Clone LD26477 Report

Search the DGRC for LD26477

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:264
Well:77
Vector:pOT2
Associated Gene/TranscriptCG11504-RA
Protein status:LD26477.pep: gold
Preliminary Size:2131
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11504 2001-01-01 Release 2 assignment
CG11504 2001-07-04 Blastp of sequenced clone
CG11504 2003-01-01 Sim4 clustering to Release 3
CG11504 2008-04-29 Release 5.5 accounting
CG11504 2008-08-15 Release 5.9 accounting
CG11504 2008-12-18 5.12 accounting

Clone Sequence Records

LD26477.complete Sequence

1980 bp (1980 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051738

> LD26477.complete
CAGATTAAGGAGGCGTATCAAGATATTAAAAATACATAATTACTTTAGTG
ACGAAAGCAACCACATTCCACAACGAATACGGTCTGATCGAAACAACCGA
TGAATCGATAGCGGCCAAGATGGATACACAGCGTTTGTTTTTGCGCAAGG
GGGTGGAAATCGGAAATCTGCTGTACTTTCGTGCATTTTAAACAAACCAA
ATAGGCATTATAGCCGATGGAAGTGGACCCAGCATCCTTCCAGCTCCTCT
AGGCACCCGTTCCAGGGCCCGGCGGCTAGTCCGTCCCTGCCAATTGGCGC
AGCGACATCGGCAGAGCGCAACCAGCTGCTGTTTGGAGTAGCAAAAATAA
ACCAGAGCACAGCTCCCGCTCCCGCTCCCGAGCACAGAGACTATCCCGAT
CCGCATCGAGGTAACTTCTGTGGTCTATTAATATTAGTGGCCGGCTAACC
AGTGCGCGATCCCTTCCCCGACAGAAAGGGAGAACCGACAGCCCATTGTT
CTGACACCGATTCTAGATTGCCCGGCCAGATCCGACTCAGCGATCTAAAA
ATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGATCAGTGAGTACCGCAG
CCGACGCGGGCTGTGGGACATGACTTGCGACGAGTACCGGAAGAAGGACG
TCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGTGCTGGGCGGGAACATC
CCGATCAACGAGCTGGAGAAGAAGTTCCACACGCTGCGCACGCAGTACCA
CCGCGAGATCAGTCGCATGAAACGCAAGGAGCCCTACAACTCCAAGTGGT
TTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCCCTACGCCTGCCGCTCC
ACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCGACGAGCGAAAGTTTGT
CCTGGGCGAGGTCACCGCCGATCATAACAGCGACAGCAGCACGCCGGCCA
ATCACAACAGCAACACGAACGCCAACATGAACGAGGAGTACCTCCGCAAG
AACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGAAACTTATCGAGGAGAC
AACCAAAGACGTGGATGACATTGATGAGTCGGAGCTAGAGGAGGGCGAAG
TCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCGCTTTGTAAGCCTCAAC
GAACAGGAAGAGACGGAGCCGCTGGAGAATCATCATCAGACGCTGATGGA
CCTGCACCACCAGGGCAACGCCGTGGAAGCCGTCAGCTTCCAGGCCAACG
AGAGCGGTGAACTGCACTACCAGACCACACCAACCCAAAGCACGGGCAGC
AGCTCAGTGCACGTAATGCCCACACGAATCATTAAGATCCAGCGGCGGGA
CACGTCGAGTGGGCAGGAGGATAGCTACTTTGAGGAGCACACGCAACTGC
ATCCGCCGCCGGTCAAACGCATGTACTACGAAGCCAGTCCAGCGTCGCAC
AACACCACCTCCATTCTGTCCCCCGCACTGGAAAGCAGTGCCAATGGCAC
AGCCAGCAGTGTGCTGACCACCTCGCCCGGAATAACCATGAGTAACTTGC
GCTTGCCCAAGGTGAACACGCCGCCCAAACCAGCCCAGGCCCAAGCCATC
CCCAGTCCACCTCCGCCCACCATTGTCAGCCTGCCGCCAGCGCGCGACGA
GTTTGCAACGTATGGAGAGTACGTGGCCAACGAGATGCGCGCCATCAGCA
ATCGGGAGGTGCTTGTCGCCCTCAAGCACCGCATCAACACGGCCATCTTC
GAGGCTAGCATGGCCGAAATAGCCCCGAAATAGATTGATCACTTAGCTAG
AGCTATTAACTACAACTTTAGGTTTAAGGCCTTTGTCTCTGTGCTTTTTA
TAGGCCTCGTCCCCCGTGACTTGTATTCTCATTTGAATTTGTACATTTAA
CATATATATGTATGTAACGATTTAAATACTAAGCCAAATATAAAATTTAG
TGGAATTTCAAAAAAAAAAAAAAAAAAAAA

