Clone LD26647 Report

Search the DGRC for LD26647

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:266
Well:47
Vector:pOT2
Associated Gene/TranscriptCAH2-RA
Protein status:LD26647.pep: gold
Preliminary Size:1945
Sequenced Size:1826

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6906 2001-01-01 Release 2 assignment
CG6906 2002-04-04 Blastp of sequenced clone
CG6906 2003-01-01 Sim4 clustering to Release 3
CAH2 2008-04-29 Release 5.5 accounting
CAH2 2008-08-15 Release 5.9 accounting
CAH2 2008-12-18 5.12 accounting

Clone Sequence Records

LD26647.complete Sequence

1826 bp (1826 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095036

> LD26647.complete
TGAGCACGGATAGTAAGACAGTGTCTCCACTGTCAGCTTAAAACCGTTCG
AAAGCCACTAGATTTGTGTGCCCCAGTGCCGCAAATAGTTACAGTTCGTA
AATTAGTCGCGACTGGTGACAGTGCCCAGTAATTCCCGATAAGGGCAAGT
GTGTTCCGTGAAAAGTGAGTCCGCGGCAAGGTGAAACCATGAGGAGGTGT
CGCAACACCCCGTTCGCAATTGTCATTGCTCCGATCTTGATTTGTGCTTC
TTTGGTCTTGGCCCAAGATTTTGGCTACGAGGGCAGACATGGACCCGAGC
ACTGGAGCGAGGATTACGCCCGCTGCAGTGGAAAGCACCAGAGTCCCATA
AACATCGACCAGGTCAGCGCCGTGGAGAAGAAGTTTCCCAAGCTGGAGTT
TTTCAATTTCAAAGTGGTGCCCGACAATCTTCAAATGACGAACAACGGTC
ACACGGTGCTGGTGAAGATGAGCTACAACGAGGACGAGATCCCAAGTGTG
CGTGGTGGTCCTTTGGCGGAGAAAACTCCTCTGGGCTATCAGTTCGAACA
GTTCCACTTTCACTGGGGCGAGAACGATACGATTGGCAGTGAGGATTTGA
TCAACAATCGTGCCTATCCCGCCGAGTTGCACGTGGTATTGCGGAATCTA
GAGTATCCGGACTTTGCCAGCGCCCTGGACAAGGATCACGGCATCGCCGT
GATGGCCTTCTTCTTTCAGGTGGGCGACAAATCAACTGGTGGCTATGAGG
GCTTCACCAACTTGCTCTCCCAGATTGACCGCAAAGGCAAGAGCGTTAAT
ATGACCAATCCACTTCCACTGGGCGAGTACATCTCGAAGTCCGTGGAGAG
TTACTTTAGCTACACTGGTTCTCTGACCACACCGCCTTGCAGTGAGGAGG
TCACCTGGATTGATTTCACAACGCCCATTGACATCACGGAGAAGCAGTTG
AATGCCTTCCGTCTGCTGACAGCCAACGATGATCATCTGAAGAACAATTT
CCGACCCATCCAGCCGCTGAACGATCGCACCTTGTACAAGAACTACATAG
AAATTCCGATTCACAACATGGGCTCGATTCCACTCGTCGATGCGGAAAAT
GCGGCTGGCAAGTGGAGGGCACAAGCCGCAGCAGTGCTGTTGCCCCTCGT
TGTCCTCGCTGCATTGTCAAGGACCTCCATTTTCCGGGGTTTTTAATTAG
AGTTCTGCGGTGGTAAATCGAAGGTTAAATCGTTAAATGCCTAGCTGGCG
CTTAGGCGTCCAATTAAGCGCTGTAATTTACATTTTCCGCTCTTGTTCGC
CGTCGCTGTTTGTTGTTCAAACACGAGTCCCGGTAATTTCCTTCGGCAAG
GACTCAACTGCCGTCAGGACATCCATTCATATCCACACACACACACATAT
ATATATATATATAAATATATATATATGGGCAAACAAACAGGCGGACGGTG
GGCGAAATTATTAAACCCCAAATGGGCGGAGCTTCAGCTGGCACGAAACC
CTTACTCATCAATTATGCAGCACCTCGCACAGCGACTGTCAACCGAATCG
TACCCCGTATCCGTACCCGTTCCCGTACCCGTACCCGTTCCCGTACCCGT
AACCGTATCCGTATCCGTATCCCCATATTCCCTTCCGTCCGAGGAGGCCC
GCCAGTGCGAGGGGAACCCCCTGGATGTCCTCGCTATTGCACATTGTGAT
TTTAAATGCTTGGCACAAGCAGAGCTTTTTATTCGTGTACCTTAGATTTA
AGTTTTGTAAACATAAAACCGTAATAAATTTTATTGTTTAACATCTAAAA
AAACAAAAAAAAAAAAAAAAAAAAAA

