Clone LD26673 Report

Search the DGRC for LD26673

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:266
Well:73
Vector:pOT2
Associated Gene/TranscriptCG14033-RA
Protein status:LD26673.pep: validated full length
Preliminary Size:1698
Sequenced Size:1544

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14033 2001-09-19 Blastp of sequenced clone
CG14033 2003-01-01 Sim4 clustering to Release 3
CG14033 2008-04-29 Release 5.5 accounting
CG14033 2008-08-15 Release 5.9 accounting
CG14033 2008-12-18 5.12 accounting

Clone Sequence Records

LD26673.complete Sequence

1544 bp (1544 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060378

> LD26673.complete
AAGCAATATAATATTTGTTAGCTGAAAGTGCCTTGCTAAAATTTGACTTT
CTAACTCCTCTTAGTTTCGAATATTTTCCAGTGCAACCACGAAGTTAACC
GAAGCATTGATAAAGCCCATGTCTATGGCTATCGACTATCGCTAATTGAT
TGAGTGCCTTGCACTTGTCGACTCGAAACCCGCAGACCAAACGACGTAAT
TCCCCCGACGCGTCTAATATTTTCGCCACTTTGGTGTTGTGTTGTGTTGT
GCCTTACACTCTCTGGCAGTTACATAAGCCATCTATCAAAGATTGCAAAT
TGCTGGGTGGAAAACTCGCGGCTCTTGTGTTCGACACATTTCCAAGAACT
CAAAAGCAAAACAAAACACAAACGTGACAATCCATGTGGGTGCAGCCAAA
GAACTGCGACCAGGGGAACTGATTTCGTATGGGCAGAACATGGCGACAAT
AAGCAAAACCCAGGCACAAAGTGGAGCACGTGCAAATTGGCTATCAATCA
ATATGCATACGGGTAGGAAAATGTACTGCGATGATATAGTTCGCATCGCT
TCAAAAGATTCGCAATTACGTAGAAATAAAAGCAAATGCCGACTGCATGG
CAAACGAATTGAATGGCTCCCAGCCAAATGGCAAAAATGTTAGGCCTCTA
TGACACTAGGTCGAAAACATAGTAGGCTATTCTAATGTAAATTCAAACAC
TTCCATATAGTAACATATTTTTTAATAACATAAAATGAAGAAAATTGATG
AACAGAAGCAGCGCAGTCAAAGGATGAGCTAAAGATGCCAGCTTGCAGGA
ACACCATGAGCAGTCAGGAGCGCACGCAGAACATCAAGCGCTAGATAATG
GAGGATGAATTGACCTTGTGCGAGGTCAATACCCTTTCAATCGATTATGA
GGCGGCCGGCAAATGACAGTTTAACAGCCGCCACGGAACTAGCTGATCAA
TCCATTATTGACGATGTTTTTGGAGAAGACATCCTGATGAAAGACTTGCA
GCGTAAGAACACCGTGCAGCCCACTTGCTCAACAACGACATCGTATCTTG
TCCCATTTGCTTTGAGAAAATGAAGCGCGGTACCATTATGGTGTGCTTGG
AACCGCCATCGTTTACTTCAAAGGACTTGGACACCCGTTTCTCCTCCTCG
GGATCTTCCACATCACGCTGCACCAAATCGAAATCAAATTCATCAAAGCG
AATTCTTCGCAGCTCCGGTTACACAGAGCTGAACAGCAACTCGACTACTC
TGCTGTCCAGCGAGGACGAACTTACTCCGCGTCAGCGCCTCTAGTGCAAT
CTCTTCAAACAGACCGTCGGCTGTCCCAGATGTGGCCTGGAGTTCAAGGG
CCACCAGCTGAAGGCGCATCAATCTCTCTGCCAGGGTCGCAAGAAGCACT
AGGACGGCACCTTATACGAACCATACATTAAATAAGTTTTTCACAATTTT
TCACACAGTAAATTTTCTTCATGTTATCAAAAGTGTGTTACAAGCAAAAT
ATATAAAACAACTGATTGTAAAGTCAAAAAAAAAAAAAAAAAAA

