Clone LD26737 Report

Search the DGRC for LD26737

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:267
Well:37
Vector:pOT2
Associated Gene/TranscriptCG4407-RA
Protein status:LD26737.pep: gold
Preliminary Size:1466
Sequenced Size:1322

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4407 2001-01-01 Release 2 assignment
CG4407 2001-07-04 Blastp of sequenced clone
CG4407 2003-01-01 Sim4 clustering to Release 3
CG4407 2008-04-29 Release 5.5 accounting
CG4407 2008-08-15 Release 5.9 accounting
CG4407 2008-12-18 5.12 accounting

Clone Sequence Records

LD26737.complete Sequence

1322 bp (1322 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051741

> LD26737.complete
AAGACGAAAAAAGGAAGGAAAATCACTGGCGCGGAATAACAATTAACAAA
ATGGAATAATTGCATTGCTGTCGCCGTAACTCATCAGTTAAATGTGCGCC
AGTAAACAGTCGATGCAGCAACGAAACACATGAGCTATTGGCGTGTGACG
TCATCGTTTTTGCTAGCCAGGGCACGGCCACGCCTCCCACAAACATTACG
CCCACTGAGCACCATGAACGAATGCCGGAAGAACATCACAAACATCACAA
ACATTACAGCGAACAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAG
CATTTGTTTCTAGAGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAA
GGATGTGGCAAAGGGACAGGATATATCAAATCCAATGGAACTAACAGCCG
AGGATCGACTGGCCATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTC
GCCGAAACCCTGCAAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAA
CGGCGGCAAGGATTGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGC
GCCAGGAGAACATCTCCAGCGGCGACATTCCCATGCTGTACATTAAATCC
GGCGATTCGTTTCCGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAA
CTACCGCGTCCAGTTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCA
CCCACATGTCGTCGGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGC
CGCAACACGGATCCCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGA
CAACGACTGGCCGCCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCT
ACCACGACGTCTGGCACTACATCCACTTGAACTCGGTGCCCTATTGCAGC
CTGTACGATCGGGGCTACACCTCGATCGGGAATCGTGCGAACACAGTGCC
TAATCCGCACCTCCGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATT
CCGATGCCGTCTGCTCCTGCGATCTGGGTGGCTATCGGCCCGCCTGGGAG
CTCCAGGATGCCACCATGGAGCGTGCTGGTCGCCTGCCCAGGAAGTAGGA
TTCCATTTGCGTGGCTATAGTGTAATTGAATAGCTTAAACTCCAGTTAGT
CACGAAACTTTATATAGCTGTGTATATATATTAACGTGTGATCTGGATTT
CGGTAAACAAACTTAATTTAGTAAAATTTTGTACGACCTAAGGTATGCCG
CTGAATAAATGTGGCCTCTGTTAGCAGGCCACTTAAGCAGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

LD26737.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-RA 1425 CG4407-RA 122..1413 1..1292 6460 100 Plus
CG4407-RB 1339 CG4407-RB 177..1327 142..1292 5755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12793243..12793894 792..141 3260 100 Minus
chrX 22417052 chrX 12792280..12792780 1291..791 2490 99.8 Minus
chrX 22417052 chrX 12794252..12794392 141..1 705 100 Minus
chr2L 23010047 chr2L 13411730..13411850 800..920 185 76.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:18:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12902316..12902967 792..141 3260 100 Minus
X 23542271 X 12901352..12901853 1292..791 2510 100 Minus
X 23542271 X 12903329..12903469 141..1 705 100 Minus
2L 23513712 2L 13413068..13413188 800..920 185 76.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12910414..12911065 792..141 3260 100 Minus
X 23527363 X 12909450..12909951 1292..791 2510 100 Minus
X 23527363 X 12911427..12911567 141..1 705 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:39:23 has no hits.

