Clone LD26447 Report

Search the DGRC for LD26447

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:264
Well:47
Vector:pOT2
Associated Gene/TranscriptCG4365-RA
Protein status:LD26447.pep: gold
Preliminary Size:1218
Sequenced Size:1110

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4365 2001-01-01 Release 2 assignment
CG4365 2001-10-10 Blastp of sequenced clone
CG4365 2003-01-01 Sim4 clustering to Release 3
CG4365 2008-04-29 Release 5.5 accounting
CG4365 2008-08-15 Release 5.9 accounting
CG4365 2008-12-18 5.12 accounting

Clone Sequence Records

LD26447.complete Sequence

1110 bp (1110 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061337

> LD26447.complete
AAAAAAACAACTGTAATTAGGAGCCATAATTAATTCATTTCGAATCGCAC
ACGCTTTTCAGTTTATCTAGCCGAAAGTACAGAATGTTGGCCTCCGCCTG
GCGCAGCGTGGCCACCTCCGTGGAGACCCAGTTGACGGCCACCTACTTCC
GAGTGCAAAAACTACGAAAAGTCGGCTTCAGAGGCATGCACAGCACATTG
GAGGACGTGCAGCTGGAGGGCATGGAGATCAAGATCCTGCCGGCCCTGCA
GGATAACTATATGTATCTGATTGTAGACACGAAGACGCGCGAGGCGGCCG
TGGTGGATCCCGTGGAGCCGGAGCTGGTCATTAAGACGGTGCAGGAGCAG
CAGCTGACCCTCAGCAAGGTGCTGACCACGCACCATCACTGGGACCACGC
CGGTGGCAATGAAAAGCTGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGT
ATGGCGGCGATGACCGCATCGGGGCATTGAACAAAAAGGTTCAGCAGGAC
GACACCTTCACCATTGGTGGTCTGCATGTCAAGTGCTTGTCCACGCCGTG
CCACACTACCGGCCACATCTGCTACCACATCACCGCGCAGCAGGGCAGCG
GCGAGGGAGCCGTCTTCACCGGCGACACCCTCTTCCAGGGCGGATGCGGC
CGCTTCTTCGAGGGCACTCCCGAGGAAATGTACGAGGCGCTGTGCACAAA
GCTCTCCGCCTTGCCGGACGCCACAAAGGTGTTCTGTGGCCACGAGTACA
CGCTGCAGAACATGAGCTTCGCCCGTCACGTCGAGCCCGACAACGAGGTC
ATCCAGCAGAGGATCGAGTGGGCCAAGCACCGGCGCGCCTCCCAGGATCC
CACTGTGCCCTCCACCATTGGCGAGGAGAAGTCCTGGAACCCCTTTATGC
GCGTTCACGAAGCCACCGTGCAGAAGCACGCTGGCGGAGCCACCGATCCC
GTCGTCACCATGGGCAAGCTGCGCAAGGAAAAGGACACCTTCAAAGCCTG
ATCTATTTCCTCGAAAGTTTCGAAACTTGTGATTTAATATTGGATTTTAA
TGGTTAATAAAATTAACGATGTGTGTGAAGTGCGGACAATGGAAAAAAAA
AAAAAAAAAA

LD26447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1212 CG4365-RA 52..1144 1..1093 5465 100 Plus
CG4365.g 1294 CG4365.g 343..1282 154..1093 4700 100 Plus
CG4365-RC 1340 CG4365-RC 333..1272 154..1093 4700 100 Plus
CG4365.g 1294 CG4365.g 50..202 1..153 765 100 Plus
CG4365-RC 1340 CG4365-RC 51..203 1..153 765 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20788162..20789102 152..1092 4705 100 Plus
chr3L 24539361 chr3L 20787728..20787880 1..153 765 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20800082 152..1093 4710 100 Plus
3L 28110227 3L 20798707..20798859 1..153 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20792241..20793182 152..1093 4710 100 Plus
3L 28103327 3L 20791807..20791959 1..153 765 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:06:20 has no hits.

