Clone LD26657 Report

Search the DGRC for LD26657

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:266
Well:57
Vector:pOT2
Associated Gene/Transcriptexu-RA
Protein status:LD26657.pep: gold
Preliminary Size:2081
Sequenced Size:2007

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8994 2001-01-01 Release 2 assignment
CG8994 2001-07-04 Blastp of sequenced clone
CG8994 2003-01-01 Sim4 clustering to Release 3
exu 2008-04-29 Release 5.5 accounting
exu 2008-08-15 Release 5.9 accounting
exu 2008-12-18 5.12 accounting

Clone Sequence Records

LD26657.complete Sequence

2007 bp (2007 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051739

> LD26657.complete
TCACTTCATATCGAAAATCTAGTGAAAGCGGTTCGCGTTTTGCAAAGGAA
ATCGGTTCCTTAAAAAAAAAAAAAATTCTAGTGACTCAGCTAATTTCGTT
ATCCGAATTTTCTAGATTGCTTTTCGCAGATCATATAAGAAAATGGTTGC
CGATAACATCGATGCCGGAGTGGCCATTGCCGTCGCCGATCAATCCTCGT
CGCCCGTGGGCGATAAAGTTGAGCTGCCGGCCGGTAATTATATCCTGGTG
GGCGTGGATATCGACACCACTGGACGTCGTCTAATGGATGAGATTGTCCA
GCTGGCCGCTTATACACCCACCGACCACTTCGAGCAGTACATCATGCCAT
ATATGAATCTGAATCCAGCTGCTCGCCAGCGTCATCAAGTTCGTGTTATT
TCGATTGGCTTTTATCGTATGCTGAAGTCGATGCAGACTTATAAGATCAT
TAAATCCAAGTCTGAGATCGCTGCCCTCAAGGACTTCCTCAACTGGCTTG
AGCAACTGAAGACCAAGGCGGGTCCCAGCTCGGACGGGATTGTGCTTATC
TATCATGAAGAGCGCAAGTTCATTCCCTACATGATCCTGGAGTCGTTGAA
GAAGTACGGCCTGTTGGAGCGCTTCACCGCGTCGGTGAAGTCGTTTGCAA
ACAGCATCAATCTGGCCAAGGCTTCCATTGGCGATGCCAACATAAAGAAC
TACAGTCTGCGAAAGCTTTCCAAGATCTTGTCCACGACCAAGGAGGAAGA
CGCGGCTTGCTCTGCGTCCACATCTGGATCTGGATCTGGCTTGGGATCTG
GATCTAGTATGGTGTCCGATTCGGTATCGATATCCCCCAGGGACAGTACC
GTGACCAATGGTGACGATAAGCAATCTAGCAAGAACGCCGTTCAGGGTAA
GCGGGAACTGTTTGATGGCAATGCCAGTGTTCGTGCCAAATTGGCCTTTG
ATGTGGCCCTTCAGCTGAGCAACTCCGACGGCAAGCCGGAACCAAAAAGC
TCGGAGGCATTGGAGAATATGTTTAATGCCATACGTCCGTTTGCCAAGTT
GGTGGTGTCCGATGTCCTGGAGCTGGATATCCAGATCGAAAATTTGGAGC
GTCAAAACTCCTTCCGTCCGGTGTTCCTGAACTACTTCAAGACCACTCTG
TACCATCGTGTGCGTGCCGTAAAGTTCCGCATTGTGCTGGCCGAGAATGG
GTTCGATTTGAACACGCTAAGTGCCATCTGGGCAGAGAAAAACATCGAGG
GCCTGGACATAGCCCTGCAGTCAATTGGCCGGCTAAAGAGCAAGGACAAG
GCGGAGCTGCTCGAGCTTCTGGACAGCTATTTCGATCCCAAGAAGACCAC
GGTGAAGCCGGTTGTCAAGGGTAACAGCAACAATAATAACAATTATCGTC
GTCGCAATCGACGCGGCGGCCGCCAATCGGTGAAGGACGCTAGGCCATCC
AGCTCCCCATCGGCTAGCACCGAGTTTGGAGCAGGAGGTGACAAGTCGCG
CAGCGTTTCCTCGTTGCCCGACTCTACTACCAAGACTCCCTCGCCAAACA
AGCCGCGTATGCACCGTAAGCGCAACTCGCGTCAAAGCTTGGGTGCAACC
CCCAATGGACTCAAGGTTGCTGCTGAAATATCCTCCTCAGGCGTGTCTGA
GCTCAACAATAGCGCTCCACCTGCCGTAACCATAAGCCCAGTCGTGGCAC
AACCCTCACCGACACCGGTGGCCATCACGGCCTCCAACTAAAATCCAGTT
CTGGTGGATCCGTAAAGTAAATATCTTATATTGAGATACTTCTGCCATTT
GCTTTGTAGATAACGTAGTTAACGAGGGGTAAGCCTTCATGTAGATTGTT
GATTAATTTTATGAATTGCGTACACTTGCTTGTATTTTTAATGAATTTTA
TGCATCAAATATATTGATAAAAATGTAGCCTTTTTTAGCTAAATGTAAAA
GGTTTTATTACATATTTTCAATATAAACTCACAACGCTTAAAAAAAAAAA
AAAAAAA