LD26673.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14033-RA 1533 CG14033-RA 1..1527 1..1527 7635 100 Plus
tkv-RC 3000 tkv-RC 18..271 1527..1274 1270 100 Minus
CG9203-RA 2382 CG9203-RA 2129..2295 1239..1405 415 83.2 Plus
CG9203-RA 2382 CG9203-RA 1573..1691 782..900 355 86.5 Plus
CG9203-RA 2382 CG9203-RA 1700..1834 897..1032 355 85.2 Plus
CG9203-RA 2382 CG9203-RA 2007..2090 1144..1227 285 89.2 Plus
CG9203-RA 2382 CG9203-RA 1855..1899 1034..1078 210 97.7 Plus
CG9203-RA 2382 CG9203-RA 1931..1963 1083..1115 150 96.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5241807..5243331 1..1525 7625 100 Plus
chrX 22417052 chrX 15363300..15363561 1032..782 525 81.7 Minus
chrX 22417052 chrX 15362839..15363005 1405..1239 415 83.2 Minus
chrX 22417052 chrX 15363044..15363127 1227..1144 270 88.1 Minus
chrX 22417052 chrX 15363235..15363279 1078..1034 210 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5242707..5244233 1..1527 7635 100 Plus
X 23542271 X 15473352..15473613 1032..782 525 81.7 Minus
X 23542271 X 15472891..15473057 1405..1239 415 83.2 Minus
X 23542271 X 15473096..15473179 1227..1144 285 89.3 Minus
X 23542271 X 15473287..15473331 1078..1034 210 97.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5242707..5244233 1..1527 7635 100 Plus
X 23527363 X 15480989..15481155 1405..1239 415 83.2 Minus
X 23527363 X 15481450..15481584 1032..897 355 85.2 Minus
X 23527363 X 15481593..15481711 900..782 355 86.5 Minus
X 23527363 X 15481194..15481277 1227..1144 285 89.2 Minus
X 23527363 X 15481385..15481429 1078..1034 210 97.7 Minus
X 23527363 X 15481321..15481353 1115..1083 150 96.9 Minus
Blast to na_te.dros performed 2019-03-16 00:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 42..95 691..743 114 70.4 Plus

LD26673.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:56:42 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5241807..5243331 1..1525 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:44 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1..225 1070..1294 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 20:02:43 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 06:59:50 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:33:14 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1..225 1070..1294 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 04:17:11 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:51:07 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1..1525 1..1525 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:02:43 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RC 20..277 1268..1525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:50 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RC 1..166 1268..1433 98   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:33:14 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1..1525 1..1525 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:17:11 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
tkv-RC 1..166 1268..1433 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:42 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5242707..5244231 1..1525 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:42 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5242707..5244231 1..1525 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:42 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5242707..5244231 1..1525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:50 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5242707..5244231 1..1525 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:10:02 Download gff for LD26673.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5242707..5244231 1..1525 100   Plus

LD26673.pep Sequence

Translation from 1069 to 1293

> LD26673.pep
MKRGTIMVCLEPPSFTSKDLDTRFSSSGSSTSRCTKSKSNSSKRILRSSG
YTELNSNSTTLLSSEDELTPRQRL*

LD26673.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
mh-PA 724 CG9203-PA 606..687 6..73 180 58.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19514-PA 133 GM19514-PA 14..96 5..73 159 62.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24499-PA 237 GD24499-PA 119..200 5..73 139 55.4 Plus

LD26673.hyp Sequence

Translation from 1069 to 1293

> LD26673.hyp
MKRGTIMVCLEPPSFTSKDLDTRFSSSGSSTSRCTKSKSNSSKRILRSSG
YTELNSNSTTLLSSEDELTPRQRL*

LD26673.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-PA 724 CG9203-PA 606..687 6..73 180 58.5 Plus