LD26647.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1928 CAH2-RA 90..1885 1..1796 8980 100 Plus
CAH2.a 1753 CAH2.a 196..1745 247..1796 7750 100 Plus
CAH2.b 1627 CAH2.b 70..1619 247..1796 7750 100 Plus
CAH2.a 1753 CAH2.a 32..195 1..164 820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12173248..12174100 944..1796 4205 99.5 Plus
chr3L 24539361 chr3L 12172423..12172899 246..722 2370 99.8 Plus
chr3L 24539361 chr3L 12170658..12170903 1..246 1230 100 Plus
chr3L 24539361 chr3L 12172956..12173185 718..947 1075 97.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12182495..12183347 944..1796 4265 100 Plus
3L 28110227 3L 12181675..12182151 246..722 2385 100 Plus
3L 28110227 3L 12179910..12180155 1..246 1230 100 Plus
3L 28110227 3L 12182208..12182437 718..947 1150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12175595..12176447 944..1796 4265 100 Plus
3L 28103327 3L 12174775..12175251 246..722 2385 100 Plus
3L 28103327 3L 12173010..12173255 1..246 1230 100 Plus
3L 28103327 3L 12175308..12175537 718..947 1150 100 Plus
X 23527363 X 14217622..14217665 1426..1383 205 97.7 Minus
X 23527363 X 20604086..20604128 1426..1384 200 97.6 Minus
X 23527363 X 20604083..20604126 1427..1384 190 95.4 Minus
Blast to na_te.dros performed on 2019-03-16 04:06:23 has no hits.

LD26647.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:07:07 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12170658..12170903 1..246 100 -> Plus
chr3L 12172424..12172896 247..719 99 -> Plus
chr3L 12172958..12173185 720..947 97 -> Plus
chr3L 12173252..12173846 948..1542 94 == Plus
chr3L 12173927..12174107 1623..1804 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:42 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 189..1196 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:17:19 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 189..1196 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:46 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 189..1196 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:48 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 189..1196 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:26:54 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 189..1196 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:08 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 32..1833 1..1804 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:17:19 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 32..1833 1..1804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:46 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 35..1830 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:48 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 32..1833 1..1804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:26:54 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 35..1830 1..1796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:07 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12182210..12182437 720..947 100 -> Plus
3L 12179910..12180155 1..246 100 -> Plus
3L 12181676..12182148 247..719 100 -> Plus
3L 12182499..12183353 948..1804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:07 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12182210..12182437 720..947 100 -> Plus
3L 12179910..12180155 1..246 100 -> Plus
3L 12181676..12182148 247..719 100 -> Plus
3L 12182499..12183353 948..1804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:07 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12182210..12182437 720..947 100 -> Plus
3L 12179910..12180155 1..246 100 -> Plus
3L 12181676..12182148 247..719 100 -> Plus
3L 12182499..12183353 948..1804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:46 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173010..12173255 1..246 100 -> Plus
arm_3L 12174776..12175248 247..719 100 -> Plus
arm_3L 12175310..12175537 720..947 100 -> Plus
arm_3L 12175599..12176453 948..1804 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:19 Download gff for LD26647.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12173010..12173255 1..246 100 -> Plus
3L 12174776..12175248 247..719 100 -> Plus
3L 12175310..12175537 720..947 100 -> Plus
3L 12175599..12176453 948..1804 99   Plus