LD26657.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
exu-RB 2026 exu-RB 20..2008 1..1991 9900 99.8 Plus
exu-RA 2188 exu-RA 293..2170 114..1991 9390 100 Plus
exu.a 2354 exu.a 459..2336 114..1991 9390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16555065..16556598 1989..444 7470 99 Minus
chr2R 21145070 chr2R 16556902..16557191 292..1 1395 99.3 Minus
chr2R 21145070 chr2R 16556680..16556834 445..291 775 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20668350..20669897 1991..444 7740 100 Minus
2R 25286936 2R 20670201..20670490 292..1 1395 99.3 Minus
2R 25286936 2R 20669979..20670133 445..291 775 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20669549..20671096 1991..444 7740 100 Minus
2R 25260384 2R 20671400..20671689 292..1 1405 99.3 Minus
2R 25260384 2R 20671178..20671332 445..291 775 100 Minus
Blast to na_te.dros performed 2019-03-15 22:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3820..3908 1974..1880 118 63.2 Minus

LD26657.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:26:24 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16556902..16557191 1..292 99   Minus
chr2R 16555065..16556596 446..1989 99 <- Minus
chr2R 16556680..16556832 293..445 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:43 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 1..1599 143..1741 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:00 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 1..1599 143..1741 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:19:00 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 1..1599 143..1741 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:46 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 1..1599 143..1741 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:55 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 1..1599 143..1741 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:37 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 1..1987 1..1989 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:00 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 1..1987 1..1989 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:19:00 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 2..1988 1..1989 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:46 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 1..1987 1..1989 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:55 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 2..1988 1..1989 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:24 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20668352..20669895 446..1989 100 <- Minus
2R 20669979..20670131 293..445 100 <- Minus
2R 20670201..20670490 1..292 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:24 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20668352..20669895 446..1989 100 <- Minus
2R 20669979..20670131 293..445 100 <- Minus
2R 20670201..20670490 1..292 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:26:24 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20668352..20669895 446..1989 100 <- Minus
2R 20669979..20670131 293..445 100 <- Minus
2R 20670201..20670490 1..292 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:19:00 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16555857..16557400 446..1989 100 <- Minus
arm_2R 16557484..16557636 293..445 100 <- Minus
arm_2R 16557706..16557995 1..292 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:12 Download gff for LD26657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20669551..20671094 446..1989 100 <- Minus
2R 20671178..20671330 293..445 100 <- Minus
2R 20671400..20671689 1..292 99   Minus

LD26657.pep Sequence

Translation from 142 to 1740

> LD26657.pep
MVADNIDAGVAIAVADQSSSPVGDKVELPAGNYILVGVDIDTTGRRLMDE
IVQLAAYTPTDHFEQYIMPYMNLNPAARQRHQVRVISIGFYRMLKSMQTY
KIIKSKSEIAALKDFLNWLEQLKTKAGPSSDGIVLIYHEERKFIPYMILE
SLKKYGLLERFTASVKSFANSINLAKASIGDANIKNYSLRKLSKILSTTK
EEDAACSASTSGSGSGLGSGSSMVSDSVSISPRDSTVTNGDDKQSSKNAV
QGKRELFDGNASVRAKLAFDVALQLSNSDGKPEPKSSEALENMFNAIRPF
AKLVVSDVLELDIQIENLERQNSFRPVFLNYFKTTLYHRVRAVKFRIVLA
ENGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELLDSYFDPK
KTTVKPVVKGNSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGD
KSRSVSSLPDSTTKTPSPNKPRMHRKRNSRQSLGATPNGLKVAAEISSSG
VSELNNSAPPAVTISPVVAQPSPTPVAITASN*

