Clone LD26546 Report

Search the DGRC for LD26546

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:265
Well:46
Vector:pOT2
Associated Gene/Transcriptl(1)G0320-RA
Protein status:LD26546.pep: gold
Preliminary Size:1360
Sequenced Size:1247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2994 2001-01-01 Release 2 assignment
CG32701 2001-11-29 Blastp of sequenced clone
CG32701 2003-01-01 Sim4 clustering to Release 3
l(1)G0320 2008-04-29 Release 5.5 accounting
l(1)G0320 2008-08-15 Release 5.9 accounting
l(1)G0320 2008-12-18 5.12 accounting

Clone Sequence Records

LD26546.complete Sequence

1247 bp (1247 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069541

> LD26546.complete
CACCGAAGCCCGTCACTTCTTCATTTTCACTCGATCGGGAAGGTTGTGTG
TGCGTGCGTTTTTCCCTCAGCCGATTTCCCAGCCAAATTTCCGTGTGTGC
GCCGCGCATTCGATTGCATTTGGAGCCCCGACGACATTATAAAACAGCCA
ACAAGATGAGGCATCTGATGTTCCTAATGCTGATGGTCCTGCCCATCGTC
ATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTATGCCGCCGAGGC
CGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGGTGCCGTTACTG
GCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCAGCAGCAGTTCG
CCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTGTACACACCTGG
CCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTTCCTGATTGGAT
TCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGGTGGAGGCCTCC
TTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAACTTCTCGGCGGT
GGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGACCGTGTCGTACA
CCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTGGACTGAACATT
GCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAACGAGGCCGTGTT
CAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCTGGATGGCGAGA
CTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCCTGCTACTGGTC
ATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGGAAGCGTGCCGC
TGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAGCACCATCGACT
ACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGAAGTCGCCGCCC
AAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAGCCGGCCAGTCC
CAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGGTCAAGCGTTCCG
CTGGCGATGATTAAGTTCAAATCCGCTCAAGACTGCACATATCCCAAACA
CCATCGAAAGCGGTAGCCATAACATCGGCTGCCGAAGGAGCAGTAACAGC
AAGATCCCACTCCCTCCCGTCATTTTCATCCTGTAGGGAGAAAAGCAAAA
AGTTTCGTAATTAATTAGTTATGTACATCAAAAAAAAAAAAAAAAAA

LD26546.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320.a 1979 l(1)G0320.a 115..1344 1..1230 6150 100 Plus
l(1)G0320-RA 1512 l(1)G0320-RA 115..1344 1..1230 6150 100 Plus
CG32700.a 3584 CG32700.a 161..1171 220..1230 5055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9443487..9444496 1229..220 5050 100 Minus
chrX 22417052 chrX 9445165..9445383 219..1 1095 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551773..9552783 1230..220 5055 100 Minus
X 23542271 X 9553452..9553670 219..1 1095 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9559871..9560881 1230..220 5055 100 Minus
X 23527363 X 9561550..9561768 219..1 1095 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:50:52 has no hits.

LD26546.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:51:55 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9445165..9445383 1..219 100   Minus
chrX 9443487..9444496 220..1229 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:40 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 156..1064 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:34 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 156..1064 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:11:06 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 156..1064 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:56 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 156..1064 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:48 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 156..1064 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:57:16 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..1229 1..1229 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:34 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..1229 1..1229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:11:06 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..1220 10..1229 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:57 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..1229 1..1229 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:48 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 81..1309 1..1229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:55 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
X 9553452..9553670 1..219 100   Minus
X 9551774..9552783 220..1229 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:55 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
X 9553452..9553670 1..219 100   Minus
X 9551774..9552783 220..1229 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:55 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
X 9553452..9553670 1..219 100   Minus
X 9551774..9552783 220..1229 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:11:06 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445807..9446816 220..1229 100 <- Minus
arm_X 9447485..9447703 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:30 Download gff for LD26546.complete
Subject Subject Range Query Range Percent Splice Strand
X 9559872..9560881 220..1229 100 <- Minus
X 9561550..9561768 1..219 100   Minus

LD26546.hyp Sequence

Translation from 2 to 1063

> LD26546.hyp
PKPVTSSFSLDREGCVCVRFSLSRFPSQISVCAPRIRLHLEPRRHYKTAN
KMRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTG
EDAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGF
TNKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYT
FLPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLISEVDEGLDGET
FFLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDY
DWVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSA
GDD*

LD26546.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-PB 302 CG32701-PB 1..302 52..353 1547 100 Plus
l(1)G0320-PA 302 CG32701-PA 1..302 52..353 1547 100 Plus

LD26546.pep Sequence

Translation from 155 to 1063

> LD26546.pep
MRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGE
DAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFT
NKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTF
LPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLISEVDEGLDGETF
FLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDYD
WVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAG
DD*

LD26546.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21794-PA 302 GF21794-PA 1..302 1..302 1548 97.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18974-PA 302 GG18974-PA 1..302 1..302 1583 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11832-PA 303 GH11832-PA 1..303 1..302 1407 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-PB 302 CG32701-PB 1..302 1..302 1547 100 Plus
l(1)G0320-PA 302 CG32701-PA 1..302 1..302 1547 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14400-PA 302 GI14400-PA 1..302 1..302 1402 91.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13128-PA 302 GL13128-PA 1..302 1..302 1471 96 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17087-PA 302 GA17087-PA 1..302 1..302 1471 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11361-PA 302 GM11361-PA 1..302 1..302 1581 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16058-PA 396 GD16058-PA 235..396 147..302 663 81 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18745-PA 302 GJ18745-PA 1..302 1..302 1416 93.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25547-PA 301 GK25547-PA 1..301 1..302 1410 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15447-PA 302 GE15447-PA 1..302 1..302 1574 99 Plus