Clone LD26327 Report

Search the DGRC for LD26327

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:263
Well:27
Vector:pOT2
Associated Gene/TranscriptCG7298-RA
Protein status:LD26327.pep: gold
Preliminary Size:1322
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7298 2001-01-01 Release 2 assignment
CG7298 2003-01-01 Sim4 clustering to Release 3
CG7298 2003-01-14 Blastp of sequenced clone
CG7298 2008-04-29 Release 5.5 accounting
CG7298 2008-08-15 Release 5.9 accounting
CG7298 2008-12-18 5.12 accounting

Clone Sequence Records

LD26327.complete Sequence

1321 bp (1321 high quality bases) assembled on 2003-01-14

GenBank Submission: AY061336

> LD26327.complete
CTTTCATTGGCCGATACAAGTGGTATTCGATCCCCAACAGCGGCAAAAAG
TATTACCAACTAACGATGACAGGCAAACTTCTACTGGCCACGATCCTGTG
CCTAATGGGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTACA
ACGTTACGGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAGC
ATCGAATCCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGCA
GTCCTCGTGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGCT
ATCCAAGCAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGCT
GGCAAGAATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGTT
CTACTGCCTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAACC
AGAAATTCGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAAC
ACTCAAGGTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGCC
ACCTGGCCAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTACT
GCGAGTCCACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGCA
AACAATCAAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAAG
TGCCTCCGTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCAG
TTTCCTGCTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGGC
ACCTATTATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCAC
TGGCGACTACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTCG
CCACTCCGGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTTT
GTAAACGCCGTCGATTCGAATAACTGCTCCACCTACTACTATTGCAACAG
CCAGGGCGAGGCCACTTTGAACACCTGCCCGGCCGATACATTCTTCGATG
AGTCACGTCAGGGATGCAAGTCCGACGACGACCTGTCCACATATGTGCCA
TTGAACGGAGCCTGCAAAGGAGCCACCGCCGAAGGATCAGAAGAAACCGA
TAATAGTACGACCGATGCCGAATAAGCCCAATTATCGTGAAGGGCTTTCA
GGTTGGAACTCAACGGAACAGGAGTAACTGACAACGCGACCCTATGTATT
TACCACTTAGTATTCAGTATCTAATAAATGCAATAAAAGCTATGTTCGCA
AGCAAAAAAAAAAAAAAAAAA

LD26327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-RA 1473 CG7298-RA 133..1438 1..1306 6530 100 Plus
CG7298.a 1304 CG7298.a 69..1302 73..1306 6170 100 Plus
CG7298.b 1172 CG7298.b 527..1170 663..1306 3220 100 Plus
CG7298.b 1172 CG7298.b 20..527 1..508 2540 100 Plus
CG7298.a 1304 CG7298.a 20..69 1..50 250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20191257..20191897 1303..663 3205 100 Minus
chr3L 24539361 chr3L 20192100..20192693 663..70 2970 100 Minus
chr3L 24539361 chr3L 20192779..20192854 76..1 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20202067..20202710 1306..663 3220 100 Minus
3L 28110227 3L 20202913..20203506 663..70 2970 100 Minus
3L 28110227 3L 20203592..20203667 76..1 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20195167..20195810 1306..663 3220 100 Minus
3L 28103327 3L 20196013..20196606 663..70 2970 100 Minus
3L 28103327 3L 20196692..20196767 76..1 380 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:09:53 has no hits.

LD26327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:10:32 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20192783..20192854 1..72 100   Minus
chr3L 20191257..20191897 663..1303 100 <- Minus
chr3L 20192101..20192690 73..662 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:23 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 66..1175 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:16 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 66..1175 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:07:15 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 66..1175 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:05 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 66..1175 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:58:47 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 1..1110 66..1175 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:17 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 20..1322 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:15 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 20..1322 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:15 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 21..1323 1..1303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:05 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 20..1322 1..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:58:47 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
CG7298-RA 21..1323 1..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:32 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20202070..20202710 663..1303 100 <- Minus
3L 20202914..20203503 73..662 100 <- Minus
3L 20203596..20203667 1..72 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:32 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20202070..20202710 663..1303 100 <- Minus
3L 20202914..20203503 73..662 100 <- Minus
3L 20203596..20203667 1..72 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:10:32 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20202070..20202710 663..1303 100 <- Minus
3L 20202914..20203503 73..662 100 <- Minus
3L 20203596..20203667 1..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:15 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20195170..20195810 663..1303 100 <- Minus
arm_3L 20196014..20196603 73..662 100 <- Minus
arm_3L 20196696..20196767 1..72 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:28 Download gff for LD26327.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20195170..20195810 663..1303 100 <- Minus
3L 20196014..20196603 73..662 100 <- Minus
3L 20196696..20196767 1..72 100   Minus

