |
Dmoj\GI10728-PA | 682 | GI10728-PA | 276..578 | 63..333 | 481 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15485-PA | 409 | GL15485-PA | 1..409 | 1..411 | 1879 | 86.6 | Plus |
Dper\GL13755-PA | 678 | GL13755-PA | 265..571 | 63..333 | 458 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18177-PA | 409 | GA18177-PA | 1..409 | 1..411 | 1884 | 86.9 | Plus |
Dpse\GA19429-PB | 676 | GA19429-PB | 265..571 | 63..333 | 459 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16788-PA | 269 | GM16788-PA | 1..269 | 143..411 | 1410 | 98.5 | Plus |
Dsec\GM16787-PA | 135 | GM16787-PA | 1..97 | 1..97 | 510 | 99 | Plus |
Dsec\GM25780-PA | 703 | GM25780-PA | 298..602 | 63..333 | 454 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23066-PA | 411 | GD23066-PA | 1..411 | 1..411 | 2179 | 99.3 | Plus |
Dsim\GD20357-PA | 703 | GD20357-PA | 298..602 | 63..333 | 454 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16311-PA | 397 | GJ16311-PA | 1..387 | 1..393 | 1728 | 81.3 | Plus |
Dvir\GJ10670-PA | 672 | GJ10670-PA | 266..572 | 63..333 | 462 | 33.3 | Plus |