LD26477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RB 1959 CG11504-RB 2..1959 2..1959 9790 100 Plus
CG11504-RA 1914 CG11504-RA 409..1900 473..1964 7460 100 Plus
CG11504-RC 1891 CG11504-RC 409..1891 477..1959 7415 100 Plus
CG11504-RC 1891 CG11504-RC 2..411 2..411 2050 100 Plus
CG11504-RA 1914 CG11504-RA 2..410 2..410 2045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25820177..25822133 2..1959 9515 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29997798..29999760 2..1964 9815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29738629..29740591 2..1964 9815 100 Plus
Blast to na_te.dros performed 2019-03-16 11:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 924..1014 122 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 926..1018 120 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 926..1012 120 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6922 924..1058 118 58 Plus

LD26477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:30:32 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25820175..25822133 1..1959 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:36 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 1..1233 551..1783 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:20:59 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 1..1233 551..1783 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:26:42 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1233 551..1783 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:42 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 1..1233 551..1783 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:59 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1233 551..1783 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:36 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1959 2..1959 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:20:59 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1959 2..1959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:26:42 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1856 104..1959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:43 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1959 2..1959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:59 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 1..1856 104..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:32 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29997797..29999755 1..1959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:32 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29997797..29999755 1..1959 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:30:32 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29997797..29999755 1..1959 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:26:42 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25823519..25825477 1..1959 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:10 Download gff for LD26477.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29738628..29740586 1..1959 99   Plus

LD26477.pep Sequence

Translation from 550 to 1782

> LD26477.pep
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPK*

LD26477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18813-PA 407 GF18813-PA 1..405 1..407 1620 76 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11716-PA 410 GG11716-PA 1..410 1..410 2156 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18541-PA 442 GH18541-PA 1..440 1..407 1183 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PC 410 CG11504-PC 1..410 1..410 2124 100 Plus
CG11504-PA 410 CG11504-PA 1..410 1..410 2124 100 Plus
CG11504-PB 410 CG11504-PB 1..410 1..410 2124 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10800-PA 453 GI10800-PA 1..451 1..407 1243 58.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14014-PA 362 GL14014-PA 1..360 1..407 1113 60.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11039-PA 362 GA11039-PA 1..360 1..407 1111 60 Plus
Dpse\GA25556-PA 115 GA25556-PA 2..96 3..92 150 37.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12848-PA 219 GM12848-PA 1..219 192..410 1140 98.2 Plus
Dsec\GM12846-PA 113 GM12846-PA 1..103 1..103 520 91.3 Plus
Dsec\GM17172-PA 575 GM17172-PA 81..177 1..94 155 34.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21490-PA 410 GD21490-PA 1..410 1..410 2189 99 Plus
Dsim\GD11967-PA 281 GD11967-PA 81..177 1..94 151 34.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14398-PA 427 GJ14398-PA 1..425 1..407 1274 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13919-PA 426 GK13919-PA 1..424 1..407 1166 59.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23908-PA 410 GE23908-PA 1..410 1..410 2167 97.8 Plus
Dyak\GE13179-PA 526 GE13179-PA 86..180 1..92 153 35.1 Plus

LD26477.hyp Sequence

Translation from 550 to 1782

> LD26477.hyp
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPK*

LD26477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PC 410 CG11504-PC 1..410 1..410 2124 100 Plus
CG11504-PA 410 CG11504-PA 1..410 1..410 2124 100 Plus
CG11504-PB 410 CG11504-PB 1..410 1..410 2124 100 Plus