LD26327.hyp Sequence

Translation from 2 to 1174

> LD26327.hyp
FIGRYKWYSIPNSGKKYYQLTMTGKLLLATILCLMGGQALGDAILEGNYN
VTAVCTAVKVGTQLGSIESCQTYYVCQSTGPVQSSCQSGYSYDYKRSSCY
PSSEVDCYWGVENPCAGKNNTWVPNTAVCGGWFYCLEGKSAGSGNCPVNQ
KFDTTTLACVYGTCSNTQGTNETVLESLCDVVPPGQYFGDTESCSTWHYC
ESTSTGLVLQSGKCSANNQTAYNVLANQCTYESASVCSRVTNIPLSDAAV
SCSTNGAKSADPKVCGTYYVCTNGKNVATYCPTGDYYDDSLGYCVSRQVA
TPVAGCNRCQYATSTFVNAVDSNNCSTYYYCNSQGEATLNTCPADTFFDE
SRQGCKSDDDLSTYVPLNGACKGATAEGSEETDNSTTDAE*

LD26327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-PA 369 CG7298-PA 1..369 22..390 2036 100 Plus
CG7290-PB 419 CG7290-PB 6..359 29..389 526 33.8 Plus
CG7290-PA 419 CG7290-PA 6..359 29..389 526 33.8 Plus
CG6996-PC 364 CG6996-PC 23..353 49..387 309 27.6 Plus
CG17147-PB 337 CG17147-PB 14..325 26..357 308 27.4 Plus

LD26327.pep Sequence

Translation from 65 to 1174

> LD26327.pep
MTGKLLLATILCLMGGQALGDAILEGNYNVTAVCTAVKVGTQLGSIESCQ
TYYVCQSTGPVQSSCQSGYSYDYKRSSCYPSSEVDCYWGVENPCAGKNNT
WVPNTAVCGGWFYCLEGKSAGSGNCPVNQKFDTTTLACVYGTCSNTQGTN
ETVLESLCDVVPPGQYFGDTESCSTWHYCESTSTGLVLQSGKCSANNQTA
YNVLANQCTYESASVCSRVTNIPLSDAAVSCSTNGAKSADPKVCGTYYVC
TNGKNVATYCPTGDYYDDSLGYCVSRQVATPVAGCNRCQYATSTFVNAVD
SNNCSTYYYCNSQGEATLNTCPADTFFDESRQGCKSDDDLSTYVPLNGAC
KGATAEGSEETDNSTTDAE*

