Clone LD26552 Report

Search the DGRC for LD26552

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:265
Well:52
Vector:pOT2
Associated Gene/Transcriptade3-RB
Protein status:LD26552.pep: gold
Sequenced Size:1390

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ade3 2008-04-29 Release 5.5 accounting
ade3 2008-04-29 Picked prior to 5.5
ade3 2008-08-15 Release 5.9 accounting
ade3 2008-12-18 5.12 accounting

Clone Sequence Records

LD26552.complete Sequence

1390 bp assembled on 2007-09-25

GenBank Submission: BT030993

> LD26552.complete
AATTATGTCGCATCGCGTTCTGGTCATTGGCAGCGGCGGTCGGGAGCACG
CGATCTGCTGGAAGTTGTCGCAATCTCCGAAGGTGGCCCAAATATACGCA
CTGCCGGGTAGCCATGGCATCCAGCTGGTGGAGAAGTGCCGGAATCTGGA
TGCCAAGACCTTGGATCCTAAGGATTTCGAGGCCATTGCTAAATGGAGCA
AGGAGAACCAGATAGCCCTAGTGGTTGTGGGACCCGAAGATCCCTTGGCT
TTGGGTTTGGGCGATGTGCTGCAGAGCGCTGGAATTCCCTGCTTTGGACC
CGGCAAGCAAGGTGCCCAAATCGAGGCGGACAAGAAGTGGGCCAAGGACT
TTATGCTGCGCCATGGGATTCCCACAGCGCGTTACGAAAGTTTCACAGAC
ACCGAAAAGGCCAAGGCATTCATAAGAAGCGCTCCGTATCCAGCTCTGGT
GGTGAAAGCTGCTGGATTGGCCGCCGGAAAGGGCGTGGTGGTGGCCGCCA
ATGCGAAGGAGGCCTGCCAGGCGGTGGACGAGATCCTGGGAGATCTGAAA
TACGGTCAGGCTGGCGCCACGCTGGTGGTGGAGGAGCTACTGGAGGGCGA
AGAGGTTTCCGTTCTGGCCTTCACCGATGGCAAAAGTGTGCGTGCCATGC
TGCCAGCGCAGGATCACAAGCGACTGGGCAATGGCGATACTGGACCAAAC
ACCGGCGGCATGGGCGCCTACTGCCCTTGTCCGTTGATCAGCCAGCCAGC
ACTGGAACTGGTGCAAAAGGCCGTGCTGGAGCGGGCTGTGCAGGGTCTGA
TCAAGGAGAGGATCAACTACCAGGGTGTACTCTATGCGGGACTCATGCTG
ACACGCGATGGTCCCCGTGTGCTGGAGTTTAACTGCCGGTTTGGAGATCC
CGAGACCCAGGTGATTCTGCCGCTGCTCGAAAGCGATCTGTTCGATGTGA
TGGAGGCTTGTTGCAGCGGAAAGCTGGACAAGATTCCCCTGCAATGGCGC
AATGGAGTGAGTGCCGTTGGTGTGATCCTGGCCAGTGCTGGCTATCCGGA
GACCTCCACAAAGGGTTGCATCATATCGGGACTTCCGGCTGCCAATACAC
CCACCCAACTGGTCTTTCACAGCGGCCTTGCCGTGAATGCACAAAAGGAA
GCCCTAACCAATGGCGGTCGCGTCCTCATCGCGATCGCTCTGGACGGCAG
CTTGAAGGAGGCTGCTGCGAAGGCAACCAAATTGGCTGGCAGCATCAGTT
TTTCGGGCTCTGGAGCTCAGTACCGAACGGACATTGCCCAGAAGGCGTTC
AAAATGTAATTACAAGTGGATCACATCATGCATCAAGACTCAGTTCAAAT
AAAGCAACCAAGATTTTAAAAAAAAAAAAAAAAAAAAAAA

LD26552.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
ade3-RB 1600 ade3-RB 232..1600 1..1369 6845 100 Plus
ade3.a 4736 ade3.a 444..1748 1..1305 6525 100 Plus
ade3-RA 4576 ade3-RA 284..1588 1..1305 6525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7017482..7018134 1080..428 3250 99.8 Minus
chr2L 23010047 chr2L 7017139..7017427 1367..1079 1445 100 Minus
chr2L 23010047 chr2L 7018187..7018436 429..180 1250 100 Minus
chr2L 23010047 chr2L 7022580..7022761 182..1 910 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7018430..7019082 1080..428 3265 100 Minus
2L 23513712 2L 7018085..7018375 1369..1079 1455 100 Minus
2L 23513712 2L 7019135..7019384 429..180 1250 100 Minus
2L 23513712 2L 7023528..7023709 182..1 910 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7018430..7019082 1080..428 3265 100 Minus
2L 23513712 2L 7018085..7018375 1369..1079 1455 100 Minus
2L 23513712 2L 7019135..7019384 429..180 1250 100 Minus
2L 23513712 2L 7023528..7023709 182..1 910 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:56:57 has no hits.