LD26657.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12748-PA 508 GF12748-PA 1..508 1..532 1799 71.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20837-PA 522 GG20837-PA 1..522 1..532 2213 86.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19889-PA 474 GH19889-PA 1..443 1..483 1366 60.5 Plus
Dgri\GH25272-PA 441 GH25272-PA 1..439 1..479 1358 60.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
exu-PD 532 CG8994-PD 1..532 1..532 2660 100 Plus
exu-PC 532 CG8994-PC 1..532 1..532 2660 100 Plus
exu-PB 532 CG8994-PB 1..532 1..532 2660 100 Plus
exu-PA 532 CG8994-PA 1..532 1..532 2660 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19844-PA 494 GI19844-PA 1..491 1..527 1546 61.8 Plus
Dmoj\GI10874-PA 454 GI10874-PA 24..337 32..406 711 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17430-PA 497 GL17430-PA 1..497 1..532 1501 57.7 Plus
Dper\exu2-PA 437 GL19898-PA 4..389 15..464 746 42.7 Plus
Dper\GL19899-PA 154 GL19899-PA 12..141 15..145 524 74.8 Plus
Dper\GL19900-PA 306 GL19900-PA 1..258 174..464 501 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\exu1-PA 495 GA21461-PA 1..495 1..532 1502 58.1 Plus
Dpse\exu2-PA 480 GA28347-PA 22..430 25..464 1108 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19766-PA 533 GM19766-PA 1..533 1..532 2400 91.7 Plus
Dsec\GM15046-PA 149 GM15046-PA 1..102 1..102 516 94.1 Plus
Dsec\GM13550-PA 83 GM13550-PA 1..83 450..532 381 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25256-PA 533 GD25256-PA 1..533 1..532 2407 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\exu-PA 486 GJ18765-PA 1..485 1..529 1578 62.5 Plus
Dvir\GJ19481-PA 448 GJ19481-PA 20..402 29..488 825 41 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21418-PA 532 GK21418-PA 1..532 1..532 1536 63.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13776-PA 525 GE13776-PA 1..525 1..532 2219 87.2 Plus

LD26657.hyp Sequence

Translation from 142 to 1740

> LD26657.hyp
MVADNIDAGVAIAVADQSSSPVGDKVELPAGNYILVGVDIDTTGRRLMDE
IVQLAAYTPTDHFEQYIMPYMNLNPAARQRHQVRVISIGFYRMLKSMQTY
KIIKSKSEIAALKDFLNWLEQLKTKAGPSSDGIVLIYHEERKFIPYMILE
SLKKYGLLERFTASVKSFANSINLAKASIGDANIKNYSLRKLSKILSTTK
EEDAACSASTSGSGSGLGSGSSMVSDSVSISPRDSTVTNGDDKQSSKNAV
QGKRELFDGNASVRAKLAFDVALQLSNSDGKPEPKSSEALENMFNAIRPF
AKLVVSDVLELDIQIENLERQNSFRPVFLNYFKTTLYHRVRAVKFRIVLA
ENGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELLDSYFDPK
KTTVKPVVKGNSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGD
KSRSVSSLPDSTTKTPSPNKPRMHRKRNSRQSLGATPNGLKVAAEISSSG
VSELNNSAPPAVTISPVVAQPSPTPVAITASN*

LD26657.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
exu-PD 532 CG8994-PD 1..532 1..532 2660 100 Plus
exu-PC 532 CG8994-PC 1..532 1..532 2660 100 Plus
exu-PB 532 CG8994-PB 1..532 1..532 2660 100 Plus
exu-PA 532 CG8994-PA 1..532 1..532 2660 100 Plus