LD26447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:07:05 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20787728..20787880 1..153 100 -> Plus
chr3L 20788164..20789102 154..1092 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:35 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 84..1001 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:56:31 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 84..1001 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:44 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 84..1001 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:25:39 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 84..1001 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:52 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 84..1001 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:42:31 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:56:31 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:44 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:25:39 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..1092 1..1092 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:52 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..1092 1..1092 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:05 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20798707..20798859 1..153 100 -> Plus
3L 20799143..20800081 154..1092 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:05 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20798707..20798859 1..153 100 -> Plus
3L 20799143..20800081 154..1092 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:05 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20798707..20798859 1..153 100 -> Plus
3L 20799143..20800081 154..1092 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:44 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791807..20791959 1..153 100 -> Plus
arm_3L 20792243..20793181 154..1092 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:50 Download gff for LD26447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20792243..20793181 154..1092 100   Plus
3L 20791807..20791959 1..153 100 -> Plus

LD26447.hyp Sequence

Translation from 83 to 1000

> LD26447.hyp
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKA*

LD26447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 305 CG4365-PA 1..305 1..305 1621 100 Plus
CG4365-PC 348 CG4365-PC 1..348 1..305 1564 87.4 Plus
CG4365-PB 271 CG4365-PB 1..271 35..305 1453 100 Plus
CG30022-PB 279 CG30022-PB 61..221 59..222 209 32.1 Plus

LD26447.pep Sequence

Translation from 83 to 1000

> LD26447.pep
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKA*

LD26447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10361-PA 305 GF10361-PA 1..305 1..305 1503 88.5 Plus
Dana\GF12395-PA 657 GF12395-PA 35..196 59..223 227 33.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16137-PA 348 GG16137-PA 1..348 1..305 1536 82.8 Plus
Dere\GG22649-PA 660 GG22649-PA 35..196 59..223 220 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16754-PA 303 GH16754-PA 1..303 1..305 1395 81.6 Plus
Dgri\GH20506-PA 698 GH20506-PA 35..196 59..223 205 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
tzn-PA 305 CG4365-PA 1..305 1..305 1621 100 Plus
tzn-PC 348 CG4365-PC 1..348 1..305 1564 87.4 Plus
tzn-PB 271 CG4365-PB 1..271 35..305 1453 100 Plus
CG30022-PB 279 CG30022-PB 61..221 59..222 209 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13415-PA 301 GI13415-PA 1..301 1..305 1308 76.4 Plus
Dmoj\GI21050-PA 859 GI21050-PA 35..198 59..225 225 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12815-PA 305 GL12815-PA 1..305 1..305 1499 88.5 Plus
Dper\GL10396-PA 622 GL10396-PA 404..567 59..225 209 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18136-PA 305 GA18136-PA 1..305 1..305 1502 88.9 Plus
Dpse\GA30464-PA 296 GA30464-PA 78..241 59..225 229 35.2 Plus
Dpse\GA24963-PB 268 GA24963-PB 50..210 59..222 210 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22320-PA 348 GM22320-PA 1..348 1..305 1568 85.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14908-PA 348 GD14908-PA 1..348 1..305 1572 86.2 Plus
Dsim\GD25902-PA 657 GD25902-PA 35..196 59..223 215 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11540-PA 305 GJ11540-PA 1..305 1..305 1386 80.7 Plus
Dvir\GJ21974-PA 673 GJ21974-PA 35..196 59..223 227 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10504-PA 308 GK10504-PA 1..308 1..305 1393 82.5 Plus
Dwil\GK21885-PA 847 GK21885-PA 35..198 59..225 224 32.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19704-PA 348 GE19704-PA 1..348 1..305 1538 83.3 Plus
Dyak\GE19707-PA 348 GE19707-PA 1..348 1..305 1538 83.3 Plus
Dyak\GE13523-PA 658 GE13523-PA 35..196 59..223 220 32.5 Plus