LD26737.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:40:24 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12794252..12794392 1..141 100   Minus
chrX 12792280..12792778 793..1291 99 <- Minus
chrX 12793243..12793893 142..792 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:05:47 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 130..1098 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:21:03 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 130..1098 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:53 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 130..1098 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:52:51 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 130..1098 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:01 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 130..1098 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:17:41 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 15..1303 1..1289 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:21:03 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 49..1339 1..1291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:53 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 48..1338 1..1291 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:52:52 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 15..1303 1..1289 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:01 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 48..1338 1..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:24 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
X 12901353..12901851 793..1291 100 <- Minus
X 12902316..12902966 142..792 100 <- Minus
X 12903329..12903469 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:24 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
X 12901353..12901851 793..1291 100 <- Minus
X 12902316..12902966 142..792 100 <- Minus
X 12903329..12903469 1..141 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:40:24 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
X 12901353..12901851 793..1291 100 <- Minus
X 12902316..12902966 142..792 100 <- Minus
X 12903329..12903469 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:53 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12795386..12795884 793..1291 100 <- Minus
arm_X 12796349..12796999 142..792 100 <- Minus
arm_X 12797362..12797502 1..141 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:31:14 Download gff for LD26737.complete
Subject Subject Range Query Range Percent Splice Strand
X 12909451..12909949 793..1291 100 <- Minus
X 12910414..12911064 142..792 100 <- Minus
X 12911427..12911567 1..141 100   Minus

LD26737.pep Sequence

Translation from 129 to 1097

> LD26737.pep
MSYWRVTSSFLLARARPRLPQTLRPLSTMNECRKNITNITNITANNSILC
AKSISKKHLFLEKRSMSDRSENSKDVAKGQDISNPMELTAEDRLAIEERQ
NKAFAFFAETLQIYGVEELIFCFNGGKDCTVLLDLLMRYLRQENISSGDI
PMLYIKSGDSFPEIDEFVERCVRNYRVQLVQYEGTLKEALTHMSSDMPRI
KAVFVGSRNTDPYCQHLAPMQPTDNDWPPMMRLNPLLEWSYHDVWHYIHL
NSVPYCSLYDRGYTSIGNRANTVPNPHLRRTDAECECGSNSDAVCSCDLG
GYRPAWELQDATMERAGRLPRK*

LD26737.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20884-PA 294 GF20884-PA 24..294 54..322 1001 69.2 Plus
Dana\GF23240-PA 259 GF23240-PA 13..246 58..319 488 38.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19532-PA 306 GG19532-PA 1..306 1..322 1269 77.5 Plus
Dere\GG23851-PA 253 GG23851-PA 35..240 96..318 445 40.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17619-PA 231 GH17619-PA 1..231 86..322 815 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-PA 322 CG4407-PA 1..322 1..322 1724 100 Plus
CG4407-PB 294 CG4407-PB 1..294 29..322 1581 100 Plus
CG16848-PA 254 CG16848-PA 50..241 111..318 471 43.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16275-PA 304 GI16275-PA 54..304 69..322 786 59.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22960-PA 277 GL22960-PA 32..277 72..322 945 69.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18164-PA 277 GA18164-PA 32..277 72..322 946 69.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11526-PA 319 GM11526-PA 1..319 1..322 1615 92.2 Plus
Dsec\GM10510-PA 254 GM10510-PA 49..241 110..318 465 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23899-PA 254 GD23899-PA 49..241 110..318 465 42.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16919-PA 290 GJ16919-PA 48..290 81..322 815 62.1 Plus
Dvir\GJ18102-PA 257 GJ18102-PA 26..244 95..318 493 41.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16392-PA 486 GK16392-PA 71..307 91..322 887 67.1 Plus
Dwil\GK19034-PA 223 GK19034-PA 15..209 110..318 461 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16191-PA 322 GE16191-PA 1..322 1..322 1466 84 Plus
Dyak\GE18655-PA 256 GE18655-PA 49..243 110..318 456 43.1 Plus

LD26737.hyp Sequence

Translation from 129 to 1097

> LD26737.hyp
MSYWRVTSSFLLARARPRLPQTLRPLSTMNECRKNITNITNITANNSILC
AKSISKKHLFLEKRSMSDRSENSKDVAKGQDISNPMELTAEDRLAIEERQ
NKAFAFFAETLQIYGVEELIFCFNGGKDCTVLLDLLMRYLRQENISSGDI
PMLYIKSGDSFPEIDEFVERCVRNYRVQLVQYEGTLKEALTHMSSDMPRI
KAVFVGSRNTDPYCQHLAPMQPTDNDWPPMMRLNPLLEWSYHDVWHYIHL
NSVPYCSLYDRGYTSIGNRANTVPNPHLRRTDAECECGSNSDAVCSCDLG
GYRPAWELQDATMERAGRLPRK*

LD26737.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-PA 322 CG4407-PA 1..322 1..322 1724 100 Plus
CG4407-PB 294 CG4407-PB 1..294 29..322 1581 100 Plus
CG16848-PA 254 CG16848-PA 50..241 111..318 471 43.3 Plus