LD26647.pep Sequence

Translation from 188 to 1195

> LD26647.pep
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGF*

LD26647.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24805-PA 336 GF24805-PA 7..336 9..335 1373 77.3 Plus
Dana\GF24807-PA 329 GF24807-PA 15..295 11..291 1096 69.8 Plus
Dana\GF14257-PA 270 GF14257-PA 1..264 24..282 423 38.2 Plus
Dana\GF22952-PA 311 GF22952-PA 12..284 16..283 419 34.9 Plus
Dana\GF17859-PA 294 GF17859-PA 37..263 47..282 319 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15564-PA 335 GG15564-PA 1..335 1..335 1767 97.3 Plus
Dere\GG12140-PA 311 GG12140-PA 12..284 16..283 426 35.6 Plus
Dere\GG23881-PA 270 GG23881-PA 1..264 24..282 416 36.4 Plus
Dere\GG17412-PA 304 GG17412-PA 8..284 16..299 351 33.4 Plus
Dere\GG12522-PA 303 GG12522-PA 16..294 16..293 327 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16154-PA 337 GH16154-PA 6..326 11..326 964 56 Plus
Dgri\GH18947-PA 310 GH18947-PA 11..283 16..283 427 36 Plus
Dgri\GH11114-PA 270 GH11114-PA 1..264 24..282 404 36.4 Plus
Dgri\GH18013-PA 286 GH18013-PA 10..285 11..287 332 29.9 Plus
Dgri\GH14247-PA 300 GH14247-PA 44..269 47..282 330 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-PA 335 CG6906-PA 1..335 1..335 1776 100 Plus
CAH2-PB 253 CG6906-PB 1..253 83..335 1333 100 Plus
caix-PA 311 CG6074-PA 12..284 16..283 413 34.9 Plus
CAH1-PA 270 CG7820-PA 1..264 24..282 387 34.9 Plus
CG3940-PC 304 CG3940-PC 3..284 11..299 334 31.9 Plus
CG3940-PB 304 CG3940-PB 3..284 11..299 334 31.9 Plus
CG3940-PA 304 CG3940-PA 3..284 11..299 334 31.9 Plus
CG5379-PB 303 CG5379-PB 27..292 27..291 330 33.3 Plus
CG5379-PA 303 CG5379-PA 27..292 27..291 330 33.3 Plus
CG18672-PC 286 CG18672-PC 41..280 47..283 325 33.6 Plus
CG18673-PC 302 CG18673-PC 58..302 47..288 323 32.1 Plus
CG18672-PB 284 CG18672-PB 41..278 47..283 320 34.2 Plus
CG3669-PB 298 CG3669-PB 45..284 47..283 314 32 Plus
CG18672-PD 281 CG18672-PD 41..275 47..283 313 33.6 Plus
CG32698-PD 327 CG32698-PD 32..296 30..285 309 30.9 Plus
CG32698-PB 327 CG32698-PB 32..296 30..285 309 30.9 Plus
CG32698-PC 327 CG32698-PC 32..296 30..285 309 30.9 Plus
CG32698-PA 327 CG32698-PA 32..296 30..285 309 30.9 Plus
CG10899-PA 279 CG10899-PA 19..276 28..285 300 30.6 Plus
CG9235-PA 332 CG9235-PA 80..326 26..285 292 28.1 Plus
CG11284-PE 250 CG11284-PE 4..230 51..275 267 32.3 Plus
CG11284-PD 250 CG11284-PD 4..230 51..275 267 32.3 Plus
CG11284-PC 250 CG11284-PC 4..230 51..275 267 32.3 Plus
CG11284-PB 250 CG11284-PB 4..230 51..275 267 32.3 Plus
CG11284-PA 250 CG11284-PA 4..230 51..275 267 32.3 Plus
CG1402-PC 333 CG1402-PC 12..298 4..285 266 27 Plus
CG1402-PB 333 CG1402-PB 12..298 4..285 266 27 Plus
CG12309-PA 527 CG12309-PA 83..340 28..285 254 25.8 Plus
CG10899-PC 200 CG10899-PC 24..197 117..285 237 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12426-PA 330 GI12426-PA 13..315 16..327 960 56.8 Plus
Dmoj\GI23275-PA 310 GI23275-PA 9..283 14..283 414 35 Plus
Dmoj\GI18237-PA 270 GI18237-PA 1..264 24..282 395 35.7 Plus