LD26552.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:58:11 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7017139..7017426 1080..1367 100 <- Minus
chr2L 7018187..7018434 182..429 100 <- Minus
chr2L 7022581..7022761 1..181 100   Minus
chr2L 7017483..7018132 430..1079 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:41 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 1..1305 5..1309 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:36 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 1..1305 5..1309 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:01 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 1..1305 5..1309 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:50:55 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 1..1305 5..1309 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:40 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 1..1305 5..1309 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:56:41 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 232..1598 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:36 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 232..1598 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:01 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 232..1598 1..1367 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:50:55 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 232..1598 1..1367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:40 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
ade3-RB 190..1556 1..1367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:11 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7023529..7023709 1..181 100   Minus
2L 7018087..7018374 1080..1367 100 <- Minus
2L 7018431..7019080 430..1079 100 <- Minus
2L 7019135..7019382 182..429 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:11 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7023529..7023709 1..181 100   Minus
2L 7018087..7018374 1080..1367 100 <- Minus
2L 7018431..7019080 430..1079 100 <- Minus
2L 7019135..7019382 182..429 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:58:11 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7023529..7023709 1..181 100   Minus
2L 7018087..7018374 1080..1367 100 <- Minus
2L 7018431..7019080 430..1079 100 <- Minus
2L 7019135..7019382 182..429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:01 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7023529..7023709 1..181 100   Minus
arm_2L 7018087..7018374 1080..1367 100 <- Minus
arm_2L 7018431..7019080 430..1079 100 <- Minus
arm_2L 7019135..7019382 182..429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:42 Download gff for LD26552.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7018087..7018374 1080..1367 100 <- Minus
2L 7018431..7019080 430..1079 100 <- Minus
2L 7019135..7019382 182..429 100 <- Minus
2L 7023529..7023709 1..181 100   Minus

LD26552.hyp Sequence

Translation from 0 to 1308

> LD26552.hyp
IMSHRVLVIGSGGREHAICWKLSQSPKVAQIYALPGSHGIQLVEKCRNLD
AKTLDPKDFEAIAKWSKENQIALVVVGPEDPLALGLGDVLQSAGIPCFGP
GKQGAQIEADKKWAKDFMLRHGIPTARYESFTDTEKAKAFIRSAPYPALV
VKAAGLAAGKGVVVAANAKEACQAVDEILGDLKYGQAGATLVVEELLEGE
EVSVLAFTDGKSVRAMLPAQDHKRLGNGDTGPNTGGMGAYCPCPLISQPA
LELVQKAVLERAVQGLIKERINYQGVLYAGLMLTRDGPRVLEFNCRFGDP
ETQVILPLLESDLFDVMEACCSGKLDKIPLQWRNGVSAVGVILASAGYPE
TSTKGCIISGLPAANTPTQLVFHSGLAVNAQKEALTNGGRVLIAIALDGS
LKEAAAKATKLAGSISFSGSGAQYRTDIAQKAFKM*

LD26552.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
ade3-PB 434 CG31628-PB 1..434 2..435 2222 100 Plus
ade3-PC 1353 CG31628-PC 1..434 2..435 2218 99.8 Plus
ade3-PA 1353 CG31628-PA 1..434 2..435 2218 99.8 Plus

LD26552.pep Sequence

Translation from 4 to 1308

> LD26552.pep
MSHRVLVIGSGGREHAICWKLSQSPKVAQIYALPGSHGIQLVEKCRNLDA
KTLDPKDFEAIAKWSKENQIALVVVGPEDPLALGLGDVLQSAGIPCFGPG
KQGAQIEADKKWAKDFMLRHGIPTARYESFTDTEKAKAFIRSAPYPALVV
KAAGLAAGKGVVVAANAKEACQAVDEILGDLKYGQAGATLVVEELLEGEE
VSVLAFTDGKSVRAMLPAQDHKRLGNGDTGPNTGGMGAYCPCPLISQPAL
ELVQKAVLERAVQGLIKERINYQGVLYAGLMLTRDGPRVLEFNCRFGDPE
TQVILPLLESDLFDVMEACCSGKLDKIPLQWRNGVSAVGVILASAGYPET
STKGCIISGLPAANTPTQLVFHSGLAVNAQKEALTNGGRVLIAIALDGSL
KEAAAKATKLAGSISFSGSGAQYRTDIAQKAFKM*

LD26552.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14946-PA 1358 GF14946-PA 1..434 1..434 1969 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23557-PA 1348 GG23557-PA 1..434 1..434 2117 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13636-PA 1352 GH13636-PA 1..435 1..434 1905 85.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Gart-PB 434 CG31628-PB 1..434 1..434 2222 100 Plus
Gart-PC 1353 CG31628-PC 1..434 1..434 2218 99.8 Plus
Gart-PA 1353 CG31628-PA 1..434 1..434 2218 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11847-PA 1353 GI11847-PA 1..435 1..434 1882 84.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25777-PA 1342 GL25777-PA 1..434 1..434 2045 90.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\ade3-PA 1364 GA25439-PA 1..434 1..434 2046 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13655-PA 1353 GM13655-PA 1..434 1..434 2238 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22518-PA 1353 GD22518-PA 1..434 1..434 2253 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13961-PA 1346 GJ13961-PA 1..435 1..434 1778 82.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14862-PA 1358 GK14862-PA 1..434 1..434 1949 87.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18382-PA 1353 GE18382-PA 1..434 1..434 2129 95.4 Plus