LD26327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24481-PA 398 GF24481-PA 1..350 1..350 828 49.7 Plus
Dana\GF24480-PA 459 GF24480-PA 1..334 14..334 374 33.1 Plus
Dana\GF25314-PA 336 GF25314-PA 9..324 5..336 266 27.5 Plus
Dana\GF25312-PA 347 GF25312-PA 1..321 6..334 230 25.7 Plus
Dana\GF24479-PA 366 GF24479-PA 3..346 2..334 195 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13335-PA 365 GG13335-PA 1..357 1..357 1378 74.2 Plus
Dere\GG16613-PA 265 GG16613-PA 27..198 157..334 245 37 Plus
Dere\GG16084-PA 352 GG16084-PA 1..321 1..334 243 27.8 Plus
Dere\GG16088-PA 336 GG16088-PA 31..325 33..337 216 27.1 Plus
Dere\GG13334-PA 359 GG13334-PA 11..347 13..334 160 24.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10093-PA 366 GH10093-PA 1..306 1..317 607 46.2 Plus
Dgri\GH10094-PA 291 GH10094-PA 1..230 1..241 422 44.2 Plus
Dgri\GH16336-PA 324 GH16336-PA 1..288 43..334 211 24.8 Plus
Dgri\GH15115-PA 336 GH15115-PA 9..324 30..334 208 24.2 Plus
Dgri\GH16338-PA 304 GH16338-PA 1..302 33..352 206 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7298-PA 369 CG7298-PA 1..369 1..369 2036 100 Plus
CG7290-PB 419 CG7290-PB 6..359 8..368 526 33.8 Plus
CG7290-PA 419 CG7290-PA 6..359 8..368 526 33.8 Plus
CG6996-PC 364 CG6996-PC 23..353 28..366 309 27.6 Plus
CG6996-PB 364 CG6996-PB 23..353 28..366 309 27.6 Plus
CG17147-PB 337 CG17147-PB 14..325 5..336 308 27.4 Plus
CG43896-PB 1324 CG43896-PB 73..413 12..367 273 25.3 Plus
CG43896-PD 2113 CG43896-PD 73..413 12..367 273 25.3 Plus
CG43896-PC 2113 CG43896-PC 73..413 12..367 273 25.3 Plus
CG5883-PA 339 CG5883-PA 9..329 5..336 258 25.6 Plus
CG43896-PB 1324 CG43896-PB 167..466 48..339 233 24.9 Plus
CG43896-PD 2113 CG43896-PD 167..466 48..339 233 24.9 Plus
CG43896-PC 2113 CG43896-PC 167..466 48..339 233 24.9 Plus
CG7017-PB 359 CG7017-PB 11..347 13..334 207 25 Plus
CG7017-PA 359 CG7017-PA 11..347 13..334 207 25 Plus
CG17145-PB 334 CG17145-PB 29..333 33..351 197 22.9 Plus
CG17145-PA 334 CG17145-PA 29..333 33..351 197 22.9 Plus
CG31077-PB 988 CG31077-PB 39..306 40..339 197 22.9 Plus
CG7248-PA 796 CG7248-PA 75..439 48..366 189 22.3 Plus
CG43896-PB 1324 CG43896-PB 38..281 103..361 182 22.1 Plus
CG43896-PD 2113 CG43896-PD 38..281 103..361 182 22.1 Plus
CG43896-PC 2113 CG43896-PC 38..281 103..361 182 22.1 Plus
CG43896-PB 1324 CG43896-PB 357..647 47..341 181 23.1 Plus
CG43896-PD 2113 CG43896-PD 357..647 47..341 181 23.1 Plus
CG43896-PC 2113 CG43896-PC 357..647 47..341 181 23.1 Plus
CG17826-PA 751 CG17826-PA 292..565 33..363 181 22.6 Plus
CG17826-PA 751 CG17826-PA 186..451 33..352 180 22.4 Plus
obst-J-PA 353 CG7348-PA 1..259 1..273 177 23 Plus
CG6933-PE 351 CG6933-PE 7..335 4..334 170 21.9 Plus
CG6933-PB 351 CG6933-PB 7..335 4..334 170 21.9 Plus
CG6933-PA 351 CG6933-PA 7..335 4..334 170 21.9 Plus
CG6933-PD 363 CG6933-PD 19..347 4..334 170 21.9 Plus
CG6933-PC 363 CG6933-PC 19..347 4..334 170 21.9 Plus
CG17826-PA 751 CG17826-PA 25..290 31..339 168 22.6 Plus
CG5897-PC 343 CG5897-PC 38..332 43..337 168 21.8 Plus
CG7248-PA 796 CG7248-PA 293..582 34..328 166 22.8 Plus
CG43896-PD 2113 CG43896-PD 1461..1747 49..361 165 21.1 Plus
CG43896-PC 2113 CG43896-PC 1461..1747 49..361 165 21.1 Plus
CG43896-PD 2113 CG43896-PD 1682..1946 32..280 162 22 Plus