Dmoj\GI23140-PA 301 GI23140-PA 1..266 12..282 323 31.6 Plus
Dmoj\GI23612-PA 410 GI23612-PA 65..302 48..280 321 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25159-PA 335 GL25159-PA 1..335 1..335 1128 64.7 Plus
Dper\GL21230-PA 270 GL21230-PA 1..264 24..282 417 36.4 Plus
Dper\GL23614-PA 305 GL23614-PA 12..278 16..283 387 33.1 Plus
Dper\GL17059-PA 345 GL17059-PA 87..340 19..286 352 31.1 Plus
Dper\GL27210-PA 279 GL27210-PA 4..244 12..282 343 32.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19947-PA 335 GA19947-PA 1..335 1..335 1121 64.1 Plus
Dpse\GA19339-PA 311 GA19339-PA 12..284 16..283 423 34.5 Plus
Dpse\GA20608-PA 270 GA20608-PA 1..264 24..282 417 36.4 Plus
Dpse\GA17790-PA 305 GA17790-PA 4..270 12..282 386 34.3 Plus
Dpse\GA21631-PA 345 GA21631-PA 87..340 19..286 353 31.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25332-PA 335 GM25332-PA 1..335 1..335 1753 96.7 Plus
Dsec\GM10133-PA 311 GM10133-PA 12..284 16..283 422 35.3 Plus
Dsec\GM15222-PA 270 GM15222-PA 1..264 24..282 411 36 Plus
Dsec\GM23862-PA 304 GM23862-PA 44..284 47..299 331 34.2 Plus
Dsec\GM23454-PA 279 GM23454-PA 19..276 28..285 318 31.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14364-PA 335 GD14364-PA 1..335 1..335 1777 98.2 Plus
Dsim\GD18095-PA 311 GD18095-PA 12..284 16..283 424 35.3 Plus
Dsim\CAH1-PA 270 GD23924-PA 1..264 24..282 411 36 Plus
Dsim\GD18670-PA 304 GD18670-PA 4..284 11..299 335 33 Plus
Dsim\GD21568-PA 299 GD21568-PA 45..285 46..283 312 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12322-PA 331 GJ12322-PA 8..331 13..335 1024 58.6 Plus
Dvir\GJ24133-PA 310 GJ24133-PA 11..283 16..283 426 35.6 Plus
Dvir\GJ18144-PA 270 GJ18144-PA 1..264 24..282 406 36.4 Plus
Dvir\GJ10442-PA 324 GJ10442-PA 65..290 47..282 326 33.3 Plus
Dvir\GJ22838-PA 297 GJ22838-PA 35..287 36..284 325 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13282-PA 300 GK13282-PA 3..296 17..308 1031 65 Plus
Dwil\GK24229-PA 270 GK24229-PA 1..264 24..282 414 36.4 Plus
Dwil\GK12035-PA 312 GK12035-PA 16..285 19..283 395 33.1 Plus
Dwil\GK25359-PA 327 GK25359-PA 11..296 9..285 328 29.4 Plus
Dwil\GK12982-PA 297 GK12982-PA 34..287 35..284 309 32.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21890-PA 335 GE21890-PA 1..335 1..335 1631 93.7 Plus
Dyak\GE10587-PA 311 GE10587-PA 12..284 16..283 422 35.3 Plus
Dyak\GE18682-PA 270 GE18682-PA 1..264 24..282 412 36 Plus
Dyak\GE26013-PA 304 GE26013-PA 4..269 11..282 336 33.6 Plus
Dyak\GE10930-PA 302 GE10930-PA 58..302 47..288 319 32.1 Plus

LD26647.hyp Sequence

Translation from 188 to 1195

> LD26647.hyp
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGF*

LD26647.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-PA 335 CG6906-PA 1..335 1..335 1776 100 Plus
CAH2-PB 253 CG6906-PB 1..253 83..335 1333 100 Plus
CG6074-PA 311 CG6074-PA 12..284 16..283 413 34.9 Plus
CAH1-PA 270 CG7820-PA 1..264 24..282 387 34.9 Plus
CG3940-PC 304 CG3940-PC 3..284 11..299 334 31.9 Plus