CG43896-PC 2113 CG43896-PC 1682..1946 32..280 162 22 Plus
CG43896-PB 1324 CG43896-PB 495..753 40..334 160 21.7 Plus
CG43896-PD 2113 CG43896-PD 495..753 40..334 160 21.7 Plus
CG43896-PC 2113 CG43896-PC 495..753 40..334 160 21.7 Plus
CG7017-PB 359 CG7017-PB 45..291 103..335 159 23.3 Plus
CG7017-PA 359 CG7017-PA 45..291 103..335 159 23.3 Plus
CG31077-PB 988 CG31077-PB 271..533 48..339 158 23.8 Plus
obst-J-PA 353 CG7348-PA 63..273 124..356 155 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14343-PA 414 GI14343-PA 1..332 1..343 714 45.6 Plus
Dmoj\GI13766-PA 360 GI13766-PA 32..348 30..334 241 27 Plus
Dmoj\GI11529-PA 334 GI11529-PA 9..332 2..352 215 26.2 Plus
Dmoj\GI11528-PA 316 GI11528-PA 1..293 43..344 209 24.3 Plus
Dmoj\GI11740-PA 1458 GI11740-PA 309..588 47..339 167 26.9 Plus
Dmoj\GI11740-PA 1458 GI11740-PA 58..370 40..369 164 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25052-PA 381 GL25052-PA 1..363 1..369 874 50.8 Plus
Dper\GL25051-PA 383 GL25051-PA 22..335 22..334 376 34.2 Plus
Dper\GL25120-PA 338 GL25120-PA 10..323 1..336 226 25.8 Plus
Dper\GL25049-PA 401 GL25049-PA 65..386 21..334 210 26.8 Plus
Dper\GL25118-PA 371 GL25118-PA 9..319 19..334 203 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23596-PA 381 GA23596-PA 1..362 1..364 866 50.8 Plus
Dpse\GA23597-PA 375 GA23597-PA 14..327 22..334 395 35.1 Plus
Dpse\GA23689-PA 338 GA23689-PA 10..323 1..336 229 25.8 Plus
Dpse\GA20035-PA 394 GA20035-PA 58..379 21..334 207 26.8 Plus
Dpse\GA20015-PA 369 GA20015-PA 9..319 19..334 198 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22242-PA 368 GM22242-PA 1..366 1..368 1639 85.6 Plus
Dsec\GM22240-PA 419 GM22240-PA 6..330 8..334 436 36.6 Plus
Dsec\GM22261-PA 338 GM22261-PA 8..326 5..336 230 26.6 Plus
Dsec\GM22259-PA 360 GM22259-PA 23..321 28..334 201 26.7 Plus
Dsec\GM24691-PA 340 GM24691-PA 34..330 33..336 182 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12213-PA 368 GD12213-PA 1..366 1..368 1688 88 Plus
Dsim\GD12212-PA 419 GD12212-PA 6..330 8..334 438 37.2 Plus
Dsim\GD14860-PA 338 GD14860-PA 8..326 5..336 241 26.8 Plus
Dsim\GD14858-PA 358 GD14858-PA 23..321 28..334 202 27.6 Plus
Dsim\GD12761-PA 340 GD12761-PA 34..330 33..336 165 24.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16249-PA 381 GJ16249-PA 1..341 1..355 732 46.1 Plus
Dvir\GJ11548-PA 334 GJ11548-PA 22..322 24..336 219 26.2 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 118..465 3..334 213 23.9 Plus
Dvir\GJ11547-PA 349 GJ11547-PA 23..326 24..334 209 24.8 Plus
Dvir\GJ11411-PA 1579 GJ11411-PA 331..622 33..339 186 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17245-PA 383 GK17245-PA 7..350 4..353 730 45.9 Plus
Dwil\GK17244-PA 359 GK17244-PA 23..352 22..348 297 30.9 Plus
Dwil\GK16940-PA 338 GK16940-PA 1..288 43..336 203 23.8 Plus
Dwil\GK16942-PA 338 GK16942-PA 29..336 33..352 187 26.9 Plus
Dwil\GK13618-PA 345 GK13618-PA 6..345 4..355 178 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22942-PA 363 GE22942-PA 1..362 1..365 1345 71.6 Plus
Dyak\GE22941-PA 446 GE22941-PA 6..332 8..336 410 35.5 Plus
Dyak\GE19650-PA 336 GE19650-PA 31..324 33..336 218 26 Plus
Dyak\GE19648-PA 358 GE19648-PA 7..321 5..334 206 26.3 Plus
Dyak\GE23066-PA 358 GE23066-PA 7..321 5..334 206 26.3 Plus